Wall clock time and date at job start Mon Mar 30 2020 01:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42099 * 108.57913 * 2 1 4 4 O 1.42098 * 108.57832 * 228.96794 * 2 1 3 5 5 C 1.81406 * 101.91926 * 114.48233 * 2 1 3 6 6 H 1.08996 * 109.54696 * 300.17657 * 5 2 1 7 7 C 1.50754 * 109.61779 * 60.41228 * 5 2 1 8 8 C 1.54171 * 112.60448 * 212.92578 * 7 5 2 9 9 C 1.53821 * 111.97074 * 318.48614 * 8 7 5 10 10 C 1.50815 * 111.62317 * 319.04119 * 9 8 7 11 11 N 1.47637 * 108.05065 * 95.05668 * 10 9 8 12 12 C 1.46902 * 110.99986 * 150.34914 * 11 10 9 13 13 C 1.53000 * 109.46963 * 204.17887 * 12 11 10 14 14 C 1.50701 * 109.47074 * 179.02215 * 13 12 11 15 15 H 1.08005 * 120.00122 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00462 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99283 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00317 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47242 * 60.00028 * 18 16 14 20 20 H 1.48504 * 109.46909 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46920 * 299.99768 * 18 16 14 22 22 C 1.39773 * 114.76131 * 277.20270 * 11 10 9 23 23 H 1.09006 * 109.46702 * 305.51633 * 1 2 3 24 24 H 1.08993 * 109.47093 * 65.51690 * 1 2 3 25 25 H 1.08999 * 109.47155 * 185.51614 * 1 2 3 26 26 H 1.08996 * 108.85470 * 333.72292 * 7 5 2 27 27 H 1.08997 * 108.86147 * 92.12011 * 7 5 2 28 28 H 1.08995 * 108.98699 * 79.12703 * 8 7 5 29 29 H 1.09007 * 108.98338 * 197.92998 * 8 7 5 30 30 H 1.08993 * 109.05306 * 79.59975 * 9 8 7 31 31 H 1.09001 * 109.05100 * 198.49425 * 9 8 7 32 32 H 1.09006 * 109.74948 * 335.42224 * 10 9 8 33 33 H 1.08997 * 109.75113 * 214.69732 * 10 9 8 34 34 H 1.09005 * 109.46953 * 324.17630 * 12 11 10 35 35 H 1.09000 * 109.47126 * 84.17864 * 12 11 10 36 36 H 1.09002 * 109.46910 * 299.01719 * 13 12 11 37 37 H 1.09000 * 109.47415 * 59.01970 * 13 12 11 38 38 H 0.97004 * 119.99513 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.02420 * 182.86642 * 22 11 10 40 40 H 1.09004 * 109.01659 * 301.76277 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0160 5 6 2.1887 -0.7356 1.6154 6 1 1.7588 -0.1195 2.4051 7 6 1.6072 -2.1246 1.6861 8 6 1.1466 -2.5025 3.1081 9 6 2.1466 -2.0364 4.1798 10 6 3.5730 -2.2594 3.7435 11 7 4.0688 -1.0053 3.1425 12 6 5.5190 -0.8680 3.3323 13 6 5.9037 0.6116 3.2699 14 6 7.3879 0.7544 3.4886 15 1 7.9961 -0.1225 3.6549 16 6 7.9696 2.0044 3.4752 17 7 7.2290 3.0721 3.2721 18 14 9.8094 2.1813 3.7455 19 1 10.5390 1.4348 2.6892 20 1 10.1828 3.6174 3.6851 21 1 10.1690 1.6325 5.0777 22 6 3.7194 -0.8204 1.8018 23 1 -0.3633 0.5971 0.8365 24 1 -0.3633 0.4259 -0.9352 25 1 -0.3633 -1.0229 0.0988 26 1 0.7528 -2.1836 1.0119 27 1 2.3619 -2.8397 1.3587 28 1 0.1785 -2.0405 3.3017 29 1 1.0410 -3.5856 3.1705 30 1 1.9947 -0.9741 4.3703 31 1 1.9655 -2.5910 5.1006 32 1 3.6115 -3.0614 3.0063 33 1 4.1854 -2.5216 4.6062 34 1 5.7985 -1.2754 4.3040 35 1 6.0416 -1.4127 2.5460 36 1 5.6400 1.0146 2.2921 37 1 5.3678 1.1593 4.0452 38 1 7.6384 3.9515 3.2623 39 1 4.1731 0.1024 1.4404 40 1 4.1016 -1.6569 1.2166 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444791011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:29 Heat of formation + Delta-G solvation = -70.794774 kcal Electronic energy + Delta-G solvation = -20482.734636 eV Core-core repulsion = 17424.801832 eV Total energy + Delta-G solvation = -3057.932804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.34086 -36.93779 -35.95069 -35.06371 -32.83932 -32.39575 -29.95290 -29.46997 -26.35872 -25.27386 -24.03361 -21.49217 -20.14021 -19.74661 -18.68843 -17.15611 -16.36387 -16.21268 -15.78925 -15.31934 -15.05457 -14.71222 -14.51118 -14.22383 -13.69433 -13.38551 -13.29514 -12.78756 -12.39438 -12.30777 -12.20255 -12.04062 -11.99834 -11.90354 -11.26446 -11.15775 -11.05577 -10.91107 -10.86444 -10.53503 -10.49276 -10.42455 -10.18353 -9.78311 -9.37208 -9.09191 -8.28280 -7.70621 -5.94094 -3.97426 -0.02333 2.73322 3.36937 3.41469 3.43381 3.61354 3.93798 4.28692 4.43210 4.46839 4.56946 4.65176 4.78863 4.90534 4.98393 5.15856 5.24737 5.40923 5.45157 5.47417 5.61590 5.69382 5.74310 5.78731 5.91154 5.93622 6.07503 6.20526 6.28683 6.40268 6.51932 6.97910 7.48437 7.70003 7.81742 7.97174 8.12504 8.46602 9.09638 9.66062 11.17031 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.005168 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.548569 B = 5416.753802 C = 6369.805172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.418 3.582 3 O -0.929 6.929 4 O -0.941 6.941 5 C -0.568 4.568 6 H 0.149 0.851 7 C -0.103 4.103 8 C -0.111 4.111 9 C -0.120 4.120 10 C 0.062 3.938 11 N -0.550 5.550 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.525 4.525 15 H 0.053 0.947 16 C 0.059 3.941 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.102 3.898 23 H 0.129 0.871 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.025 0.975 36 H 0.018 0.982 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.093 0.907 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 -11.045 -2.434 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.600 3.400 3 O -0.926 6.926 4 O -0.938 6.938 5 C -0.678 4.678 6 H 0.167 0.833 7 C -0.141 4.141 8 C -0.149 4.149 9 C -0.158 4.158 10 C -0.065 4.065 11 N -0.275 5.275 12 C -0.059 4.059 13 C -0.012 4.012 14 C -0.564 4.564 15 H 0.071 0.929 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.030 4.030 23 H 0.148 0.852 24 H 0.146 0.854 25 H 0.146 0.854 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.036 0.964 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -16.466 -10.192 -2.897 19.581 hybrid contribution 0.697 -0.641 0.350 1.009 sum -15.769 -10.833 -2.547 19.301 Atomic orbital electron populations 1.30326 1.27585 1.11292 1.11636 1.08114 0.78172 0.75973 0.77781 1.93646 1.78509 1.34121 1.86292 1.93569 1.78807 1.67128 1.54269 1.30236 1.06860 1.08149 1.22566 0.83309 1.21220 1.00479 0.93759 0.98682 1.21877 0.98844 1.00792 0.93434 1.21453 0.94236 1.02877 0.97217 1.21853 0.95738 0.90183 0.98745 1.58806 1.16564 1.34750 1.17349 1.22421 0.82329 1.01685 0.99484 1.19132 0.95626 0.88590 0.97854 1.21127 0.93197 0.92475 1.49595 0.92868 1.24996 0.97950 0.95993 0.95314 1.69975 1.35386 0.98134 1.49413 0.86663 0.85719 0.76944 0.78660 1.20298 1.21277 1.20304 1.20556 0.88617 1.02576 0.91208 0.85226 0.85440 0.85423 0.92006 0.90274 0.92016 0.91893 0.90320 0.92102 0.94520 0.90893 0.91775 0.95701 0.96416 0.95579 0.92895 0.88941 0.95020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.71 10.25 101.05 1.04 -3.68 16 2 S 2.42 29.88 4.73 -107.50 -0.51 29.37 16 3 O -0.93 -15.99 18.02 -57.83 -1.04 -17.03 16 4 O -0.94 -14.32 17.97 -57.83 -1.04 -15.36 16 5 C -0.57 -6.86 2.30 -27.10 -0.06 -6.92 16 6 H 0.15 1.63 7.11 -51.93 -0.37 1.26 16 7 C -0.10 -0.99 4.71 -27.24 -0.13 -1.12 16 8 C -0.11 -0.97 5.91 -25.69 -0.15 -1.12 16 9 C -0.12 -1.32 5.41 -27.40 -0.15 -1.47 16 10 C 0.06 0.84 5.37 -4.51 -0.02 0.82 16 11 N -0.55 -9.51 3.88 -239.99 -0.93 -10.44 16 12 C 0.07 1.38 4.97 -3.82 -0.02 1.36 16 13 C 0.03 0.67 5.03 -27.88 -0.14 0.53 16 14 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 15 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.10 1.68 4.16 -6.74 -0.03 1.65 16 23 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 24 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.13 0.63 6.50 -51.92 -0.34 0.30 16 26 H 0.06 0.41 5.71 -51.93 -0.30 0.12 16 27 H 0.08 0.82 6.57 -51.93 -0.34 0.48 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.98 7.26 -51.93 -0.38 0.60 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.47 6.66 -51.93 -0.35 0.12 16 33 H 0.07 0.98 7.39 -51.93 -0.38 0.60 16 34 H 0.06 1.28 7.43 -51.93 -0.39 0.90 16 35 H 0.02 0.51 7.98 -51.93 -0.41 0.10 16 36 H 0.02 0.50 6.73 -51.93 -0.35 0.15 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.09 1.79 6.22 -51.93 -0.32 1.47 16 40 H 0.03 0.51 7.54 -51.93 -0.39 0.12 16 LS Contribution 319.43 15.07 4.81 4.81 Total: -1.00 -35.97 319.43 -9.46 -45.43 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -6.39 Total: -3.45 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -0.08 Total: -23.65 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.20 Total: -37.06 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -2.08 Total: -32.39 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 29.88 SS G_CDS: -0.51 Total: 29.37 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.97 -9.46 -45.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444791011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.367 kcal (2) G-P(sol) polarization free energy of solvation -35.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds