Wall clock time and date at job start Mon Mar 30 2020 01:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99945 * 2 1 4 4 O 1.20822 * 120.00247 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99644 * 180.02562 * 3 2 1 6 6 C 1.50694 * 110.29099 * 59.30335 * 5 3 2 7 7 C 1.38237 * 120.00079 * 4.19998 * 6 5 3 8 8 C 1.38237 * 120.00054 * 179.97438 * 7 6 5 9 9 C 1.38233 * 119.99827 * 0.09437 * 8 7 6 10 10 C 1.38230 * 120.00047 * 359.97438 * 9 8 7 11 11 C 1.38234 * 120.00324 * 359.96065 * 10 9 8 12 12 C 1.54613 * 110.41109 * 181.49524 * 5 3 2 13 13 C 1.54939 * 102.83777 * 97.08539 * 12 5 3 14 14 N 1.48119 * 103.25660 * 37.37981 * 13 12 5 15 15 C 1.36934 * 127.03646 * 140.66930 * 14 13 12 16 16 H 1.07998 * 120.00175 * 347.73146 * 15 14 13 17 17 C 1.38816 * 119.99790 * 167.72686 * 15 14 13 18 18 N 1.31622 * 120.00303 * 351.41335 * 17 15 14 19 19 Si 1.86802 * 119.99749 * 171.41110 * 17 15 14 20 20 H 1.48504 * 109.47079 * 60.00427 * 19 17 15 21 21 H 1.48503 * 109.47044 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47279 * 299.99957 * 19 17 15 23 23 C 1.47482 * 105.92844 * 320.70690 * 14 13 12 24 24 H 1.09003 * 109.46632 * 299.99710 * 1 2 3 25 25 H 1.09004 * 109.47076 * 59.99190 * 1 2 3 26 26 H 1.08993 * 109.47211 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99862 * 0.06334 * 7 6 5 28 28 H 1.08001 * 120.00022 * 180.36104 * 8 7 6 29 29 H 1.08006 * 119.99689 * 179.97438 * 9 8 7 30 30 H 1.08001 * 119.99643 * 179.97438 * 10 9 8 31 31 H 1.07997 * 120.00055 * 180.02562 * 11 10 9 32 32 H 1.08998 * 110.74169 * 215.42487 * 12 5 3 33 33 H 1.09001 * 110.74207 * 338.75312 * 12 5 3 34 34 H 1.08996 * 110.66547 * 278.93106 * 13 12 5 35 35 H 1.09010 * 110.80553 * 155.88581 * 13 12 5 36 36 H 0.96995 * 120.00040 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.91293 * 266.08912 * 23 14 13 38 38 H 1.08997 * 110.07889 * 144.89902 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.1255 0.5818 -1.2163 7 6 3.2706 0.0697 -2.1744 8 6 3.7835 -0.5655 -3.2899 9 6 5.1513 -0.6903 -3.4463 10 6 6.0061 -0.1795 -2.4877 11 6 5.4933 0.4569 -1.3728 12 6 4.0292 2.7496 0.0373 13 6 4.3127 2.9828 1.5426 14 7 4.8994 1.6955 1.9812 15 6 5.9389 1.5179 2.8547 16 1 6.5473 2.3605 3.1486 17 6 6.2107 0.2549 3.3625 18 7 5.3743 -0.7371 3.1419 19 14 7.7636 -0.0367 4.3591 20 1 7.7531 0.8378 5.5592 21 1 7.8194 -1.4586 4.7839 22 1 8.9523 0.2788 3.5269 23 6 4.1357 0.6441 1.2839 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 2.2020 0.1672 -2.0520 28 1 3.1158 -0.9605 -4.0412 29 1 5.5520 -1.1870 -4.3177 30 1 7.0747 -0.2774 -2.6098 31 1 6.1612 0.8564 -0.6241 32 1 4.9362 2.8848 -0.5518 33 1 3.2375 3.4117 -0.3134 34 1 3.3873 3.1871 2.0812 35 1 5.0243 3.7969 1.6810 36 1 5.5645 -1.6197 3.4964 37 1 3.3211 0.2943 1.9182 38 1 4.7915 -0.1885 1.0294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428784635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:06 Heat of formation + Delta-G solvation = -27.817577 kcal Electronic energy + Delta-G solvation = -22096.499134 eV Core-core repulsion = 18904.986011 eV Total energy + Delta-G solvation = -3191.513124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.73933 -38.80544 -37.13258 -35.93012 -33.05879 -31.33091 -30.57419 -28.70160 -28.18229 -26.98664 -24.90847 -23.00685 -21.95128 -21.45945 -20.45801 -19.11436 -17.59771 -16.94735 -16.56077 -16.24265 -15.54823 -14.99364 -14.41251 -14.26994 -13.98516 -13.69613 -13.17201 -13.01602 -12.80552 -12.76750 -12.38470 -12.19366 -11.87979 -11.50676 -11.31200 -10.96560 -10.84123 -10.81851 -10.63054 -10.49368 -10.43081 -10.18194 -10.06747 -9.75968 -9.73015 -8.71155 -8.57059 -8.31544 -6.90081 -5.80285 -3.13914 1.66540 1.74050 2.57932 3.05016 3.38565 3.43293 3.44486 4.09594 4.45656 4.90851 4.99714 5.23601 5.25916 5.28754 5.34417 5.39048 5.42202 5.49202 5.58398 5.67407 5.72003 5.82784 5.93038 6.07819 6.20273 6.27755 6.39407 6.48914 6.61019 6.70415 6.74269 6.83480 6.88503 6.99641 7.23106 7.33832 7.44114 7.69015 8.10908 8.15096 9.09834 9.72101 10.44507 11.34083 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.007368 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.434007 B = 3799.376490 C = 4624.391869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.348 6.348 3 C 0.488 3.512 4 O -0.513 6.513 5 C -0.044 4.044 6 C -0.052 4.052 7 C -0.119 4.119 8 C -0.123 4.123 9 C -0.129 4.129 10 C -0.120 4.120 11 C -0.093 4.093 12 C -0.115 4.115 13 C 0.123 3.877 14 N -0.597 5.597 15 C -0.231 4.231 16 H 0.080 0.920 17 C -0.004 4.004 18 N -0.916 5.916 19 Si 0.912 3.088 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.191 3.809 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.026 0.974 35 H 0.056 0.944 36 H 0.256 0.744 37 H 0.033 0.967 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 0.422 -11.451 12.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.264 6.264 3 C 0.331 3.669 4 O -0.401 6.401 5 C -0.046 4.046 6 C -0.052 4.052 7 C -0.137 4.137 8 C -0.141 4.141 9 C -0.147 4.147 10 C -0.138 4.138 11 C -0.111 4.111 12 C -0.154 4.154 13 C -0.003 4.003 14 N -0.321 5.321 15 C -0.359 4.359 16 H 0.097 0.903 17 C -0.201 4.201 18 N -0.561 5.561 19 Si 0.742 3.258 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.065 3.935 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.153 0.847 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.872 0.521 -11.281 12.300 hybrid contribution 0.372 -0.309 0.613 0.781 sum -4.500 0.212 -10.668 11.580 Atomic orbital electron populations 1.23221 0.77403 1.03378 1.02143 1.86648 1.22488 1.33438 1.83839 1.23514 0.91696 0.80996 0.70679 1.90581 1.67014 1.36417 1.46053 1.20849 0.85946 0.99280 0.98561 1.19442 0.93900 0.97902 0.93962 1.21096 0.99173 0.99059 0.94346 1.20970 0.95310 1.00122 0.97693 1.21057 0.93565 1.00821 0.99275 1.21106 0.99606 0.98694 0.94396 1.21118 0.94611 0.97939 0.97436 1.22913 1.01049 0.91663 0.99750 1.21867 0.96513 0.90621 0.91273 1.44783 1.37222 0.99640 1.50505 1.18972 1.03903 0.94539 1.18497 0.90265 1.24883 0.98856 0.96525 0.99857 1.69892 1.35532 1.01343 1.49381 0.86211 0.82745 0.76997 0.79876 1.21042 1.21569 1.21034 1.21233 0.95271 0.91724 0.85309 0.92029 0.92353 0.88326 0.86689 0.86547 0.86585 0.86180 0.84710 0.90396 0.90224 0.95588 0.92576 0.93386 0.94862 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.49 16 2 O -0.35 -6.17 8.93 -39.26 -0.35 -6.52 16 3 C 0.49 9.49 5.10 36.01 0.18 9.67 16 4 O -0.51 -10.41 15.16 -18.75 -0.28 -10.70 16 5 C -0.04 -0.88 0.75 -155.44 -0.12 -0.99 16 6 C -0.05 -0.94 4.71 -104.63 -0.49 -1.43 16 7 C -0.12 -1.93 8.85 -39.58 -0.35 -2.28 16 8 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 9 C -0.13 -1.75 10.05 -39.59 -0.40 -2.15 16 10 C -0.12 -1.80 10.05 -39.59 -0.40 -2.19 16 11 C -0.09 -1.65 8.05 -39.58 -0.32 -1.96 16 12 C -0.12 -2.17 5.92 -24.86 -0.15 -2.32 16 13 C 0.12 2.63 7.28 -2.13 -0.02 2.61 16 14 N -0.60 -15.03 3.36 -169.31 -0.57 -15.60 16 15 C -0.23 -6.27 10.32 -15.06 -0.16 -6.42 16 16 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 17 C 0.00 -0.11 5.42 -17.43 -0.09 -0.20 16 18 N -0.92 -26.44 10.88 55.49 0.60 -25.83 16 19 Si 0.91 21.60 29.56 -169.99 -5.03 16.57 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.19 4.61 4.44 -2.98 -0.01 4.59 16 24 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 25 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 26 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.12 1.82 5.73 -52.48 -0.30 1.52 16 28 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.14 2.59 7.90 -52.49 -0.41 2.18 16 32 H 0.08 1.38 7.28 -51.93 -0.38 1.00 16 33 H 0.08 1.44 6.83 -51.93 -0.35 1.09 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.03 0.90 7.64 -51.93 -0.40 0.50 16 38 H 0.09 2.28 6.04 -51.93 -0.31 1.96 16 LS Contribution 313.18 15.07 4.72 4.72 Total: -1.00 -30.80 313.18 -7.64 -38.43 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.09 Total: 2.63 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.65 Total: -3.70 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.04 Total: -41.43 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.63 Total: -17.22 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.80 -7.64 -38.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428784635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.617 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds