Wall clock time and date at job start Mon Mar 30 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00508 * 2 1 4 4 H 1.48501 * 109.47104 * 271.30883 * 3 2 1 5 5 H 1.48500 * 109.47206 * 31.30748 * 3 2 1 6 6 H 1.48504 * 109.47421 * 151.30794 * 3 2 1 7 7 C 1.37886 * 119.99386 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99913 * 358.80854 * 7 2 1 9 9 C 1.50702 * 119.99552 * 178.80110 * 7 2 1 10 10 C 1.53000 * 115.54909 * 87.41767 * 9 7 2 11 11 N 1.46492 * 109.47390 * 56.04575 * 10 9 7 12 12 C 1.34780 * 120.00358 * 185.06774 * 11 10 9 13 13 O 1.21608 * 119.99534 * 4.99362 * 12 11 10 14 14 C 1.47421 * 120.00268 * 184.99597 * 12 11 10 15 15 C 1.38047 * 126.41823 * 354.92937 * 14 12 11 16 16 N 1.34259 * 107.42248 * 180.25531 * 15 14 12 17 17 H 0.96994 * 125.75603 * 179.76836 * 16 15 14 18 18 N 1.39941 * 108.48738 * 359.77008 * 16 15 14 19 19 C 1.30448 * 108.89688 * 359.97438 * 18 16 15 20 20 C 1.50703 * 125.98558 * 179.97438 * 19 18 16 21 21 C 1.53000 * 117.49975 * 351.40453 * 20 19 18 22 22 C 1.52992 * 117.49891 * 60.03121 * 20 19 18 23 23 C 1.52994 * 117.49773 * 233.08259 * 9 7 2 24 24 C 1.53001 * 117.49870 * 301.74144 * 9 7 2 25 25 H 0.97004 * 119.99542 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46740 * 296.04827 * 10 9 7 27 27 H 1.08996 * 109.47117 * 176.05150 * 10 9 7 28 28 H 0.97004 * 119.99927 * 5.07639 * 11 10 9 29 29 H 1.08007 * 126.28607 * 0.02562 * 15 14 12 30 30 H 1.09008 * 115.55900 * 205.72002 * 20 19 18 31 31 H 1.08993 * 117.50325 * 214.98002 * 21 20 19 32 32 H 1.09008 * 117.49883 * 0.02562 * 21 20 19 33 33 H 1.09005 * 117.50235 * 359.97438 * 22 20 19 34 34 H 1.08998 * 117.50255 * 144.99826 * 22 20 19 35 35 H 1.09005 * 117.50157 * 215.00803 * 23 9 7 36 36 H 1.09005 * 117.50053 * 0.02562 * 23 9 7 37 37 H 1.08992 * 117.50250 * 359.97438 * 24 9 7 38 38 H 1.09004 * 117.49405 * 144.97416 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4691 2.0623 -1.3997 5 1 1.4609 2.6445 0.7275 6 1 3.5604 1.4322 0.6722 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1293 0.0204 9 6 3.5112 -1.1944 -0.0268 10 6 4.1960 -1.1173 1.3393 11 7 3.7257 -2.2178 2.1841 12 6 4.1167 -2.2935 3.4717 13 8 4.7852 -1.4013 3.9576 14 6 3.7340 -3.4578 4.2911 15 6 2.9028 -4.4914 3.9086 16 7 2.8121 -5.3391 4.9458 17 1 2.2913 -6.1571 4.9654 18 7 3.5958 -4.8434 5.9939 19 6 4.1518 -3.7262 5.6139 20 6 5.0726 -2.8685 6.4430 21 6 5.2332 -3.2287 7.9213 22 6 6.3735 -3.5031 6.9387 23 6 4.1979 -2.0214 -1.1154 24 6 4.1966 -0.4931 -1.2013 25 1 -0.4850 0.8401 0.0004 26 1 3.9541 -0.1661 1.8137 27 1 5.2754 -1.1945 1.2095 28 1 3.1330 -2.8921 1.8168 29 1 2.4123 -4.5967 2.9521 30 1 5.0976 -1.8117 6.1769 31 1 5.3639 -2.4090 8.6277 32 1 4.6731 -4.0863 8.2941 33 1 6.5632 -4.5412 6.6655 34 1 7.2545 -2.8641 6.9984 35 1 5.1375 -2.5106 -0.8585 36 1 3.5598 -2.5651 -1.8122 37 1 3.5578 -0.0320 -1.9544 38 1 5.1352 0.0236 -1.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435955402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:19 Heat of formation + Delta-G solvation = 84.212886 kcal Electronic energy + Delta-G solvation = -20897.327085 eV Core-core repulsion = 17742.964718 eV Total energy + Delta-G solvation = -3154.362367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36029 -38.67987 -37.07387 -36.87632 -33.37894 -32.14947 -31.37828 -30.32281 -26.64473 -25.24759 -23.95511 -22.62855 -22.28399 -21.70710 -19.66906 -19.49099 -19.13454 -18.13552 -16.45335 -16.00166 -15.56571 -15.15046 -14.99893 -14.77646 -14.57095 -14.02938 -13.79884 -13.25276 -12.82027 -12.74834 -12.40786 -12.08160 -11.88049 -11.53003 -11.17795 -11.11628 -10.92090 -10.74221 -10.52214 -10.33404 -10.19117 -9.69292 -9.35124 -9.26608 -9.17564 -8.74510 -8.64584 -8.59632 -8.15229 -6.18149 -4.22876 1.61375 2.18710 2.69125 3.28473 3.39398 3.44620 3.80571 3.86829 4.07127 4.39389 4.41881 4.66001 4.89169 4.97180 5.04781 5.11363 5.13251 5.48872 5.59677 5.65550 5.69716 5.76574 5.85966 6.00805 6.06673 6.15088 6.25971 6.31232 6.41635 6.43979 6.56447 6.70859 6.98430 7.06688 7.08736 7.21634 7.55523 7.66409 8.27963 8.37623 8.80383 8.88768 9.45633 10.92992 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.004725 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.617197 B = 5923.980932 C = 6106.152861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.081 3.919 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.255 1.255 7 C -0.490 4.490 8 H 0.077 0.923 9 C -0.016 4.016 10 C 0.157 3.843 11 N -0.698 5.698 12 C 0.585 3.415 13 O -0.557 6.557 14 C -0.272 4.272 15 C 0.106 3.894 16 N -0.464 5.464 17 H 0.443 0.557 18 N -0.304 5.304 19 C 0.163 3.837 20 C -0.080 4.080 21 C -0.170 4.170 22 C -0.161 4.161 23 C -0.179 4.179 24 C -0.193 4.193 25 H 0.265 0.735 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.401 0.599 29 H 0.190 0.810 30 H 0.142 0.858 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.834 -9.551 8.425 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.122 4.122 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.179 1.179 7 C -0.527 4.527 8 H 0.095 0.905 9 C -0.018 4.018 10 C 0.033 3.967 11 N -0.347 5.347 12 C 0.372 3.628 13 O -0.437 6.437 14 C -0.287 4.287 15 C -0.046 4.046 16 N -0.169 5.169 17 H 0.287 0.713 18 N -0.127 5.127 19 C -0.005 4.005 20 C -0.100 4.100 21 C -0.208 4.208 22 C -0.199 4.199 23 C -0.217 4.217 24 C -0.231 4.231 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.235 0.765 29 H 0.207 0.793 30 H 0.159 0.841 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.010 -9.630 9.677 15.828 hybrid contribution -0.368 0.730 -1.137 1.400 sum 7.643 -8.900 8.540 14.510 Atomic orbital electron populations 1.69880 1.06404 1.27301 1.49599 1.24955 0.94566 0.99186 0.93476 0.86870 0.80908 0.83270 0.78340 1.20477 1.22073 1.17922 1.20134 0.86005 0.94410 1.52193 0.90480 1.19635 0.95384 1.00663 0.86069 1.21103 0.95293 0.89576 0.90737 1.45632 1.49793 1.29243 1.10025 1.17204 0.79648 0.84646 0.81315 1.90681 1.41109 1.39766 1.72104 1.20358 1.10554 1.00644 0.97153 1.23271 0.97147 0.90101 0.94128 1.46007 1.38955 1.21750 1.10173 0.71299 1.77022 1.11875 1.13647 1.10111 1.21403 0.95042 0.91898 0.92116 1.20560 0.96273 0.99286 0.93872 1.22997 1.02348 1.03679 0.91740 1.22942 0.92111 1.01678 1.03185 1.22869 1.01059 0.92995 1.04738 1.22934 1.01469 0.94995 1.03723 0.92484 0.91549 0.93915 0.76455 0.79337 0.84051 0.88390 0.88253 0.88936 0.88170 0.90872 0.89481 0.89203 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.04 13.96 55.43 0.77 -25.26 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.26 24.91 -169.99 -4.23 17.03 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -5.95 5.59 56.52 0.32 -5.63 16 7 C -0.49 -12.47 8.88 -34.44 -0.31 -12.77 16 8 H 0.08 2.08 8.06 -52.49 -0.42 1.66 16 9 C -0.02 -0.35 0.93 -155.66 -0.14 -0.49 16 10 C 0.16 3.24 5.34 -4.05 -0.02 3.22 16 11 N -0.70 -13.01 5.35 -61.39 -0.33 -13.34 16 12 C 0.59 11.06 7.81 -12.52 -0.10 10.96 16 13 O -0.56 -12.02 14.95 5.27 0.08 -11.94 16 14 C -0.27 -4.33 6.12 -105.07 -0.64 -4.97 16 15 C 0.11 1.28 11.52 -16.56 -0.19 1.09 16 16 N -0.46 -5.08 7.29 30.85 0.22 -4.86 16 17 H 0.44 3.07 8.96 -182.72 -1.64 1.44 16 18 N -0.30 -4.27 12.22 33.90 0.41 -3.85 16 19 C 0.16 2.52 6.79 -82.02 -0.56 1.96 16 20 C -0.08 -1.15 5.70 -91.77 -0.52 -1.67 16 21 C -0.17 -1.95 10.14 -26.73 -0.27 -2.22 16 22 C -0.16 -1.88 10.23 -26.73 -0.27 -2.16 16 23 C -0.18 -3.33 9.93 -26.70 -0.27 -3.60 16 24 C -0.19 -3.88 7.59 -26.69 -0.20 -4.09 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 26 H 0.07 1.54 6.44 -51.92 -0.33 1.21 16 27 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.40 6.75 7.12 -40.82 -0.29 6.46 16 29 H 0.19 1.69 7.48 -52.48 -0.39 1.30 16 30 H 0.14 2.26 6.65 -51.92 -0.35 1.92 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 1.15 7.90 -51.92 -0.41 0.74 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.09 1.90 7.21 -51.93 -0.37 1.52 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 320.02 15.07 4.82 4.82 Total: -1.00 -32.10 320.02 -8.23 -40.33 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.39 Total: 9.70 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -3.59 Total: -12.63 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 1.08 Total: -47.31 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.23 Total: 17.03 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.10 -8.23 -40.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435955402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.545 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds