Wall clock time and date at job start Mon Mar 30 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00508 * 2 1 4 4 H 1.48501 * 109.47104 * 271.30883 * 3 2 1 5 5 H 1.48500 * 109.47206 * 31.30748 * 3 2 1 6 6 H 1.48504 * 109.47421 * 151.30794 * 3 2 1 7 7 C 1.37886 * 119.99386 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99913 * 358.80854 * 7 2 1 9 9 C 1.50702 * 119.99552 * 178.80110 * 7 2 1 10 10 C 1.53000 * 115.54909 * 87.41767 * 9 7 2 11 11 N 1.46492 * 109.47390 * 56.04575 * 10 9 7 12 12 C 1.34780 * 120.00358 * 185.06774 * 11 10 9 13 13 O 1.21608 * 119.99534 * 4.99362 * 12 11 10 14 14 C 1.47421 * 120.00268 * 184.99597 * 12 11 10 15 15 C 1.38047 * 126.41823 * 354.92937 * 14 12 11 16 16 N 1.34259 * 107.42248 * 180.25531 * 15 14 12 17 17 H 0.96994 * 125.75603 * 179.76836 * 16 15 14 18 18 N 1.39941 * 108.48738 * 359.77008 * 16 15 14 19 19 C 1.30448 * 108.89688 * 359.97438 * 18 16 15 20 20 C 1.50703 * 125.98558 * 179.97438 * 19 18 16 21 21 C 1.53000 * 117.49975 * 351.40453 * 20 19 18 22 22 C 1.52992 * 117.49891 * 60.03121 * 20 19 18 23 23 C 1.52994 * 117.49773 * 233.08259 * 9 7 2 24 24 C 1.53001 * 117.49870 * 301.74144 * 9 7 2 25 25 H 0.97004 * 119.99542 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46740 * 296.04827 * 10 9 7 27 27 H 1.08996 * 109.47117 * 176.05150 * 10 9 7 28 28 H 0.97004 * 119.99927 * 5.07639 * 11 10 9 29 29 H 1.08007 * 126.28607 * 0.02562 * 15 14 12 30 30 H 1.09008 * 115.55900 * 205.72002 * 20 19 18 31 31 H 1.08993 * 117.50325 * 214.98002 * 21 20 19 32 32 H 1.09008 * 117.49883 * 0.02562 * 21 20 19 33 33 H 1.09005 * 117.50235 * 359.97438 * 22 20 19 34 34 H 1.08998 * 117.50255 * 144.99826 * 22 20 19 35 35 H 1.09005 * 117.50157 * 215.00803 * 23 9 7 36 36 H 1.09005 * 117.50053 * 0.02562 * 23 9 7 37 37 H 1.08992 * 117.50250 * 359.97438 * 24 9 7 38 38 H 1.09004 * 117.49405 * 144.97416 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4691 2.0623 -1.3997 5 1 1.4609 2.6445 0.7275 6 1 3.5604 1.4322 0.6722 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1293 0.0204 9 6 3.5112 -1.1944 -0.0268 10 6 4.1960 -1.1173 1.3393 11 7 3.7257 -2.2178 2.1841 12 6 4.1167 -2.2935 3.4717 13 8 4.7852 -1.4013 3.9576 14 6 3.7340 -3.4578 4.2911 15 6 2.9028 -4.4914 3.9086 16 7 2.8121 -5.3391 4.9458 17 1 2.2913 -6.1571 4.9654 18 7 3.5958 -4.8434 5.9939 19 6 4.1518 -3.7262 5.6139 20 6 5.0726 -2.8685 6.4430 21 6 5.2332 -3.2287 7.9213 22 6 6.3735 -3.5031 6.9387 23 6 4.1979 -2.0214 -1.1154 24 6 4.1966 -0.4931 -1.2013 25 1 -0.4850 0.8401 0.0004 26 1 3.9541 -0.1661 1.8137 27 1 5.2754 -1.1945 1.2095 28 1 3.1330 -2.8921 1.8168 29 1 2.4123 -4.5967 2.9521 30 1 5.0976 -1.8117 6.1769 31 1 5.3639 -2.4090 8.6277 32 1 4.6731 -4.0863 8.2941 33 1 6.5632 -4.5412 6.6655 34 1 7.2545 -2.8641 6.9984 35 1 5.1375 -2.5106 -0.8585 36 1 3.5598 -2.5651 -1.8122 37 1 3.5578 -0.0320 -1.9544 38 1 5.1352 0.0236 -1.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435955402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:18 Heat of formation + Delta-G solvation = 61.849727 kcal Electronic energy + Delta-G solvation = -20898.296824 eV Core-core repulsion = 17742.964718 eV Total energy + Delta-G solvation = -3155.332107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.43435 -40.17225 -38.58120 -37.96600 -34.91856 -34.18280 -32.42294 -31.48299 -28.31504 -27.07754 -24.97751 -23.86836 -23.27985 -23.19053 -21.19068 -20.87544 -20.29331 -19.41896 -18.22354 -17.38166 -16.91324 -16.52542 -16.41526 -16.15911 -15.63371 -15.36911 -15.36652 -14.74758 -14.55191 -14.23556 -13.93435 -13.73321 -13.07894 -12.92024 -12.58972 -12.40814 -12.18449 -12.14063 -11.95978 -11.92498 -11.55276 -11.36884 -10.96078 -10.82061 -10.60663 -10.29989 -10.26956 -9.98221 -9.59195 -8.27639 -6.32379 0.55716 1.02508 1.34564 1.41975 1.51404 1.78581 2.38673 2.43763 2.48521 3.05336 3.09252 3.28509 3.41785 3.63233 4.03876 4.05933 4.11450 4.18354 4.37806 4.41515 4.43929 4.45729 4.60652 4.69092 4.76654 4.90542 4.93136 4.97078 5.14473 5.22699 5.27315 5.33608 5.36570 5.53491 5.67676 5.74583 6.26055 6.31588 6.50708 6.75165 6.86664 7.38328 7.45418 8.86445 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.004725 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.617197 B = 5923.980932 C = 6106.152861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.030 3.970 3 Si 0.922 3.078 4 H -0.268 1.268 5 H -0.307 1.307 6 H -0.242 1.242 7 C -0.472 4.472 8 H 0.053 0.947 9 C -0.040 4.040 10 C 0.165 3.835 11 N -0.696 5.696 12 C 0.584 3.416 13 O -0.592 6.592 14 C -0.313 4.313 15 C 0.134 3.866 16 N -0.444 5.444 17 H 0.462 0.538 18 N -0.315 5.315 19 C 0.152 3.848 20 C -0.111 4.111 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.196 4.196 25 H 0.263 0.737 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.409 0.591 29 H 0.223 0.777 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.292 -11.104 8.429 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.169 4.169 3 Si 0.749 3.251 4 H -0.193 1.193 5 H -0.234 1.234 6 H -0.165 1.165 7 C -0.510 4.510 8 H 0.071 0.929 9 C -0.042 4.042 10 C 0.041 3.959 11 N -0.346 5.346 12 C 0.372 3.628 13 O -0.475 6.475 14 C -0.328 4.328 15 C -0.021 4.021 16 N -0.150 5.150 17 H 0.311 0.689 18 N -0.138 5.138 19 C -0.015 4.015 20 C -0.131 4.131 21 C -0.190 4.190 22 C -0.187 4.187 23 C -0.187 4.187 24 C -0.234 4.234 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.245 0.755 29 H 0.239 0.761 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.474 -11.238 9.681 17.600 hybrid contribution -0.854 1.084 -1.132 1.785 sum 8.620 -10.155 8.549 15.828 Atomic orbital electron populations 1.69999 1.07908 1.27675 1.52665 1.25620 0.94998 1.02142 0.94110 0.86156 0.80268 0.80002 0.78720 1.19337 1.23449 1.16529 1.20337 0.88306 0.92970 1.49356 0.92892 1.19486 0.93177 1.04192 0.87303 1.20871 0.96061 0.88941 0.90049 1.45565 1.50055 1.28930 1.10009 1.17607 0.78850 0.85044 0.81252 1.90653 1.42766 1.41313 1.72719 1.20252 1.13571 1.01350 0.97638 1.23645 0.94969 0.88457 0.94990 1.46051 1.37829 1.21973 1.09140 0.68926 1.76979 1.12421 1.13364 1.11021 1.21581 0.95347 0.92388 0.92181 1.20502 0.98408 0.98257 0.95965 1.23054 1.01517 1.03948 0.90469 1.23011 0.91814 1.01707 1.02169 1.22905 1.01558 0.92212 1.01989 1.22998 1.01846 0.96455 1.02069 0.92846 0.94636 0.92376 0.75504 0.76103 0.86520 0.86731 0.88190 0.88765 0.86872 0.87823 0.89428 0.90468 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.12 13.96 21.45 0.30 -55.82 16 2 C 0.03 1.62 5.47 84.66 0.46 2.08 16 3 Si 0.92 43.89 24.91 68.60 1.71 45.59 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.31 -15.14 7.11 99.48 0.71 -14.43 16 6 H -0.24 -10.90 5.59 99.48 0.56 -10.35 16 7 C -0.47 -23.92 8.88 25.60 0.23 -23.69 16 8 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 9 C -0.04 -1.66 0.93 -52.93 -0.05 -1.71 16 10 C 0.17 6.64 5.34 86.38 0.46 7.10 16 11 N -0.70 -25.32 5.35 -466.38 -2.49 -27.81 16 12 C 0.58 21.98 7.81 86.66 0.68 22.66 16 13 O -0.59 -26.08 14.95 -4.06 -0.06 -26.14 16 14 C -0.31 -9.71 6.12 -20.15 -0.12 -9.83 16 15 C 0.13 2.92 11.52 84.28 0.97 3.89 16 16 N -0.44 -8.57 7.29 -56.31 -0.41 -8.98 16 17 H 0.46 4.94 8.96 -213.43 -1.91 3.03 16 18 N -0.32 -8.33 12.22 -46.67 -0.57 -8.90 16 19 C 0.15 4.61 6.79 43.52 0.30 4.91 16 20 C -0.11 -3.18 5.70 -11.54 -0.07 -3.25 16 21 C -0.15 -3.32 10.14 30.60 0.31 -3.01 16 22 C -0.15 -3.32 10.23 30.59 0.31 -3.01 16 23 C -0.15 -5.06 9.93 30.62 0.30 -4.75 16 24 C -0.20 -7.33 7.59 30.62 0.23 -7.10 16 25 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.04 1.64 6.44 -2.38 -0.02 1.62 16 27 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 28 H 0.41 13.20 7.12 -92.71 -0.66 12.54 16 29 H 0.22 3.23 7.48 -2.91 -0.02 3.20 16 30 H 0.12 3.90 6.65 -2.38 -0.02 3.89 16 31 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.10 2.17 7.90 -2.38 -0.02 2.15 16 33 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 36 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 37 H 0.08 3.10 7.21 -2.39 -0.02 3.08 16 38 H 0.10 3.20 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -70.85 320.02 0.87 -69.98 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -1.62 Total: 27.80 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 4.02 Total: -15.73 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -3.18 Total: -101.51 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.06 Total: -26.14 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.71 Total: 45.59 kcal Total: -70.85 0.87 -69.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435955402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.828 kcal (2) G-P(sol) polarization free energy of solvation -70.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds