Wall clock time and date at job start Mon Mar 30 2020 01:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99530 * 2 1 4 4 O 1.20826 * 120.00217 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00128 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.30355 * 37.49793 * 5 3 2 7 7 C 1.54390 * 110.43284 * 159.73372 * 5 3 2 8 8 N 1.48153 * 104.61486 * 142.78266 * 7 5 3 9 9 C 1.36936 * 127.83485 * 140.41583 * 8 7 5 10 10 H 1.08005 * 119.99448 * 197.86013 * 9 8 7 11 11 C 1.38809 * 120.00466 * 17.85821 * 9 8 7 12 12 N 1.31621 * 119.99601 * 9.77935 * 11 9 8 13 13 Si 1.86798 * 120.00271 * 189.78199 * 11 9 8 14 14 H 1.48496 * 109.47277 * 59.99946 * 13 11 9 15 15 H 1.48499 * 109.47297 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46900 * 299.99983 * 13 11 9 17 17 C 1.48145 * 104.32335 * 320.41268 * 8 7 5 18 18 C 1.54286 * 110.34201 * 275.32404 * 5 3 2 19 19 H 1.09001 * 110.34175 * 122.15048 * 18 5 3 20 20 C 1.50701 * 110.43323 * 359.93973 * 18 5 3 21 21 C 1.38240 * 119.99623 * 292.44780 * 20 18 5 22 22 C 1.38240 * 119.99479 * 179.76159 * 21 20 18 23 23 C 1.38230 * 120.00209 * 0.51260 * 22 21 20 24 24 C 1.38236 * 120.00033 * 359.73942 * 23 22 21 25 25 C 1.38235 * 120.00235 * 112.71773 * 20 18 5 26 26 H 1.08997 * 109.47361 * 299.99712 * 1 2 3 27 27 H 1.08999 * 109.47662 * 60.00347 * 1 2 3 28 28 H 1.09008 * 109.46773 * 180.02562 * 1 2 3 29 29 H 1.08998 * 110.40779 * 261.56211 * 7 5 3 30 30 H 1.08996 * 110.40570 * 23.88574 * 7 5 3 31 31 H 0.97001 * 119.99737 * 179.97438 * 12 11 9 32 32 H 1.09000 * 110.41093 * 280.80273 * 17 8 7 33 33 H 1.09006 * 110.40415 * 158.37189 * 17 8 7 34 34 H 1.07995 * 120.00363 * 359.97438 * 21 20 18 35 35 H 1.07996 * 119.99562 * 180.22427 * 22 21 20 36 36 H 1.07998 * 120.00175 * 179.72721 * 23 22 21 37 37 H 1.08000 * 120.00185 * 179.97438 * 24 23 22 38 38 H 1.07995 * 119.99683 * 0.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2751 -0.0006 6 1 3.9862 0.4851 -0.6232 7 6 4.0331 2.6588 -0.5016 8 7 5.2187 2.9763 0.3281 9 6 6.3844 3.5761 -0.0674 10 1 7.2691 3.4942 0.5467 11 6 6.4291 4.2894 -1.2574 12 7 5.3160 4.5537 -1.9083 13 14 8.0687 4.8740 -1.9350 14 1 8.9467 3.7029 -2.1856 15 1 7.8456 5.6072 -3.2069 16 1 8.7172 5.7773 -0.9508 17 6 4.8569 2.4977 1.6826 18 6 4.1094 1.1689 1.4396 19 1 4.7962 0.3267 1.5243 20 6 2.9748 1.0191 2.4201 21 6 2.0979 2.0674 2.6277 22 6 1.0543 1.9282 3.5235 23 6 0.8938 0.7447 4.2195 24 6 1.7739 -0.3017 4.0157 25 6 2.8144 -0.1645 3.1160 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 4.3088 2.6084 -1.5549 30 1 3.2504 3.4020 -0.3494 31 1 5.3472 5.0524 -2.7397 32 1 4.2037 3.2162 2.1778 33 1 5.7542 2.3258 2.2772 34 1 2.2261 2.9937 2.0876 35 1 0.3670 2.7459 3.6831 36 1 0.0811 0.6376 4.9226 37 1 1.6488 -1.2262 4.5597 38 1 3.5023 -0.9817 2.9573 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451991076.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:17 Heat of formation + Delta-G solvation = -28.462854 kcal Electronic energy + Delta-G solvation = -22057.039019 eV Core-core repulsion = 18865.497914 eV Total energy + Delta-G solvation = -3191.541105 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59126 -38.84572 -37.11670 -35.76547 -33.11567 -31.00360 -30.63703 -29.72868 -27.49467 -27.09392 -24.95893 -22.76054 -22.20047 -21.53242 -20.20111 -19.07955 -17.39419 -16.93858 -16.62729 -15.88896 -15.76129 -15.00167 -14.70999 -14.62619 -13.99712 -13.69064 -13.20844 -13.06732 -12.90081 -12.52632 -12.28607 -12.23647 -12.10967 -11.78089 -11.12683 -10.91723 -10.87498 -10.81592 -10.68566 -10.41185 -10.29019 -10.11541 -9.97535 -9.78242 -9.70987 -8.67378 -8.65090 -8.41846 -6.87712 -5.81966 -3.18052 1.55136 1.64309 2.76010 3.15322 3.38869 3.43247 3.44500 3.99827 4.44931 4.90181 5.05003 5.16595 5.26097 5.29698 5.33786 5.37108 5.41815 5.47758 5.56748 5.65920 5.69712 5.76038 5.84263 5.96944 6.06962 6.22882 6.26798 6.35395 6.59568 6.65973 6.75154 6.79076 6.82909 6.99271 7.23777 7.27580 7.55047 7.67863 8.14692 8.29437 9.06651 9.70127 10.46907 11.32371 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.005669 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.189136 B = 4937.763497 C = 5460.319966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.476 3.524 4 O -0.501 6.501 5 C -0.103 4.103 6 H 0.098 0.902 7 C 0.171 3.829 8 N -0.590 5.590 9 C -0.233 4.233 10 H 0.078 0.922 11 C -0.001 4.001 12 N -0.911 5.911 13 Si 0.913 3.087 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.132 3.868 18 C -0.052 4.052 19 H 0.087 0.913 20 C -0.079 4.079 21 C -0.100 4.100 22 C -0.123 4.123 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.107 4.107 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.256 0.744 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.596 -10.796 8.157 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.387 6.387 5 C -0.124 4.124 6 H 0.116 0.884 7 C 0.044 3.956 8 N -0.313 5.313 9 C -0.361 4.361 10 H 0.095 0.905 11 C -0.199 4.199 12 N -0.556 5.556 13 Si 0.743 3.257 14 H -0.210 1.210 15 H -0.215 1.215 16 H -0.209 1.209 17 C 0.005 3.995 18 C -0.072 4.072 19 H 0.105 0.895 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.125 4.125 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.699 -10.309 7.948 15.657 hybrid contribution 0.441 0.310 -0.392 0.666 sum -8.258 -9.999 7.556 15.009 Atomic orbital electron populations 1.23107 0.77758 1.02726 1.02097 1.86540 1.22351 1.34388 1.84519 1.23704 0.92049 0.80998 0.71307 1.90612 1.66899 1.36178 1.45043 1.22547 0.85902 1.05349 0.98595 0.88413 1.21581 0.89339 0.87294 0.97340 1.44872 1.14943 1.69238 1.02282 1.18925 0.86338 1.25537 1.05278 0.90472 1.24967 0.97223 0.98471 0.99286 1.69908 1.24952 1.42960 1.17798 0.86200 0.82843 0.78435 0.78263 1.20972 1.21539 1.20907 1.21835 0.96571 0.91331 0.89743 1.21210 0.94148 1.01561 0.90320 0.89454 1.19948 0.96552 0.93961 0.97530 1.21349 0.94001 0.99250 0.97179 1.21100 0.98244 0.97639 0.97101 1.21062 0.99532 0.93930 1.00181 1.21020 0.95774 0.98662 0.99119 1.21013 0.98128 0.96950 0.96408 0.92358 0.92362 0.88960 0.89591 0.93337 0.93356 0.95027 0.92859 0.85044 0.86503 0.86729 0.86573 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.55 101.05 1.07 1.55 16 2 O -0.36 -5.90 10.47 -39.26 -0.41 -6.31 16 3 C 0.48 8.94 4.64 36.00 0.17 9.11 16 4 O -0.50 -10.48 13.41 -18.75 -0.25 -10.73 16 5 C -0.10 -1.99 3.55 -90.37 -0.32 -2.31 16 6 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 7 C 0.17 4.13 5.32 -2.40 -0.01 4.12 16 8 N -0.59 -14.88 3.37 -168.85 -0.57 -15.45 16 9 C -0.23 -6.36 10.34 -15.06 -0.16 -6.52 16 10 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 11 C 0.00 -0.04 5.38 -17.43 -0.09 -0.13 16 12 N -0.91 -26.67 11.03 55.49 0.61 -26.06 16 13 Si 0.91 21.64 29.56 -169.99 -5.03 16.62 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C 0.13 2.74 6.65 -2.41 -0.02 2.72 16 18 C -0.05 -0.93 3.28 -90.37 -0.30 -1.22 16 19 H 0.09 1.40 7.96 -51.93 -0.41 0.99 16 20 C -0.08 -1.29 3.73 -104.62 -0.39 -1.68 16 21 C -0.10 -1.68 6.40 -39.58 -0.25 -1.94 16 22 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 23 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16 24 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 25 C -0.11 -1.49 9.68 -39.58 -0.38 -1.87 16 26 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.09 2.30 6.71 -51.93 -0.35 1.95 16 30 H 0.05 1.29 6.81 -51.93 -0.35 0.94 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.03 0.68 6.27 -51.93 -0.33 0.35 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.13 2.54 6.40 -52.49 -0.34 2.21 16 35 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.12 1.44 7.99 -52.49 -0.42 1.02 16 LS Contribution 311.97 15.07 4.70 4.70 Total: -1.00 -30.95 311.97 -7.95 -38.90 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.12 Total: 2.67 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -1.88 Total: -4.34 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.04 Total: -41.51 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.66 Total: -17.04 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.95 -7.95 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451991076.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.434 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds