Wall clock time and date at job start Mon Mar 30 2020 01:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00375 * 2 1 4 4 H 1.48500 * 109.46792 * 270.00041 * 3 2 1 5 5 H 1.48503 * 109.47151 * 29.99543 * 3 2 1 6 6 H 1.48498 * 109.47226 * 149.99707 * 3 2 1 7 7 C 1.37875 * 119.99312 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99546 * 181.96394 * 7 2 1 9 9 C 1.50702 * 120.00726 * 1.96761 * 7 2 1 10 10 C 1.52996 * 115.55124 * 84.63642 * 9 7 2 11 11 N 1.46499 * 109.47168 * 57.84501 * 10 9 7 12 12 C 1.34775 * 120.00217 * 185.19699 * 11 10 9 13 13 O 1.21565 * 119.99847 * 5.56647 * 12 11 10 14 14 C 1.47708 * 120.00215 * 185.56448 * 12 11 10 15 15 N 1.31848 * 126.56981 * 354.65295 * 14 12 11 16 16 N 1.28462 * 110.06058 * 180.02562 * 15 14 12 17 17 H 0.96991 * 124.88979 * 179.97438 * 16 15 14 18 18 C 1.35257 * 110.22843 * 359.97438 * 16 15 14 19 19 C 1.35051 * 107.07903 * 0.02562 * 18 16 15 20 20 C 1.50943 * 110.52950 * 179.97438 * 19 18 16 21 21 C 1.54517 * 104.96437 * 343.22757 * 20 19 18 22 22 C 1.51236 * 142.76774 * 180.02562 * 18 16 15 23 23 C 1.52994 * 117.49866 * 230.31146 * 9 7 2 24 24 C 1.53001 * 117.49527 * 298.96874 * 9 7 2 25 25 H 0.97000 * 119.99692 * 5.02377 * 1 2 3 26 26 H 1.09002 * 109.46918 * 297.84605 * 10 9 7 27 27 H 1.08996 * 109.47140 * 177.84876 * 10 9 7 28 28 H 0.97000 * 119.99861 * 5.19676 * 11 10 9 29 29 H 1.08994 * 110.34699 * 102.09994 * 20 19 18 30 30 H 1.09003 * 110.34182 * 224.35569 * 20 19 18 31 31 H 1.08996 * 110.93129 * 143.65570 * 21 20 19 32 32 H 1.09004 * 110.93200 * 267.31346 * 21 20 19 33 33 H 1.08991 * 110.33001 * 315.70657 * 22 18 16 34 34 H 1.09002 * 110.32448 * 77.81906 * 22 18 16 35 35 H 1.09005 * 117.49831 * 214.99563 * 23 9 7 36 36 H 1.09003 * 117.50280 * 0.02562 * 23 9 7 37 37 H 1.09007 * 117.49767 * 359.97438 * 24 9 7 38 38 H 1.08997 * 117.49741 * 144.96910 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0326 9 6 1.2516 -2.4989 -0.0437 10 6 0.8511 -2.9827 -1.4388 11 7 2.0495 -3.1233 -2.2696 12 6 1.9316 -3.4381 -3.5748 13 8 0.8310 -3.5060 -4.0866 14 6 3.1395 -3.7006 -4.3833 15 7 4.3914 -3.5682 -3.9911 16 7 5.1885 -3.8803 -4.9489 17 1 6.1567 -3.8592 -4.8941 18 6 4.4835 -4.2426 -6.0449 19 6 3.1751 -4.1416 -5.7261 20 6 2.3122 -4.5300 -6.9021 21 6 3.2557 -4.4754 -8.1245 22 6 4.6368 -4.7122 -7.4743 23 6 1.6180 -3.5614 0.9944 24 6 0.2943 -2.8015 1.1108 25 1 -0.4850 0.8368 -0.0736 26 1 0.1759 -2.2584 -1.8946 27 1 0.3493 -3.9469 -1.3588 28 1 2.9279 -2.9898 -1.8804 29 1 1.9224 -5.5391 -6.7692 30 1 1.4941 -3.8198 -7.0228 31 1 3.0188 -5.2673 -8.8350 32 1 3.2141 -3.4979 -8.6051 33 1 5.4010 -4.1267 -7.9853 34 1 4.8924 -5.7715 -7.4995 35 1 1.5737 -4.6052 0.6834 36 1 2.4033 -3.3166 1.7096 37 1 0.2094 -2.0571 1.9026 38 1 -0.6210 -3.3450 0.8764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435224989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:05 Heat of formation + Delta-G solvation = 63.842400 kcal Electronic energy + Delta-G solvation = -20868.833395 eV Core-core repulsion = 17713.587698 eV Total energy + Delta-G solvation = -3155.245698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.77629 -38.66260 -36.86699 -36.56600 -33.20438 -31.92569 -31.71027 -28.75895 -27.75790 -26.44915 -25.27517 -23.09481 -21.70945 -21.09132 -19.92988 -19.50757 -19.03259 -17.57485 -16.66186 -16.24219 -15.84175 -14.88108 -14.79972 -14.59592 -14.07746 -13.81313 -13.47406 -13.07091 -12.88338 -12.83618 -12.55030 -11.84403 -11.78908 -11.51633 -11.29675 -11.27282 -10.94318 -10.86331 -10.65073 -10.48899 -10.19822 -9.66341 -9.35596 -9.20147 -8.98900 -8.58843 -8.42064 -8.23944 -7.95424 -6.02522 -4.10809 1.80167 2.19565 2.69242 3.30838 3.37798 3.39507 3.85148 3.93426 4.27296 4.41439 4.49343 4.76067 4.83234 5.08603 5.25468 5.29528 5.37187 5.43526 5.56484 5.71766 5.80096 5.96792 6.08288 6.09792 6.16352 6.38123 6.48761 6.54672 6.58427 6.75949 6.93128 7.04985 7.15933 7.35013 7.45695 7.57240 7.87091 7.91760 8.39452 8.44022 8.90217 8.94651 9.56172 11.05819 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.004609 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.845813 B = 6074.080096 C = 6470.927486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.496 4.496 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.686 5.686 12 C 0.589 3.411 13 O -0.546 6.546 14 C 0.020 3.980 15 N -0.249 5.249 16 N -0.368 5.368 17 H 0.441 0.559 18 C -0.032 4.032 19 C -0.162 4.162 20 C -0.047 4.047 21 C -0.116 4.116 22 C -0.033 4.033 23 C -0.212 4.212 24 C -0.143 4.143 25 H 0.261 0.739 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.407 0.593 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.732 -9.533 -13.498 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.534 4.534 8 H 0.078 0.922 9 C 0.024 3.976 10 C 0.039 3.961 11 N -0.334 5.334 12 C 0.372 3.628 13 O -0.423 6.423 14 C -0.141 4.141 15 N -0.084 5.084 16 N -0.080 5.080 17 H 0.285 0.715 18 C -0.158 4.158 19 C -0.172 4.172 20 C -0.085 4.085 21 C -0.154 4.154 22 C -0.072 4.072 23 C -0.249 4.249 24 C -0.181 4.181 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.242 0.758 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.351 -9.145 -12.802 18.302 hybrid contribution 1.026 0.911 -0.272 1.399 sum 10.377 -8.234 -13.074 18.612 Atomic orbital electron populations 1.69993 1.05807 1.26854 1.48486 1.24964 0.94811 0.98871 0.94334 0.86651 0.79913 0.83689 0.78145 1.20673 1.21227 1.19846 1.20344 0.92309 0.88538 1.52170 0.92211 1.19033 0.99220 0.93524 0.85837 1.21020 0.85591 0.98192 0.91304 1.45812 1.11891 1.67427 1.08269 1.16923 0.86118 0.77963 0.81836 1.90737 1.25951 1.53857 1.71766 1.21648 0.91361 1.07128 0.93933 1.73810 1.00826 1.19184 1.14540 1.42601 1.09435 1.49176 1.06812 0.71503 1.22149 0.92651 1.07013 0.94008 1.20857 0.95030 1.06658 0.94700 1.20386 0.97014 1.02051 0.89085 1.22439 0.92938 1.02725 0.97271 1.20585 0.99192 1.01058 0.86405 1.23046 1.00087 0.95622 1.06138 1.22466 0.91125 1.01317 1.03237 0.92932 0.90781 0.94437 0.75812 0.90349 0.90056 0.89928 0.90551 0.90647 0.89786 0.91671 0.90389 0.89598 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.85 12.73 55.43 0.71 -24.15 16 2 C 0.07 2.02 5.43 -17.82 -0.10 1.93 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.50 -13.21 8.38 -34.44 -0.29 -13.50 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.02 0.60 1.51 -155.66 -0.23 0.36 16 10 C 0.16 3.84 5.57 -4.04 -0.02 3.81 16 11 N -0.69 -14.90 5.37 -61.30 -0.33 -15.23 16 12 C 0.59 12.65 7.82 -12.39 -0.10 12.55 16 13 O -0.55 -13.06 16.91 5.31 0.09 -12.97 16 14 C 0.02 0.37 7.13 -82.80 -0.59 -0.22 16 15 N -0.25 -4.03 11.94 33.40 0.40 -3.63 16 16 N -0.37 -4.42 6.84 33.62 0.23 -4.19 16 17 H 0.44 3.43 8.96 -190.45 -1.71 1.72 16 18 C -0.03 -0.38 8.12 -81.95 -0.67 -1.04 16 19 C -0.16 -2.48 6.83 -104.44 -0.71 -3.19 16 20 C -0.05 -0.57 6.78 -26.97 -0.18 -0.76 16 21 C -0.12 -0.93 7.13 -25.16 -0.18 -1.11 16 22 C -0.03 -0.26 6.78 -26.85 -0.18 -0.44 16 23 C -0.21 -4.56 9.94 -26.70 -0.27 -4.82 16 24 C -0.14 -3.36 9.26 -26.70 -0.25 -3.60 16 25 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 26 H 0.07 1.98 8.09 -51.93 -0.42 1.56 16 27 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 28 H 0.41 8.51 7.98 -40.82 -0.33 8.18 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 37 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 38 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -32.31 326.00 -9.43 -41.73 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.65 Total: 7.31 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.76 Total: -10.03 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 1.00 Total: -47.20 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.31 -9.43 -41.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435224989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.576 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds