Wall clock time and date at job start Mon Mar 30 2020 01:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00375 * 2 1 4 4 H 1.48500 * 109.46792 * 270.00041 * 3 2 1 5 5 H 1.48503 * 109.47151 * 29.99543 * 3 2 1 6 6 H 1.48498 * 109.47226 * 149.99707 * 3 2 1 7 7 C 1.37875 * 119.99312 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99546 * 181.96394 * 7 2 1 9 9 C 1.50702 * 120.00726 * 1.96761 * 7 2 1 10 10 C 1.52996 * 115.55124 * 84.63642 * 9 7 2 11 11 N 1.46499 * 109.47168 * 57.84501 * 10 9 7 12 12 C 1.34775 * 120.00217 * 185.19699 * 11 10 9 13 13 O 1.21565 * 119.99847 * 5.56647 * 12 11 10 14 14 C 1.47708 * 120.00215 * 185.56448 * 12 11 10 15 15 N 1.31848 * 126.56981 * 354.65295 * 14 12 11 16 16 N 1.28462 * 110.06058 * 180.02562 * 15 14 12 17 17 H 0.96991 * 124.88979 * 179.97438 * 16 15 14 18 18 C 1.35257 * 110.22843 * 359.97438 * 16 15 14 19 19 C 1.35051 * 107.07903 * 0.02562 * 18 16 15 20 20 C 1.50943 * 110.52950 * 179.97438 * 19 18 16 21 21 C 1.54517 * 104.96437 * 343.22757 * 20 19 18 22 22 C 1.51236 * 142.76774 * 180.02562 * 18 16 15 23 23 C 1.52994 * 117.49866 * 230.31146 * 9 7 2 24 24 C 1.53001 * 117.49527 * 298.96874 * 9 7 2 25 25 H 0.97000 * 119.99692 * 5.02377 * 1 2 3 26 26 H 1.09002 * 109.46918 * 297.84605 * 10 9 7 27 27 H 1.08996 * 109.47140 * 177.84876 * 10 9 7 28 28 H 0.97000 * 119.99861 * 5.19676 * 11 10 9 29 29 H 1.08994 * 110.34699 * 102.09994 * 20 19 18 30 30 H 1.09003 * 110.34182 * 224.35569 * 20 19 18 31 31 H 1.08996 * 110.93129 * 143.65570 * 21 20 19 32 32 H 1.09004 * 110.93200 * 267.31346 * 21 20 19 33 33 H 1.08991 * 110.33001 * 315.70657 * 22 18 16 34 34 H 1.09002 * 110.32448 * 77.81906 * 22 18 16 35 35 H 1.09005 * 117.49831 * 214.99563 * 23 9 7 36 36 H 1.09003 * 117.50280 * 0.02562 * 23 9 7 37 37 H 1.09007 * 117.49767 * 359.97438 * 24 9 7 38 38 H 1.08997 * 117.49741 * 144.96910 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0326 9 6 1.2516 -2.4989 -0.0437 10 6 0.8511 -2.9827 -1.4388 11 7 2.0495 -3.1233 -2.2696 12 6 1.9316 -3.4381 -3.5748 13 8 0.8310 -3.5060 -4.0866 14 6 3.1395 -3.7006 -4.3833 15 7 4.3914 -3.5682 -3.9911 16 7 5.1885 -3.8803 -4.9489 17 1 6.1567 -3.8592 -4.8941 18 6 4.4835 -4.2426 -6.0449 19 6 3.1751 -4.1416 -5.7261 20 6 2.3122 -4.5300 -6.9021 21 6 3.2557 -4.4754 -8.1245 22 6 4.6368 -4.7122 -7.4743 23 6 1.6180 -3.5614 0.9944 24 6 0.2943 -2.8015 1.1108 25 1 -0.4850 0.8368 -0.0736 26 1 0.1759 -2.2584 -1.8946 27 1 0.3493 -3.9469 -1.3588 28 1 2.9279 -2.9898 -1.8804 29 1 1.9224 -5.5391 -6.7692 30 1 1.4941 -3.8198 -7.0228 31 1 3.0188 -5.2673 -8.8350 32 1 3.2141 -3.4979 -8.6051 33 1 5.4010 -4.1267 -7.9853 34 1 4.8924 -5.7715 -7.4995 35 1 1.5737 -4.6052 0.6834 36 1 2.4033 -3.3166 1.7096 37 1 0.2094 -2.0571 1.9026 38 1 -0.6210 -3.3450 0.8764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435224989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:04 Heat of formation + Delta-G solvation = 41.936082 kcal Electronic energy + Delta-G solvation = -20869.783325 eV Core-core repulsion = 17713.587698 eV Total energy + Delta-G solvation = -3156.195627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.87379 -40.40066 -38.44439 -37.70844 -34.99168 -33.98265 -32.91284 -29.71648 -28.78013 -28.09010 -27.26736 -24.53898 -22.93438 -22.50938 -21.38755 -20.96236 -20.69870 -18.57171 -18.33755 -17.63829 -17.22141 -16.68763 -16.51677 -16.09243 -15.63389 -15.39898 -14.78740 -14.46508 -14.29430 -13.79788 -13.72583 -13.58218 -13.47955 -12.93481 -12.85764 -12.80236 -12.38228 -12.03725 -12.02447 -12.00455 -11.66633 -11.50632 -11.18621 -10.96790 -10.44833 -10.41709 -10.10016 -9.79925 -9.59186 -8.11655 -6.24373 0.50199 1.09442 1.39118 1.40851 1.49356 1.74406 2.30999 2.36415 2.41873 3.16769 3.25704 3.50696 3.63697 3.73777 4.14859 4.23096 4.25398 4.31355 4.52087 4.64528 4.68664 4.72885 4.82891 4.87810 4.98911 5.01551 5.02909 5.10480 5.19312 5.27460 5.39880 5.42245 5.51082 5.58054 5.68268 5.75817 6.16445 6.35342 6.60586 6.82220 6.90555 7.25307 7.44916 8.96412 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.004609 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.845813 B = 6074.080096 C = 6470.927486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.025 3.975 3 Si 0.947 3.053 4 H -0.284 1.284 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.502 4.502 8 H 0.059 0.941 9 C -0.001 4.001 10 C 0.176 3.824 11 N -0.685 5.685 12 C 0.586 3.414 13 O -0.582 6.582 14 C -0.020 4.020 15 N -0.265 5.265 16 N -0.346 5.346 17 H 0.462 0.538 18 C -0.004 4.004 19 C -0.201 4.201 20 C -0.054 4.054 21 C -0.105 4.105 22 C -0.027 4.027 23 C -0.179 4.179 24 C -0.149 4.149 25 H 0.259 0.741 26 H 0.032 0.968 27 H 0.045 0.955 28 H 0.411 0.589 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.593 -10.679 -15.212 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.175 4.175 3 Si 0.773 3.227 4 H -0.211 1.211 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.540 4.540 8 H 0.077 0.923 9 C -0.002 4.002 10 C 0.052 3.948 11 N -0.333 5.333 12 C 0.371 3.629 13 O -0.461 6.461 14 C -0.178 4.178 15 N -0.102 5.102 16 N -0.062 5.062 17 H 0.310 0.690 18 C -0.132 4.132 19 C -0.211 4.211 20 C -0.092 4.092 21 C -0.143 4.143 22 C -0.066 4.066 23 C -0.216 4.216 24 C -0.188 4.188 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.246 0.754 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.258 -10.296 -14.499 21.599 hybrid contribution 0.188 1.216 0.220 1.249 sum 12.446 -9.080 -14.280 21.007 Atomic orbital electron populations 1.70108 1.07078 1.27319 1.49860 1.25671 0.95521 1.01931 0.94387 0.85729 0.79124 0.80085 0.77779 1.21066 1.21074 1.18714 1.20621 0.92420 0.89686 1.51224 0.92318 1.19068 1.00483 0.94183 0.86453 1.20677 0.85793 0.97223 0.91072 1.45731 1.11295 1.67781 1.08519 1.17418 0.87051 0.76769 0.81661 1.90694 1.27750 1.55309 1.72361 1.21279 0.90897 1.10439 0.95217 1.73695 1.00498 1.19929 1.16043 1.42694 1.10254 1.47051 1.06174 0.69039 1.22862 0.91047 1.04042 0.95216 1.21334 0.97720 1.07790 0.94282 1.20539 0.97192 1.01271 0.90225 1.22475 0.91795 1.04229 0.95772 1.20845 0.99669 1.03054 0.83049 1.23037 0.98602 0.96049 1.03938 1.22391 0.92477 1.01616 1.02278 0.93216 0.94927 0.93657 0.75352 0.90217 0.92559 0.86899 0.90183 0.87533 0.87046 0.89223 0.89715 0.91610 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.93 12.73 21.45 0.27 -52.66 16 2 C 0.03 1.41 5.43 84.65 0.46 1.87 16 3 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.50 -27.03 8.38 25.60 0.21 -26.81 16 8 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.00 -0.06 1.51 -52.93 -0.08 -0.14 16 10 C 0.18 8.64 5.57 86.38 0.48 9.13 16 11 N -0.68 -30.74 5.37 -466.12 -2.50 -33.24 16 12 C 0.59 26.25 7.82 86.75 0.68 26.92 16 13 O -0.58 -29.39 16.91 -3.92 -0.07 -29.45 16 14 C -0.02 -0.73 7.13 42.42 0.30 -0.42 16 15 N -0.26 -8.39 11.94 -48.24 -0.58 -8.97 16 16 N -0.35 -7.47 6.84 -47.56 -0.33 -7.79 16 17 H 0.46 5.65 8.96 -220.01 -1.97 3.67 16 18 C 0.00 -0.08 8.12 41.47 0.34 0.26 16 19 C -0.20 -6.01 6.83 -19.75 -0.13 -6.14 16 20 C -0.05 -1.27 6.78 30.44 0.21 -1.07 16 21 C -0.10 -1.31 7.13 31.61 0.23 -1.09 16 22 C -0.03 -0.29 6.78 30.52 0.21 -0.08 16 23 C -0.18 -7.51 9.94 30.62 0.30 -7.21 16 24 C -0.15 -7.05 9.26 30.62 0.28 -6.77 16 25 H 0.26 14.57 8.32 -92.71 -0.77 13.80 16 26 H 0.03 1.85 8.09 -2.39 -0.02 1.83 16 27 H 0.05 2.11 8.11 -2.39 -0.02 2.09 16 28 H 0.41 17.54 7.98 -92.71 -0.74 16.80 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 36 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.07 3.34 8.14 -2.38 -0.02 3.33 16 38 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -73.34 326.00 0.70 -72.65 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -1.62 Total: 24.79 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 3.48 Total: -11.55 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -3.13 Total: -102.66 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.07 Total: -29.45 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -73.34 0.70 -72.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435224989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.584 kcal (2) G-P(sol) polarization free energy of solvation -73.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds