Wall clock time and date at job start Mon Mar 30 2020 01:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99983 * 2 1 4 4 H 1.09004 * 109.46900 * 30.00373 * 3 2 1 5 5 C 1.50696 * 109.47352 * 270.00385 * 3 2 1 6 6 O 1.21283 * 119.99743 * 345.34819 * 5 3 2 7 7 N 1.34774 * 120.00405 * 165.34896 * 5 3 2 8 8 C 1.37137 * 120.00349 * 211.76589 * 7 5 3 9 9 H 1.07993 * 120.00367 * 202.34747 * 8 7 5 10 10 C 1.38895 * 119.99809 * 22.34685 * 8 7 5 11 11 N 1.31426 * 119.99699 * 12.86054 * 10 8 7 12 12 Si 1.86795 * 120.00086 * 192.86350 * 10 8 7 13 13 H 1.48505 * 109.46963 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47610 * 119.99843 * 12 10 8 15 15 H 1.48503 * 109.47179 * 239.99943 * 12 10 8 16 16 C 1.39793 * 119.99916 * 31.76903 * 7 5 3 17 17 C 1.38951 * 120.07683 * 146.42641 * 16 7 5 18 18 C 1.38088 * 119.92149 * 179.97438 * 17 16 7 19 19 C 1.38307 * 120.07383 * 0.02562 * 18 17 16 20 20 C 1.38302 * 120.16182 * 359.97438 * 19 18 17 21 21 C 1.38088 * 120.07471 * 359.97438 * 20 19 18 22 22 C 1.52999 * 109.47253 * 149.99962 * 3 2 1 23 23 C 1.53004 * 117.50133 * 1.52487 * 22 3 2 24 24 C 1.52999 * 117.50119 * 292.86275 * 22 3 2 25 25 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46931 * 299.99688 * 1 2 3 27 27 H 1.08998 * 109.47263 * 60.00289 * 1 2 3 28 28 H 0.97001 * 119.99594 * 184.97888 * 11 10 8 29 29 H 1.08001 * 120.04521 * 359.71040 * 17 16 7 30 30 H 1.07997 * 119.96151 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.91932 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.96476 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.03705 * 179.97438 * 21 20 19 34 34 H 1.09004 * 115.55273 * 147.19300 * 22 3 2 35 35 H 1.09009 * 117.49474 * 359.97438 * 23 22 3 36 36 H 1.08996 * 117.50213 * 145.01664 * 23 22 3 37 37 H 1.08998 * 117.50226 * 214.98173 * 24 22 3 38 38 H 1.09007 * 117.49744 * 0.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2144 1.7645 -1.4208 6 8 2.1496 0.9658 -2.3312 7 7 2.4691 3.0623 -1.6797 8 6 2.0333 3.6262 -2.8514 9 1 2.5146 4.5134 -3.2355 10 6 0.9729 3.0562 -3.5441 11 7 0.2268 2.1413 -2.9665 12 14 0.6073 3.5899 -5.2964 13 1 1.5862 4.6263 -5.7126 14 1 0.7110 2.4182 -6.2027 15 1 -0.7661 4.1503 -5.3669 16 6 3.1776 3.8338 -0.7539 17 6 4.0271 4.8421 -1.1927 18 6 4.7250 5.6025 -0.2754 19 6 4.5796 5.3612 1.0786 20 6 3.7350 4.3585 1.5190 21 6 3.0332 3.5948 0.6073 22 6 3.3589 1.2633 0.7212 23 6 3.8357 -0.0913 1.2492 24 6 3.3473 0.9821 2.2251 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.4676 1.6914 -3.4728 29 1 4.1447 5.0280 -2.2501 30 1 5.3858 6.3861 -0.6158 31 1 5.1270 5.9572 1.7939 32 1 3.6235 4.1730 2.5771 33 1 2.3741 2.8117 0.9518 34 1 4.1157 1.9510 0.3437 35 1 3.1883 -0.9524 1.0830 36 1 4.9061 -0.2947 1.2192 37 1 4.0966 1.4844 2.8369 38 1 2.3788 0.8267 2.7007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415068884.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:17 Heat of formation + Delta-G solvation = 20.073277 kcal Electronic energy + Delta-G solvation = -22560.171863 eV Core-core repulsion = 19370.735443 eV Total energy + Delta-G solvation = -3189.436421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.99059 -39.40151 -38.84731 -36.99894 -35.99446 -34.08607 -32.07488 -30.18772 -29.71724 -27.51196 -26.51218 -23.51991 -23.22646 -23.06004 -22.12731 -21.04618 -19.08958 -18.71426 -17.89835 -17.20545 -16.64052 -16.53500 -16.09178 -15.82621 -15.68961 -15.18516 -14.82077 -14.69891 -14.32768 -13.96343 -13.73930 -13.51245 -13.44786 -12.95287 -12.69018 -12.48598 -12.27693 -12.21412 -12.15593 -11.93456 -11.72562 -11.41098 -11.36330 -11.16411 -10.95057 -10.41194 -9.66985 -9.49710 -8.76855 -8.25552 -6.00731 0.65426 0.69377 1.32760 1.38209 1.48022 2.09534 2.29372 2.56337 2.96802 3.05928 3.06500 3.30777 3.70136 3.88543 3.96320 4.16946 4.25925 4.34404 4.37017 4.43588 4.53750 4.56115 4.70815 4.78838 4.84933 4.90098 4.91993 5.03587 5.13359 5.26934 5.31947 5.34978 5.41343 5.72547 5.75647 5.83645 5.92484 6.13633 6.31652 6.80529 7.08345 7.52293 8.05088 8.71788 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.009768 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.495889 B = 2865.788498 C = 4393.139446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.376 6.376 3 C 0.119 3.881 4 H 0.082 0.918 5 C 0.479 3.521 6 O -0.540 6.540 7 N -0.443 5.443 8 C -0.351 4.351 9 H 0.095 0.905 10 C -0.012 4.012 11 N -0.865 5.865 12 Si 0.986 3.014 13 H -0.257 1.257 14 H -0.291 1.291 15 H -0.273 1.273 16 C 0.136 3.864 17 C -0.178 4.178 18 C -0.098 4.098 19 C -0.158 4.158 20 C -0.091 4.091 21 C -0.195 4.195 22 C -0.174 4.174 23 C -0.170 4.170 24 C -0.136 4.136 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.263 0.737 29 H 0.103 0.897 30 H 0.141 0.859 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.244 2.974 12.852 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.057 3.943 4 H 0.099 0.901 5 C 0.270 3.730 6 O -0.415 6.415 7 N -0.157 5.157 8 C -0.477 4.477 9 H 0.112 0.888 10 C -0.216 4.216 11 N -0.502 5.502 12 Si 0.811 3.189 13 H -0.181 1.181 14 H -0.218 1.218 15 H -0.198 1.198 16 C 0.039 3.961 17 C -0.199 4.199 18 C -0.116 4.116 19 C -0.177 4.177 20 C -0.109 4.109 21 C -0.215 4.215 22 C -0.192 4.192 23 C -0.207 4.207 24 C -0.172 4.172 25 H 0.119 0.881 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.159 0.841 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.166 0.834 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.144 0.856 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.051 2.204 12.280 13.460 hybrid contribution -0.849 0.195 -1.821 2.019 sum 4.202 2.399 10.459 11.524 Atomic orbital electron populations 1.22904 0.80209 1.03375 1.00297 1.87806 1.20829 1.26242 1.94442 1.21896 0.95348 0.85086 0.91932 0.90080 1.20912 0.79332 0.81371 0.91414 1.90413 1.48438 1.53627 1.49053 1.41454 1.49354 1.07511 1.17332 1.19684 1.13263 1.12764 1.02025 0.88762 1.25973 0.94518 0.97296 1.03781 1.69910 1.18506 1.25084 1.36733 0.84980 0.78374 0.77735 0.77855 1.18075 1.21765 1.19839 1.18577 0.93985 0.93578 0.89972 1.20958 0.99462 0.99532 0.99962 1.21162 0.98433 0.98587 0.93419 1.21334 1.01307 0.99716 0.95346 1.21200 0.95458 0.94413 0.99830 1.22211 1.04577 1.03655 0.91091 1.22403 0.95981 1.02268 0.98582 1.23028 1.01559 0.92756 1.03389 1.23149 1.03944 1.01017 0.89119 0.88059 0.92492 0.95344 0.92730 0.87930 0.84075 0.83129 0.82846 0.83357 0.87083 0.89085 0.87823 0.85598 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 10.81 113.37 1.23 2.30 16 2 O -0.38 -16.09 8.29 -130.36 -1.08 -17.17 16 3 C 0.12 5.08 1.97 29.85 0.06 5.14 16 4 H 0.08 3.38 5.94 -2.38 -0.01 3.37 16 5 C 0.48 26.10 5.14 87.66 0.45 26.55 16 6 O -0.54 -34.38 14.38 15.58 0.22 -34.15 16 7 N -0.44 -23.67 2.85 -458.91 -1.31 -24.97 16 8 C -0.35 -19.99 9.12 84.02 0.77 -19.22 16 9 H 0.09 5.13 6.49 -2.91 -0.02 5.11 16 10 C -0.01 -0.66 4.77 84.91 0.41 -0.26 16 11 N -0.86 -51.72 10.12 21.65 0.22 -51.50 16 12 Si 0.99 45.83 29.57 68.60 2.03 47.85 16 13 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 14 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 16 C 0.14 5.95 5.41 38.22 0.21 6.16 16 17 C -0.18 -7.00 9.29 22.41 0.21 -6.79 16 18 C -0.10 -2.88 10.04 22.25 0.22 -2.66 16 19 C -0.16 -3.94 10.04 22.30 0.22 -3.71 16 20 C -0.09 -2.40 10.04 22.25 0.22 -2.17 16 21 C -0.20 -6.89 5.65 22.41 0.13 -6.76 16 22 C -0.17 -5.99 3.16 -10.79 -0.03 -6.02 16 23 C -0.17 -5.02 9.87 30.62 0.30 -4.72 16 24 C -0.14 -3.24 9.70 30.62 0.30 -2.94 16 25 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 26 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 27 H 0.03 1.30 7.94 -2.39 -0.02 1.28 16 28 H 0.26 15.23 8.32 -92.71 -0.77 14.46 16 29 H 0.10 4.28 6.81 -2.91 -0.02 4.26 16 30 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 33 H 0.15 5.21 2.32 -2.92 -0.01 5.21 16 34 H 0.11 4.13 5.52 -2.38 -0.01 4.12 16 35 H 0.09 2.94 7.02 -2.38 -0.02 2.93 16 36 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -74.46 306.73 5.84 -68.61 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 1.07 Total: 26.43 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 4.68 Total: -15.11 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -1.09 Total: -76.47 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -0.86 Total: -51.32 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -74.46 5.84 -68.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415068884.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.687 kcal (2) G-P(sol) polarization free energy of solvation -74.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds