Wall clock time and date at job start Mon Mar 30 2020 01:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34240 * 116.99622 * 2 1 4 4 O 1.20823 * 120.00136 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99777 * 180.02562 * 3 2 1 6 6 H 1.09004 * 110.30377 * 324.34902 * 5 3 2 7 7 C 1.54385 * 110.34061 * 202.17781 * 5 3 2 8 8 N 1.48148 * 104.61820 * 217.26268 * 7 5 3 9 9 C 1.36939 * 127.83658 * 219.60717 * 8 7 5 10 10 H 1.07994 * 120.00390 * 17.42349 * 9 8 7 11 11 C 1.38814 * 119.99452 * 197.42006 * 9 8 7 12 12 N 1.31611 * 120.00602 * 8.97831 * 11 9 8 13 13 Si 1.86807 * 119.99515 * 188.97736 * 11 9 8 14 14 H 1.48500 * 109.46962 * 60.00424 * 13 11 9 15 15 H 1.48504 * 109.46797 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47188 * 299.99861 * 13 11 9 17 17 C 1.48142 * 104.32180 * 39.58114 * 8 7 5 18 18 C 1.54279 * 110.34399 * 86.52748 * 5 3 2 19 19 H 1.09001 * 110.34230 * 237.74388 * 18 5 3 20 20 C 1.50698 * 110.34176 * 359.97438 * 18 5 3 21 21 C 1.38243 * 119.99656 * 69.84369 * 20 18 5 22 22 C 1.38237 * 119.99865 * 179.76682 * 21 20 18 23 23 C 1.38233 * 119.99703 * 0.47712 * 22 21 20 24 24 C 1.38232 * 120.00319 * 359.79168 * 23 22 21 25 25 C 1.38234 * 120.00286 * 359.95939 * 24 23 22 26 26 H 1.09005 * 109.47108 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47511 * 59.99714 * 1 2 3 28 28 H 1.08998 * 109.47513 * 299.99592 * 1 2 3 29 29 H 1.08997 * 110.40770 * 336.04457 * 7 5 3 30 30 H 1.08999 * 110.41133 * 98.47368 * 7 5 3 31 31 H 0.97000 * 120.00442 * 179.97438 * 12 11 9 32 32 H 1.08998 * 110.40616 * 79.20264 * 17 8 7 33 33 H 1.08998 * 110.40966 * 201.63154 * 17 8 7 34 34 H 1.08000 * 120.00078 * 359.97438 * 21 20 18 35 35 H 1.07996 * 120.00054 * 180.25180 * 22 21 20 36 36 H 1.08006 * 119.99720 * 179.77095 * 23 22 21 37 37 H 1.08007 * 120.00369 * 179.97438 * 24 23 22 38 38 H 1.07999 * 120.00602 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9877 0.4651 0.5949 7 6 4.0322 2.6417 0.5459 8 7 5.2150 2.9893 -0.2756 9 6 6.3809 3.5770 0.1371 10 1 6.6383 3.5884 1.1859 11 6 7.2322 4.1581 -0.7928 12 7 6.8425 4.3029 -2.0415 13 14 8.9309 4.7347 -0.2716 14 1 9.7058 3.5815 0.2527 15 1 9.6376 5.3142 -1.4421 16 1 8.7998 5.7662 0.7886 17 6 4.8504 2.5563 -1.6446 18 6 4.1059 1.2159 -1.4447 19 1 4.7938 0.3781 -1.5582 20 6 2.9674 1.0962 -2.4249 21 6 2.1167 2.1664 -2.6300 22 6 1.0753 2.0582 -3.5326 23 6 0.8787 0.8768 -4.2228 24 6 1.7261 -0.1951 -4.0136 25 6 2.7706 -0.0854 -3.1148 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 0.5137 0.8900 29 1 3.2487 3.3888 0.4193 30 1 4.3107 2.5561 1.5963 31 1 7.4372 4.7093 -2.6912 32 1 4.1947 3.2900 -2.1133 33 1 5.7463 2.4062 -2.2470 34 1 2.2676 3.0880 -2.0875 35 1 0.4131 2.8956 -3.6959 36 1 0.0629 0.7911 -4.9253 37 1 1.5723 -1.1184 -4.5525 38 1 3.4324 -0.9230 -2.9509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451991074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:10 Heat of formation + Delta-G solvation = -45.293721 kcal Electronic energy + Delta-G solvation = -22066.598890 eV Core-core repulsion = 18874.327944 eV Total energy + Delta-G solvation = -3192.270946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02090 -40.08385 -38.62380 -37.25184 -34.87487 -32.84756 -31.75021 -31.05507 -29.10065 -28.43270 -26.81014 -24.09536 -23.45579 -23.02457 -21.83568 -20.47428 -19.05295 -18.67626 -17.94303 -17.30583 -17.00441 -16.80275 -16.16779 -15.80164 -15.48799 -15.19027 -14.73054 -14.37442 -14.16504 -14.03360 -13.95338 -13.65307 -13.49249 -12.98126 -12.89680 -12.72428 -12.50841 -12.15427 -12.09790 -12.02188 -11.89313 -11.74869 -11.69944 -11.47017 -11.24453 -10.72886 -9.74556 -9.55046 -8.92520 -7.92115 -5.30969 0.45388 0.55984 1.26458 1.47894 1.51368 1.57798 1.79536 2.49366 2.89604 3.28095 3.45143 3.79245 3.88133 3.93709 4.05551 4.12455 4.20033 4.32447 4.35098 4.37182 4.43528 4.52615 4.59651 4.70775 4.72349 4.79038 4.89486 5.11175 5.18052 5.22338 5.34471 5.43168 5.51204 5.61023 5.62409 5.66414 5.80977 6.13031 6.17857 6.83856 6.98021 7.64332 8.43136 9.21482 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023817 B = 0.005924 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.364471 B = 4725.160469 C = 5389.271307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.486 3.514 4 O -0.529 6.529 5 C -0.085 4.085 6 H 0.126 0.874 7 C 0.135 3.865 8 N -0.613 5.613 9 C -0.245 4.245 10 H 0.085 0.915 11 C -0.058 4.058 12 N -0.947 5.947 13 Si 0.982 3.018 14 H -0.272 1.272 15 H -0.295 1.295 16 H -0.276 1.276 17 C 0.178 3.822 18 C -0.051 4.051 19 H 0.101 0.899 20 C -0.097 4.097 21 C -0.117 4.117 22 C -0.134 4.134 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.110 4.110 26 H 0.133 0.867 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.251 0.749 32 H 0.002 0.998 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.450 -12.962 -1.005 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C 0.330 3.670 4 O -0.418 6.418 5 C -0.106 4.106 6 H 0.144 0.856 7 C 0.009 3.991 8 N -0.337 5.337 9 C -0.373 4.373 10 H 0.102 0.898 11 C -0.252 4.252 12 N -0.594 5.594 13 Si 0.810 3.190 14 H -0.198 1.198 15 H -0.221 1.221 16 H -0.202 1.202 17 C 0.052 3.948 18 C -0.071 4.071 19 H 0.119 0.881 20 C -0.097 4.097 21 C -0.135 4.135 22 C -0.152 4.152 23 C -0.138 4.138 24 C -0.138 4.138 25 C -0.128 4.128 26 H 0.151 0.849 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.167 0.833 37 H 0.172 0.828 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.469 -12.532 -1.060 17.710 hybrid contribution 0.718 1.159 0.153 1.372 sum -11.751 -11.373 -0.907 16.378 Atomic orbital electron populations 1.23456 0.75350 1.05379 1.01971 1.86497 1.24503 1.32399 1.83779 1.23335 0.91560 0.81396 0.70691 1.90603 1.67383 1.37286 1.46531 1.22132 0.87166 1.01917 0.99359 0.85630 1.21700 0.89582 0.92316 0.95531 1.45162 1.13131 1.70256 1.05125 1.19362 0.94948 1.29262 0.93761 0.89763 1.25804 1.03361 0.99883 0.96201 1.70100 1.36862 1.48985 1.03403 0.85111 0.78999 0.78257 0.76676 1.19791 1.22083 1.20187 1.21461 0.96084 0.89992 0.87271 1.21240 0.94794 1.00728 0.90345 0.88110 1.19838 0.96097 0.94996 0.98785 1.21079 0.95942 0.97894 0.98578 1.21280 0.97777 0.99239 0.96953 1.21441 1.00240 0.92575 0.99542 1.21445 0.94545 0.99806 0.97994 1.21284 0.98789 0.96515 0.96177 0.84921 0.92936 0.92124 0.95663 0.91558 0.94045 0.97981 0.92779 0.89163 0.85676 0.83292 0.82830 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.87 16 2 O -0.36 -10.15 10.53 -51.51 -0.54 -10.69 16 3 C 0.49 16.80 4.71 71.24 0.34 17.14 16 4 O -0.53 -20.97 13.46 21.97 0.30 -20.67 16 5 C -0.09 -3.08 3.55 -10.64 -0.04 -3.12 16 6 H 0.13 3.87 8.14 -2.38 -0.02 3.85 16 7 C 0.13 5.91 6.71 86.53 0.58 6.50 16 8 N -0.61 -32.14 3.37 -687.71 -2.32 -34.46 16 9 C -0.25 -13.73 10.35 84.03 0.87 -12.86 16 10 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 11 C -0.06 -3.31 5.39 84.86 0.46 -2.86 16 12 N -0.95 -57.34 10.97 21.65 0.24 -57.10 16 13 Si 0.98 45.28 29.56 68.60 2.03 47.31 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 17 C 0.18 8.88 5.27 86.62 0.46 9.34 16 18 C -0.05 -1.95 3.29 -10.55 -0.03 -1.99 16 19 H 0.10 3.51 7.98 -2.39 -0.02 3.49 16 20 C -0.10 -3.35 3.71 -19.86 -0.07 -3.42 16 21 C -0.12 -4.31 6.46 22.27 0.14 -4.17 16 22 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 23 C -0.12 -2.84 10.05 22.27 0.22 -2.62 16 24 C -0.12 -2.73 10.05 22.27 0.22 -2.50 16 25 C -0.11 -3.02 9.68 22.27 0.22 -2.80 16 26 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 28 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 29 H 0.03 1.22 6.81 -2.39 -0.02 1.21 16 30 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.00 0.12 6.13 -2.39 -0.01 0.11 16 33 H 0.05 3.02 6.65 -2.39 -0.02 3.01 16 34 H 0.09 4.00 6.40 -2.91 -0.02 3.98 16 35 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 36 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.14 3.21 8.01 -2.91 -0.02 3.18 16 Total: -1.00 -70.01 312.02 5.53 -64.48 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 1.05 Total: 16.44 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 4.78 Total: -5.30 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -2.08 Total: -91.56 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.25 Total: -31.37 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -70.01 5.53 -64.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451991074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.185 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds