Wall clock time and date at job start Mon Mar 30 2020 01:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 117.00171 * 2 1 4 4 O 1.20828 * 119.99565 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99835 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.78234 * 303.23193 * 5 3 2 7 7 C 1.54317 * 110.72436 * 66.48006 * 5 3 2 8 8 N 1.47019 * 107.27619 * 140.55519 * 7 5 3 9 9 C 1.36943 * 125.64655 * 181.02289 * 8 7 5 10 10 H 1.08004 * 119.99555 * 180.02562 * 9 8 7 11 11 C 1.38811 * 120.00015 * 0.03906 * 9 8 7 12 12 N 1.31618 * 120.00118 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99656 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47589 * 89.99846 * 13 11 9 15 15 H 1.48507 * 109.47160 * 209.99974 * 13 11 9 16 16 H 1.48500 * 109.47083 * 329.99685 * 13 11 9 17 17 C 1.47422 * 108.70109 * 1.05420 * 8 7 5 18 18 C 1.54906 * 104.83380 * 335.87581 * 17 8 7 19 19 H 1.09000 * 110.99906 * 278.89703 * 18 17 8 20 20 C 1.50696 * 111.00624 * 155.08513 * 18 17 8 21 21 C 1.38230 * 120.00346 * 121.44911 * 20 18 17 22 22 C 1.38235 * 120.00326 * 180.02562 * 21 20 18 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38239 * 120.00062 * 0.02871 * 23 22 21 25 25 C 1.38235 * 120.00123 * 359.97128 * 24 23 22 26 26 H 1.09003 * 109.47566 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47621 * 300.00360 * 1 2 3 28 28 H 1.09008 * 109.47494 * 60.00449 * 1 2 3 29 29 H 1.09007 * 109.88295 * 21.12852 * 7 5 3 30 30 H 1.09008 * 109.87950 * 259.97205 * 7 5 3 31 31 H 0.97001 * 119.99860 * 180.02562 * 12 11 9 32 32 H 1.09007 * 110.36519 * 217.03413 * 17 8 7 33 33 H 1.09003 * 110.36195 * 94.71389 * 17 8 7 34 34 H 1.08000 * 120.00356 * 359.97438 * 21 20 18 35 35 H 1.08000 * 120.00616 * 179.70664 * 22 21 20 36 36 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 37 37 H 1.08005 * 120.00087 * 180.02562 * 24 23 22 38 38 H 1.07999 * 120.00181 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9813 0.7374 0.8533 7 6 4.1422 0.7278 -1.3225 8 7 5.2670 1.5957 -1.7008 9 6 6.0353 1.4612 -2.8264 10 1 6.8428 2.1533 -3.0148 11 6 5.7762 0.4356 -3.7252 12 7 4.7916 -0.4073 -3.4959 13 14 6.8247 0.2518 -5.2602 14 1 7.9811 -0.6324 -4.9669 15 1 6.0090 -0.3446 -6.3484 16 1 7.3176 1.5865 -5.6857 17 6 5.4312 2.6342 -0.6674 18 6 4.0385 2.7527 0.0004 19 1 3.3717 3.3765 -0.5948 20 6 4.1570 3.2822 1.4064 21 6 3.5034 4.4465 1.7638 22 6 3.6124 4.9325 3.0534 23 6 4.3747 4.2536 3.9856 24 6 5.0284 3.0892 3.6281 25 6 4.9193 2.6033 2.3386 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 3.3771 0.7531 -2.0984 30 1 4.4942 -0.2939 -1.1793 31 1 4.6108 -1.1242 -4.1238 32 1 5.7149 3.5824 -1.1242 33 1 6.1779 2.3262 0.0645 34 1 2.9082 4.9772 1.0355 35 1 3.1057 5.8448 3.3314 36 1 4.4603 4.6334 4.9930 37 1 5.6236 2.5586 4.3566 38 1 5.4297 1.6933 2.0594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451991075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:13 Heat of formation + Delta-G solvation = -51.066849 kcal Electronic energy + Delta-G solvation = -21498.066529 eV Core-core repulsion = 18305.545241 eV Total energy + Delta-G solvation = -3192.521288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.83155 -40.34327 -38.66132 -37.42950 -34.91953 -32.57094 -31.76330 -31.58632 -29.01095 -28.34112 -26.71791 -24.26293 -23.47586 -22.86772 -21.80512 -20.69299 -18.99252 -18.72152 -17.92431 -17.56459 -17.26882 -16.69823 -16.09213 -15.79456 -15.38639 -15.29033 -14.39238 -14.34545 -14.30258 -14.11114 -13.94836 -13.71653 -13.63589 -13.01617 -12.97292 -12.72562 -12.53765 -12.38201 -12.08880 -12.06499 -11.89971 -11.80059 -11.64200 -11.58236 -11.37234 -10.73860 -9.75168 -9.55072 -8.95525 -7.87095 -5.23845 0.48091 0.56937 1.11396 1.48291 1.50054 1.58655 1.76298 2.49468 2.89280 3.32905 3.43023 3.58699 3.80373 3.95504 4.08700 4.17972 4.21631 4.23611 4.30197 4.31704 4.36915 4.48543 4.52592 4.66270 4.71155 4.80716 4.90739 5.15062 5.20254 5.26317 5.31295 5.38598 5.42014 5.62823 5.64590 5.67444 5.82447 6.12822 6.18715 6.69365 7.05036 7.70792 8.35062 9.24092 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.006118 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.125895 B = 4575.800634 C = 5820.476057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.482 3.518 4 O -0.528 6.528 5 C -0.096 4.096 6 H 0.124 0.876 7 C 0.211 3.789 8 N -0.625 5.625 9 C -0.244 4.244 10 H 0.088 0.912 11 C -0.063 4.063 12 N -0.952 5.952 13 Si 0.981 3.019 14 H -0.283 1.283 15 H -0.296 1.296 16 H -0.269 1.269 17 C 0.144 3.856 18 C -0.034 4.034 19 H 0.076 0.924 20 C -0.078 4.078 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.127 4.127 26 H 0.132 0.868 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.012 0.988 30 H 0.030 0.970 31 H 0.249 0.751 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.116 0.884 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 5.317 14.601 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.326 3.674 4 O -0.418 6.418 5 C -0.115 4.115 6 H 0.142 0.858 7 C 0.086 3.914 8 N -0.351 5.351 9 C -0.372 4.372 10 H 0.106 0.894 11 C -0.256 4.256 12 N -0.600 5.600 13 Si 0.809 3.191 14 H -0.210 1.210 15 H -0.222 1.222 16 H -0.194 1.194 17 C 0.019 3.981 18 C -0.053 4.053 19 H 0.094 0.906 20 C -0.079 4.079 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.145 4.145 26 H 0.150 0.850 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.134 0.866 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.443 5.476 14.407 16.040 hybrid contribution 0.025 -0.382 -1.341 1.395 sum -4.418 5.094 13.065 14.703 Atomic orbital electron populations 1.23560 0.74785 1.05728 1.02448 1.86547 1.25191 1.32794 1.83527 1.23520 0.91764 0.81280 0.70791 1.90571 1.67427 1.36925 1.46829 1.22449 0.87279 0.99259 1.02559 0.85797 1.20650 0.89022 0.92853 0.88898 1.44708 1.35593 1.31810 1.23000 1.19479 1.09701 1.10911 0.97145 0.89425 1.25668 1.00041 0.97763 1.02150 1.70128 1.32850 1.19034 1.38013 0.85041 0.77531 0.77978 0.78539 1.20978 1.22214 1.19396 1.21809 0.93894 0.91999 0.90410 1.21101 0.97396 0.92808 0.94002 0.90553 1.19606 0.98366 0.96116 0.93795 1.21182 0.99371 0.95925 0.97581 1.21405 0.99328 1.00708 0.92674 1.21494 0.96956 0.95348 1.00495 1.21421 0.99779 0.96873 0.95755 1.21183 0.98990 1.00370 0.93944 0.84998 0.91153 0.92617 0.96929 0.95141 0.94157 0.93389 0.93998 0.86594 0.83921 0.83274 0.83672 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.91 16 2 O -0.36 -13.02 10.56 -51.41 -0.54 -13.57 16 3 C 0.48 18.93 7.12 71.23 0.51 19.44 16 4 O -0.53 -21.75 15.45 21.96 0.34 -21.41 16 5 C -0.10 -3.79 2.85 -10.35 -0.03 -3.82 16 6 H 0.12 4.38 6.76 -2.39 -0.02 4.36 16 7 C 0.21 10.60 4.96 86.73 0.43 11.03 16 8 N -0.62 -32.30 3.39 -691.98 -2.35 -34.65 16 9 C -0.24 -13.62 10.28 84.03 0.86 -12.75 16 10 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 11 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 12 N -0.95 -57.04 10.31 21.65 0.22 -56.82 16 13 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 C 0.14 5.98 6.65 86.85 0.58 6.56 16 18 C -0.03 -1.27 2.35 -10.15 -0.02 -1.29 16 19 H 0.08 3.15 7.23 -2.39 -0.02 3.13 16 20 C -0.08 -2.47 5.00 -19.87 -0.10 -2.57 16 21 C -0.12 -3.50 9.69 22.27 0.22 -3.29 16 22 C -0.12 -2.79 10.05 22.27 0.22 -2.56 16 23 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 24 C -0.12 -2.66 10.05 22.27 0.22 -2.43 16 25 C -0.13 -3.51 8.29 22.27 0.18 -3.33 16 26 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.07 1.64 8.13 -2.39 -0.02 1.62 16 28 H 0.05 1.50 8.13 -2.38 -0.02 1.48 16 29 H 0.01 0.72 7.05 -2.38 -0.02 0.70 16 30 H 0.03 1.67 7.51 -2.38 -0.02 1.65 16 31 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.04 1.65 7.07 -2.39 -0.02 1.63 16 34 H 0.12 3.33 7.99 -2.91 -0.02 3.30 16 35 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.12 3.35 7.01 -2.91 -0.02 3.33 16 Total: -1.00 -68.80 317.45 5.71 -63.09 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.05 Total: 14.29 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 4.96 Total: 1.49 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -2.13 Total: -91.46 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -0.20 Total: -34.98 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -68.80 5.71 -63.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451991075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.025 kcal (2) G-P(sol) polarization free energy of solvation -68.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds