Wall clock time and date at job start Mon Mar 30 2020 01:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00106 * 2 1 4 4 H 1.48503 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47234 * 300.00082 * 3 2 1 6 6 H 1.48506 * 109.46979 * 59.99782 * 3 2 1 7 7 C 1.37880 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99675 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99860 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46956 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99982 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99894 * 4.98864 * 11 10 9 13 13 N 1.34780 * 120.00224 * 184.99802 * 11 10 9 14 14 C 1.46506 * 119.99490 * 356.25723 * 13 11 10 15 15 C 1.50699 * 109.47154 * 90.00276 * 14 13 11 16 16 C 1.38220 * 119.62024 * 94.99504 * 15 14 13 17 17 C 1.38631 * 119.16543 * 179.97438 * 16 15 14 18 18 C 1.38676 * 118.41841 * 0.02562 * 17 16 15 19 19 C 1.38182 * 119.16093 * 0.26794 * 18 17 16 20 20 N 1.31859 * 119.61505 * 274.97551 * 15 14 13 21 21 C 1.46496 * 120.00227 * 176.25428 * 13 11 10 22 22 C 1.52995 * 117.49739 * 17.09989 * 21 13 11 23 23 C 1.52992 * 60.00069 * 252.50587 * 22 21 13 24 24 H 0.96999 * 120.00194 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47377 * 60.00346 * 9 7 2 26 26 H 1.08993 * 109.47312 * 299.99835 * 9 7 2 27 27 H 0.96995 * 120.00092 * 359.97438 * 10 9 7 28 28 H 1.09001 * 109.47206 * 329.99966 * 14 13 11 29 29 H 1.09001 * 109.46908 * 209.99910 * 14 13 11 30 30 H 1.08001 * 120.41887 * 359.95930 * 16 15 14 31 31 H 1.07992 * 120.79412 * 180.02562 * 17 16 15 32 32 H 1.07999 * 120.42184 * 180.02562 * 18 17 16 33 33 H 1.07999 * 119.61619 * 179.70371 * 19 18 17 34 34 H 1.09004 * 115.54707 * 162.80355 * 21 13 11 35 35 H 1.08997 * 117.50292 * 359.97438 * 22 21 13 36 36 H 1.09003 * 117.49965 * 145.01493 * 22 21 13 37 37 H 1.09003 * 117.50153 * 252.51159 * 23 22 21 38 38 H 1.09000 * 117.51850 * 107.47890 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5623 -5.1068 -0.0914 13 7 2.6253 -5.9063 0.1043 14 6 4.0658 -5.6411 0.1338 15 6 4.5121 -5.4485 1.5602 16 6 5.0268 -6.5199 2.2656 17 6 5.4350 -6.3320 3.5771 18 6 5.3090 -5.0677 4.1327 19 6 4.7794 -4.0458 3.3680 20 7 4.4073 -4.2596 2.1209 21 6 2.1321 -7.2833 0.1866 22 6 0.6871 -7.5430 -0.2436 23 6 1.0640 -7.5895 1.2384 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 3.1566 -3.4354 0.0021 28 1 4.2810 -4.7391 -0.4392 29 1 4.5996 -6.4850 -0.3031 30 1 5.1098 -7.4913 1.8009 31 1 5.8413 -7.1506 4.1523 32 1 5.6172 -4.8849 5.1515 33 1 4.6735 -3.0595 3.7950 34 1 2.8677 -8.0595 -0.0245 35 1 0.1031 -6.6893 -0.5875 36 1 0.4716 -8.4902 -0.7381 37 1 1.0967 -8.5673 1.7190 38 1 0.7286 -6.7665 1.8695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426451178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:52 Heat of formation + Delta-G solvation = 30.793068 kcal Electronic energy + Delta-G solvation = -21339.206298 eV Core-core repulsion = 18182.527474 eV Total energy + Delta-G solvation = -3156.678824 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68725 -40.71549 -37.81400 -36.32410 -35.45910 -33.94705 -33.27033 -32.16419 -29.18184 -27.54097 -25.21428 -24.34228 -23.26584 -23.20612 -22.98547 -20.94345 -19.15021 -18.20596 -17.62866 -17.59728 -16.95788 -16.70332 -16.53279 -16.06887 -15.99924 -15.19632 -14.89024 -14.55891 -14.46747 -14.11072 -13.94611 -13.83051 -13.68168 -13.16978 -12.87034 -12.78470 -12.70838 -12.36021 -12.18313 -12.00202 -11.43462 -11.20600 -10.79791 -10.74065 -10.49473 -10.30935 -9.95546 -9.83661 -9.22287 -8.27674 -6.42951 0.17593 0.46633 1.40817 1.42960 1.56531 1.77561 2.19058 2.38203 2.89616 3.06408 3.10302 3.25142 3.41628 3.81370 4.02223 4.07376 4.11978 4.19570 4.22764 4.31484 4.42399 4.56923 4.69046 4.77875 4.84558 4.91285 5.05813 5.12591 5.25595 5.27617 5.32166 5.43791 5.50821 5.79093 5.83434 5.87035 5.98191 6.09567 6.68618 7.17583 7.23650 7.26405 7.77941 8.85209 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.006188 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.490139 B = 4523.894689 C = 5976.062446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.292 3.708 10 N -0.715 5.715 11 C 0.690 3.310 12 O -0.631 6.631 13 N -0.595 5.595 14 C 0.160 3.840 15 C 0.081 3.919 16 C -0.149 4.149 17 C -0.078 4.078 18 C -0.168 4.168 19 C 0.073 3.927 20 N -0.507 5.507 21 C 0.099 3.901 22 C -0.211 4.211 23 C -0.192 4.192 24 H 0.268 0.732 25 H -0.015 1.015 26 H -0.024 1.024 27 H 0.402 0.598 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.169 0.831 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.181 0.819 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.018 -17.423 5.631 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.093 0.907 9 C 0.168 3.832 10 N -0.370 5.370 11 C 0.392 3.608 12 O -0.515 6.515 13 N -0.330 5.330 14 C 0.037 3.963 15 C -0.058 4.058 16 C -0.169 4.169 17 C -0.104 4.104 18 C -0.188 4.188 19 C -0.084 4.084 20 N -0.217 5.217 21 C -0.005 4.005 22 C -0.248 4.248 23 C -0.231 4.231 24 H 0.077 0.923 25 H 0.003 0.997 26 H -0.006 1.006 27 H 0.240 0.760 28 H 0.096 0.904 29 H 0.165 0.835 30 H 0.186 0.814 31 H 0.187 0.813 32 H 0.177 0.823 33 H 0.169 0.831 34 H 0.198 0.802 35 H 0.119 0.881 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.693 -16.731 5.062 22.835 hybrid contribution 0.206 0.844 0.715 1.125 sum 14.899 -15.888 5.777 22.534 Atomic orbital electron populations 1.70151 1.08205 1.28393 1.50322 1.26040 0.95779 1.03729 0.93928 0.85113 0.78930 0.77316 0.77849 1.18004 1.20094 1.20266 1.21533 0.93889 0.90548 1.52380 0.90684 1.18299 0.87966 0.83629 0.93271 1.45513 1.10938 1.03854 1.76645 1.16434 0.84824 0.81652 0.77880 1.90640 1.16739 1.83645 1.60443 1.46523 1.05299 1.04460 1.76671 1.20632 0.79644 1.04795 0.91220 1.21917 0.96340 0.89617 0.97944 1.22258 0.98748 1.00266 0.95591 1.22017 0.95822 0.97676 0.94899 1.22455 1.00118 0.93994 1.02243 1.22990 0.95023 1.00657 0.89695 1.67434 1.15313 1.25273 1.13700 1.21937 0.92524 0.82456 1.03572 1.23948 0.98843 1.04343 0.97693 1.23152 1.05247 1.02181 0.92493 0.92281 0.99748 1.00629 0.76043 0.90367 0.83497 0.81398 0.81308 0.82330 0.83149 0.80164 0.88054 0.86663 0.85522 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.67 13.29 21.45 0.28 -58.39 16 2 C 0.00 0.25 5.46 84.66 0.46 0.72 16 3 Si 0.98 44.62 29.54 68.60 2.03 46.65 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.55 -32.04 9.28 25.60 0.24 -31.80 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.11 16 9 C 0.29 17.53 5.43 85.63 0.47 17.99 16 10 N -0.72 -34.96 5.42 -482.31 -2.61 -37.57 16 11 C 0.69 31.60 8.03 179.05 1.44 33.04 16 12 O -0.63 -33.81 12.23 -3.98 -0.05 -33.86 16 13 N -0.60 -19.14 2.82 -820.05 -2.32 -21.45 16 14 C 0.16 3.86 5.50 85.63 0.47 4.33 16 15 C 0.08 2.06 6.36 42.55 0.27 2.33 16 16 C -0.15 -2.56 9.72 22.36 0.22 -2.34 16 17 C -0.08 -1.20 10.18 22.47 0.23 -0.97 16 18 C -0.17 -3.18 10.11 22.36 0.23 -2.95 16 19 C 0.07 1.98 11.18 84.67 0.95 2.93 16 20 N -0.51 -16.32 9.66 -183.88 -1.78 -18.10 16 21 C 0.10 2.52 6.62 44.99 0.30 2.82 16 22 C -0.21 -6.43 9.64 30.59 0.29 -6.14 16 23 C -0.19 -5.50 9.90 30.59 0.30 -5.20 16 24 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 25 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 26 H -0.02 -1.64 8.14 -2.39 -0.02 -1.66 16 27 H 0.40 17.79 5.47 -92.71 -0.51 17.28 16 28 H 0.08 2.12 6.45 -2.39 -0.02 2.11 16 29 H 0.15 1.94 7.93 -2.39 -0.02 1.92 16 30 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 32 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 34 H 0.18 2.50 8.09 -2.38 -0.02 2.48 16 35 H 0.10 4.29 4.95 -26.27 -0.13 4.16 16 36 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.04 1.72 7.82 -2.39 -0.02 1.70 16 Total: -1.00 -83.08 323.11 1.86 -81.22 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.45 Total: 26.76 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 5.86 Total: 14.74 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -6.42 Total: -135.51 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.05 Total: -33.86 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -83.08 1.86 -81.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426451178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.012 kcal (2) G-P(sol) polarization free energy of solvation -83.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds