Wall clock time and date at job start Mon Mar 30 2020 01:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99945 * 2 1 4 4 O 1.20822 * 120.00247 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99644 * 180.02562 * 3 2 1 6 6 C 1.50694 * 110.29099 * 59.30335 * 5 3 2 7 7 C 1.38237 * 120.00079 * 4.19998 * 6 5 3 8 8 C 1.38237 * 120.00054 * 179.97438 * 7 6 5 9 9 C 1.38233 * 119.99827 * 0.09437 * 8 7 6 10 10 C 1.38230 * 120.00047 * 359.97438 * 9 8 7 11 11 C 1.38234 * 120.00324 * 359.96065 * 10 9 8 12 12 C 1.54613 * 110.41109 * 181.49524 * 5 3 2 13 13 C 1.54939 * 102.83777 * 97.08539 * 12 5 3 14 14 N 1.48119 * 103.25660 * 37.37981 * 13 12 5 15 15 C 1.36934 * 127.03646 * 140.66930 * 14 13 12 16 16 H 1.07998 * 120.00175 * 347.73146 * 15 14 13 17 17 C 1.38816 * 119.99790 * 167.72686 * 15 14 13 18 18 N 1.31622 * 120.00303 * 351.41335 * 17 15 14 19 19 Si 1.86802 * 119.99749 * 171.41110 * 17 15 14 20 20 H 1.48504 * 109.47079 * 60.00427 * 19 17 15 21 21 H 1.48503 * 109.47044 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47279 * 299.99957 * 19 17 15 23 23 C 1.47482 * 105.92844 * 320.70690 * 14 13 12 24 24 H 1.09003 * 109.46632 * 299.99710 * 1 2 3 25 25 H 1.09004 * 109.47076 * 59.99190 * 1 2 3 26 26 H 1.08993 * 109.47211 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99862 * 0.06334 * 7 6 5 28 28 H 1.08001 * 120.00022 * 180.36104 * 8 7 6 29 29 H 1.08006 * 119.99689 * 179.97438 * 9 8 7 30 30 H 1.08001 * 119.99643 * 179.97438 * 10 9 8 31 31 H 1.07997 * 120.00055 * 180.02562 * 11 10 9 32 32 H 1.08998 * 110.74169 * 215.42487 * 12 5 3 33 33 H 1.09001 * 110.74207 * 338.75312 * 12 5 3 34 34 H 1.08996 * 110.66547 * 278.93106 * 13 12 5 35 35 H 1.09010 * 110.80553 * 155.88581 * 13 12 5 36 36 H 0.96995 * 120.00040 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.91293 * 266.08912 * 23 14 13 38 38 H 1.08997 * 110.07889 * 144.89902 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.1255 0.5818 -1.2163 7 6 3.2706 0.0697 -2.1744 8 6 3.7835 -0.5655 -3.2899 9 6 5.1513 -0.6903 -3.4463 10 6 6.0061 -0.1795 -2.4877 11 6 5.4933 0.4569 -1.3728 12 6 4.0292 2.7496 0.0373 13 6 4.3127 2.9828 1.5426 14 7 4.8994 1.6955 1.9812 15 6 5.9389 1.5179 2.8547 16 1 6.5473 2.3605 3.1486 17 6 6.2107 0.2549 3.3625 18 7 5.3743 -0.7371 3.1419 19 14 7.7636 -0.0367 4.3591 20 1 7.7531 0.8378 5.5592 21 1 7.8194 -1.4586 4.7839 22 1 8.9523 0.2788 3.5269 23 6 4.1357 0.6441 1.2839 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 2.2020 0.1672 -2.0520 28 1 3.1158 -0.9605 -4.0412 29 1 5.5520 -1.1870 -4.3177 30 1 7.0747 -0.2774 -2.6098 31 1 6.1612 0.8564 -0.6241 32 1 4.9362 2.8848 -0.5518 33 1 3.2375 3.4117 -0.3134 34 1 3.3873 3.1871 2.0812 35 1 5.0243 3.7969 1.6810 36 1 5.5645 -1.6197 3.4964 37 1 3.3211 0.2943 1.9182 38 1 4.7915 -0.1885 1.0294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428784635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:06 Heat of formation + Delta-G solvation = -44.634696 kcal Electronic energy + Delta-G solvation = -22097.228379 eV Core-core repulsion = 18904.986011 eV Total energy + Delta-G solvation = -3192.242369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.22241 -40.13267 -38.68684 -37.44954 -34.88028 -33.02191 -31.78289 -30.39194 -29.63399 -28.38514 -26.79615 -24.44695 -23.30629 -22.79741 -22.29745 -20.59925 -19.07822 -18.82139 -17.99841 -17.73612 -16.87877 -16.61355 -15.98306 -15.75502 -15.44351 -15.24435 -14.66171 -14.50675 -14.22309 -14.18696 -13.82288 -13.77035 -13.29307 -13.11874 -12.89859 -12.70855 -12.59419 -12.23836 -12.15133 -12.06972 -11.94336 -11.81326 -11.75009 -11.59296 -11.34309 -10.74789 -9.77651 -9.60770 -8.94123 -7.90166 -5.26760 0.44908 0.53916 1.04629 1.48057 1.50975 1.57478 1.69673 2.49051 2.87196 3.30797 3.40056 3.61049 3.76934 3.92397 3.98383 4.11914 4.19906 4.26903 4.30238 4.34172 4.45329 4.53945 4.64721 4.68329 4.77136 4.90369 4.93106 5.00707 5.19217 5.20507 5.26067 5.29501 5.41499 5.57957 5.62318 5.65347 5.73405 6.11984 6.14523 6.63610 7.00325 7.66890 8.40596 9.23422 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.007368 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.434007 B = 3799.376490 C = 4624.391869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.359 6.359 3 C 0.489 3.511 4 O -0.526 6.526 5 C -0.039 4.039 6 C -0.075 4.075 7 C -0.128 4.128 8 C -0.117 4.117 9 C -0.119 4.119 10 C -0.122 4.122 11 C -0.114 4.114 12 C -0.102 4.102 13 C 0.120 3.880 14 N -0.615 5.615 15 C -0.244 4.244 16 H 0.087 0.913 17 C -0.058 4.058 18 N -0.947 5.947 19 Si 0.979 3.021 20 H -0.277 1.277 21 H -0.295 1.295 22 H -0.274 1.274 23 C 0.209 3.791 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.132 0.868 27 H 0.117 0.883 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.141 0.859 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.016 0.984 35 H 0.072 0.928 36 H 0.250 0.750 37 H -0.008 1.008 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 0.128 -13.633 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.275 6.275 3 C 0.333 3.667 4 O -0.415 6.415 5 C -0.042 4.042 6 C -0.075 4.075 7 C -0.146 4.146 8 C -0.134 4.134 9 C -0.136 4.136 10 C -0.140 4.140 11 C -0.132 4.132 12 C -0.140 4.140 13 C -0.005 4.005 14 N -0.341 5.341 15 C -0.372 4.372 16 H 0.105 0.895 17 C -0.252 4.252 18 N -0.595 5.595 19 Si 0.807 3.193 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.199 1.199 23 C 0.083 3.917 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.150 0.850 27 H 0.135 0.865 28 H 0.170 0.830 29 H 0.173 0.827 30 H 0.159 0.841 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.034 0.966 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.010 0.990 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.621 0.252 -13.477 14.249 hybrid contribution 0.215 -0.245 1.249 1.291 sum -4.406 0.007 -12.228 12.998 Atomic orbital electron populations 1.23616 0.74733 1.05847 1.02710 1.86620 1.25156 1.32456 1.83304 1.23349 0.91499 0.81366 0.70439 1.90558 1.67232 1.36832 1.46901 1.20661 0.86655 0.99528 0.97343 1.19372 0.94452 0.99631 0.94046 1.21210 0.99071 0.99409 0.94873 1.21393 0.96257 0.98552 0.97226 1.21504 0.93198 0.99285 0.99630 1.21390 1.01139 0.97817 0.93636 1.21013 0.94163 0.99712 0.98303 1.22803 1.01877 0.91455 0.97890 1.21997 0.96178 0.89623 0.92709 1.45043 1.37155 1.01321 1.50537 1.19387 1.04410 0.94929 1.18486 0.89493 1.25714 1.01841 0.96317 1.01362 1.70106 1.37297 1.01396 1.50675 0.85154 0.79281 0.76355 0.78539 1.20275 1.22155 1.19931 1.20796 0.93130 0.91229 0.86549 0.92538 0.90729 0.84991 0.86504 0.83022 0.82701 0.84120 0.87424 0.89278 0.89082 0.96623 0.90960 0.94088 0.99024 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -12.78 8.93 -51.43 -0.46 -13.24 16 3 C 0.49 19.29 5.10 71.24 0.36 19.65 16 4 O -0.53 -21.36 15.16 21.98 0.33 -21.02 16 5 C -0.04 -1.62 0.75 -52.79 -0.04 -1.66 16 6 C -0.07 -2.73 4.71 -19.87 -0.09 -2.83 16 7 C -0.13 -3.97 8.85 22.27 0.20 -3.77 16 8 C -0.12 -2.86 10.05 22.27 0.22 -2.64 16 9 C -0.12 -2.76 10.05 22.27 0.22 -2.54 16 10 C -0.12 -3.42 10.05 22.27 0.22 -3.20 16 11 C -0.11 -4.05 8.05 22.27 0.18 -3.87 16 12 C -0.10 -3.88 5.92 31.81 0.19 -3.69 16 13 C 0.12 5.22 7.28 86.73 0.63 5.86 16 14 N -0.62 -32.16 3.36 -689.59 -2.32 -34.48 16 15 C -0.24 -13.55 10.32 84.03 0.87 -12.68 16 16 H 0.09 4.56 7.84 -2.91 -0.02 4.54 16 17 C -0.06 -3.29 5.42 84.86 0.46 -2.83 16 18 N -0.95 -56.95 10.88 21.65 0.24 -56.71 16 19 Si 0.98 45.14 29.56 68.60 2.03 47.17 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 21 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 C 0.21 10.65 4.44 86.53 0.38 11.03 16 24 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 25 H 0.07 1.63 8.13 -2.38 -0.02 1.61 16 26 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.12 3.53 5.73 -2.91 -0.02 3.51 16 28 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 31 H 0.11 4.34 7.90 -2.91 -0.02 4.32 16 32 H 0.09 3.17 7.28 -2.39 -0.02 3.15 16 33 H 0.09 3.26 6.83 -2.39 -0.02 3.24 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 36 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 37 H -0.01 -0.47 7.64 -2.38 -0.02 -0.49 16 38 H 0.06 3.22 6.04 -2.39 -0.01 3.21 16 Total: -1.00 -68.99 313.18 5.88 -63.11 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.05 Total: 16.55 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 5.01 Total: -1.38 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -2.08 Total: -91.19 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.13 Total: -34.27 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -68.99 5.88 -63.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428784635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.477 kcal (2) G-P(sol) polarization free energy of solvation -68.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds