Wall clock time and date at job start Mon Mar 30 2020 01:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42099 * 108.57913 * 2 1 4 4 O 1.42098 * 108.57832 * 228.96794 * 2 1 3 5 5 C 1.81406 * 101.91926 * 114.48233 * 2 1 3 6 6 H 1.08996 * 109.54696 * 300.17657 * 5 2 1 7 7 C 1.50754 * 109.61779 * 60.41228 * 5 2 1 8 8 C 1.54171 * 112.60448 * 212.92578 * 7 5 2 9 9 C 1.53821 * 111.97074 * 318.48614 * 8 7 5 10 10 C 1.50815 * 111.62317 * 319.04119 * 9 8 7 11 11 N 1.47637 * 108.05065 * 95.05668 * 10 9 8 12 12 C 1.46902 * 110.99986 * 150.34914 * 11 10 9 13 13 C 1.53000 * 109.46963 * 204.17887 * 12 11 10 14 14 C 1.50701 * 109.47074 * 179.02215 * 13 12 11 15 15 H 1.08005 * 120.00122 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00462 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99283 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00317 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47242 * 60.00028 * 18 16 14 20 20 H 1.48504 * 109.46909 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46920 * 299.99768 * 18 16 14 22 22 C 1.39773 * 114.76131 * 277.20270 * 11 10 9 23 23 H 1.09006 * 109.46702 * 305.51633 * 1 2 3 24 24 H 1.08993 * 109.47093 * 65.51690 * 1 2 3 25 25 H 1.08999 * 109.47155 * 185.51614 * 1 2 3 26 26 H 1.08996 * 108.85470 * 333.72292 * 7 5 2 27 27 H 1.08997 * 108.86147 * 92.12011 * 7 5 2 28 28 H 1.08995 * 108.98699 * 79.12703 * 8 7 5 29 29 H 1.09007 * 108.98338 * 197.92998 * 8 7 5 30 30 H 1.08993 * 109.05306 * 79.59975 * 9 8 7 31 31 H 1.09001 * 109.05100 * 198.49425 * 9 8 7 32 32 H 1.09006 * 109.74948 * 335.42224 * 10 9 8 33 33 H 1.08997 * 109.75113 * 214.69732 * 10 9 8 34 34 H 1.09005 * 109.46953 * 324.17630 * 12 11 10 35 35 H 1.09000 * 109.47126 * 84.17864 * 12 11 10 36 36 H 1.09002 * 109.46910 * 299.01719 * 13 12 11 37 37 H 1.09000 * 109.47415 * 59.01970 * 13 12 11 38 38 H 0.97004 * 119.99513 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.02420 * 182.86642 * 22 11 10 40 40 H 1.09004 * 109.01659 * 301.76277 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0160 5 6 2.1887 -0.7356 1.6154 6 1 1.7588 -0.1195 2.4051 7 6 1.6072 -2.1246 1.6861 8 6 1.1466 -2.5025 3.1081 9 6 2.1466 -2.0364 4.1798 10 6 3.5730 -2.2594 3.7435 11 7 4.0688 -1.0053 3.1425 12 6 5.5190 -0.8680 3.3323 13 6 5.9037 0.6116 3.2699 14 6 7.3879 0.7544 3.4886 15 1 7.9961 -0.1225 3.6549 16 6 7.9696 2.0044 3.4752 17 7 7.2290 3.0721 3.2721 18 14 9.8094 2.1813 3.7455 19 1 10.5390 1.4348 2.6892 20 1 10.1828 3.6174 3.6851 21 1 10.1690 1.6325 5.0777 22 6 3.7194 -0.8204 1.8018 23 1 -0.3633 0.5971 0.8365 24 1 -0.3633 0.4259 -0.9352 25 1 -0.3633 -1.0229 0.0988 26 1 0.7528 -2.1836 1.0119 27 1 2.3619 -2.8397 1.3587 28 1 0.1785 -2.0405 3.3017 29 1 1.0410 -3.5856 3.1705 30 1 1.9947 -0.9741 4.3703 31 1 1.9655 -2.5910 5.1006 32 1 3.6115 -3.0614 3.0063 33 1 4.1854 -2.5216 4.6062 34 1 5.7985 -1.2754 4.3040 35 1 6.0416 -1.4127 2.5460 36 1 5.6400 1.0146 2.2921 37 1 5.3678 1.1593 4.0452 38 1 7.6384 3.9515 3.2623 39 1 4.1731 0.1024 1.4404 40 1 4.1016 -1.6569 1.2166 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444791011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:28 Heat of formation + Delta-G solvation = -98.901583 kcal Electronic energy + Delta-G solvation = -20483.953439 eV Core-core repulsion = 17424.801832 eV Total energy + Delta-G solvation = -3059.151606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53101 -38.05481 -37.05490 -36.40460 -34.84207 -33.39806 -31.64149 -30.34490 -27.75647 -26.31089 -25.77303 -22.98146 -21.72367 -20.63537 -19.69198 -18.69413 -17.97674 -17.30096 -16.91354 -16.58040 -16.39498 -16.22074 -15.71807 -15.55596 -14.76815 -14.48708 -14.19765 -13.98621 -13.92884 -13.51454 -13.28343 -13.20660 -13.15912 -13.05800 -13.00254 -12.81373 -12.61810 -12.25616 -12.07917 -11.83830 -11.79492 -11.43545 -11.34910 -11.30107 -11.20428 -10.97093 -10.54614 -9.12603 -8.19952 -6.32733 -0.95895 1.38652 1.42869 1.50771 1.83492 2.39343 2.62529 3.01818 3.12633 3.13197 3.41487 3.66195 3.97475 4.10502 4.13680 4.17601 4.23813 4.31809 4.35162 4.46173 4.52609 4.68880 4.73148 4.80221 4.85874 4.91146 5.03941 5.06572 5.16391 5.30903 5.41625 5.43699 5.57019 5.64462 5.78003 6.12024 6.30821 6.51919 6.85168 7.36666 8.92162 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.005168 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.548569 B = 5416.753802 C = 6369.805172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.623 4.623 2 S 2.400 3.600 3 O -0.996 6.996 4 O -0.980 6.980 5 C -0.555 4.555 6 H 0.161 0.839 7 C -0.109 4.109 8 C -0.106 4.106 9 C -0.120 4.120 10 C 0.059 3.941 11 N -0.558 5.558 12 C 0.081 3.919 13 C 0.033 3.967 14 C -0.547 4.547 15 H 0.063 0.937 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.969 3.031 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.263 1.263 22 C 0.095 3.905 23 H 0.157 0.843 24 H 0.144 0.856 25 H 0.165 0.835 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.021 0.979 36 H -0.017 1.017 37 H -0.005 1.005 38 H 0.264 0.736 39 H 0.046 0.954 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.037 -13.164 -1.696 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.777 4.777 2 S 2.589 3.411 3 O -0.993 6.993 4 O -0.978 6.978 5 C -0.666 4.666 6 H 0.178 0.822 7 C -0.147 4.147 8 C -0.145 4.145 9 C -0.158 4.158 10 C -0.067 4.067 11 N -0.283 5.283 12 C -0.046 4.046 13 C -0.004 4.004 14 C -0.586 4.586 15 H 0.081 0.919 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.187 1.187 22 C -0.036 4.036 23 H 0.175 0.825 24 H 0.163 0.837 25 H 0.183 0.817 26 H 0.120 0.880 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.039 0.961 36 H 0.001 0.999 37 H 0.014 0.986 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -18.631 -12.336 -2.161 22.449 hybrid contribution 1.275 0.001 0.119 1.281 sum -17.355 -12.335 -2.042 21.390 Atomic orbital electron populations 1.30014 1.19113 1.14597 1.13940 1.08186 0.81466 0.74153 0.77285 1.93568 1.81723 1.37039 1.86967 1.93512 1.81510 1.67248 1.55489 1.30103 1.03237 1.10614 1.22614 0.82162 1.21369 1.01586 0.91116 1.00616 1.21900 0.98978 1.02224 0.91370 1.21449 0.92869 1.02314 0.99146 1.22025 0.97539 0.88475 0.98646 1.58751 1.14023 1.37556 1.17936 1.22055 0.85220 0.97537 0.99809 1.18960 0.94791 0.92003 0.94689 1.21607 0.94409 0.93103 1.49438 0.91905 1.26034 1.03629 0.95519 0.94723 1.70138 1.37881 0.98772 1.50485 0.85445 0.78818 0.77131 0.79291 1.19287 1.20834 1.18714 1.20515 0.92209 1.00194 0.90678 0.82484 0.83718 0.81708 0.88038 0.91317 0.89275 0.89921 0.91986 0.90125 0.93347 0.90944 0.90799 0.96110 0.99856 0.98622 0.92756 0.93567 0.95173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -6.09 10.25 113.37 1.16 -4.93 16 2 S 2.40 59.53 4.73 -56.49 -0.27 59.26 16 3 O -1.00 -36.88 18.02 -127.37 -2.30 -39.18 16 4 O -0.98 -30.50 17.97 -127.37 -2.29 -32.79 16 5 C -0.56 -13.13 2.30 30.35 0.07 -13.06 16 6 H 0.16 3.36 7.11 -2.39 -0.02 3.34 16 7 C -0.11 -1.73 4.71 30.26 0.14 -1.59 16 8 C -0.11 -1.37 5.91 31.27 0.18 -1.19 16 9 C -0.12 -2.33 5.41 30.16 0.16 -2.16 16 10 C 0.06 1.54 5.37 85.45 0.46 2.00 16 11 N -0.56 -20.01 3.88 -913.20 -3.55 -23.56 16 12 C 0.08 3.52 4.97 86.30 0.43 3.95 16 13 C 0.03 1.87 5.03 29.85 0.15 2.02 16 14 C -0.55 -32.49 9.11 25.60 0.23 -32.26 16 15 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 16 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 17 N -0.93 -59.81 13.29 21.45 0.28 -59.52 16 18 Si 0.97 45.81 29.54 68.60 2.03 47.84 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 C 0.10 3.34 4.16 88.08 0.37 3.70 16 23 H 0.16 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.16 0.52 6.50 -2.39 -0.02 0.50 16 26 H 0.10 0.82 5.71 -2.39 -0.01 0.81 16 27 H 0.07 1.27 6.57 -2.39 -0.02 1.26 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.06 1.43 7.26 -2.39 -0.02 1.41 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.16 6.66 -2.38 -0.02 1.14 16 33 H 0.07 1.87 7.39 -2.39 -0.02 1.86 16 34 H 0.07 3.03 7.43 -2.38 -0.02 3.02 16 35 H 0.02 0.91 7.98 -2.39 -0.02 0.89 16 36 H -0.02 -1.05 6.73 -2.39 -0.02 -1.07 16 37 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.05 2.02 6.22 -2.39 -0.01 2.00 16 40 H 0.03 1.04 7.54 -2.39 -0.02 1.02 16 Total: -1.00 -85.44 319.43 -1.25 -86.69 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.01 Total: 4.37 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 3.82 Total: -43.12 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -3.26 Total: -83.08 kcal Atomic # 8 Polarization: -67.38 SS G_CDS: -4.58 Total: -71.97 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 16 Polarization: 59.53 SS G_CDS: -0.27 Total: 59.26 kcal Total: -85.44 -1.25 -86.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444791011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.208 kcal (2) G-P(sol) polarization free energy of solvation -85.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds