Wall clock time and date at job start Mon Mar 30 2020 01:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99530 * 2 1 4 4 O 1.20826 * 120.00217 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00128 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.30355 * 37.49793 * 5 3 2 7 7 C 1.54390 * 110.43284 * 159.73372 * 5 3 2 8 8 N 1.48153 * 104.61486 * 142.78266 * 7 5 3 9 9 C 1.36936 * 127.83485 * 140.41583 * 8 7 5 10 10 H 1.08005 * 119.99448 * 197.86013 * 9 8 7 11 11 C 1.38809 * 120.00466 * 17.85821 * 9 8 7 12 12 N 1.31621 * 119.99601 * 9.77935 * 11 9 8 13 13 Si 1.86798 * 120.00271 * 189.78199 * 11 9 8 14 14 H 1.48496 * 109.47277 * 59.99946 * 13 11 9 15 15 H 1.48499 * 109.47297 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46900 * 299.99983 * 13 11 9 17 17 C 1.48145 * 104.32335 * 320.41268 * 8 7 5 18 18 C 1.54286 * 110.34201 * 275.32404 * 5 3 2 19 19 H 1.09001 * 110.34175 * 122.15048 * 18 5 3 20 20 C 1.50701 * 110.43323 * 359.93973 * 18 5 3 21 21 C 1.38240 * 119.99623 * 292.44780 * 20 18 5 22 22 C 1.38240 * 119.99479 * 179.76159 * 21 20 18 23 23 C 1.38230 * 120.00209 * 0.51260 * 22 21 20 24 24 C 1.38236 * 120.00033 * 359.73942 * 23 22 21 25 25 C 1.38235 * 120.00235 * 112.71773 * 20 18 5 26 26 H 1.08997 * 109.47361 * 299.99712 * 1 2 3 27 27 H 1.08999 * 109.47662 * 60.00347 * 1 2 3 28 28 H 1.09008 * 109.46773 * 180.02562 * 1 2 3 29 29 H 1.08998 * 110.40779 * 261.56211 * 7 5 3 30 30 H 1.08996 * 110.40570 * 23.88574 * 7 5 3 31 31 H 0.97001 * 119.99737 * 179.97438 * 12 11 9 32 32 H 1.09000 * 110.41093 * 280.80273 * 17 8 7 33 33 H 1.09006 * 110.40415 * 158.37189 * 17 8 7 34 34 H 1.07995 * 120.00363 * 359.97438 * 21 20 18 35 35 H 1.07996 * 119.99562 * 180.22427 * 22 21 20 36 36 H 1.07998 * 120.00175 * 179.72721 * 23 22 21 37 37 H 1.08000 * 120.00185 * 179.97438 * 24 23 22 38 38 H 1.07995 * 119.99683 * 0.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2751 -0.0006 6 1 3.9862 0.4851 -0.6232 7 6 4.0331 2.6588 -0.5016 8 7 5.2187 2.9763 0.3281 9 6 6.3844 3.5761 -0.0674 10 1 7.2691 3.4942 0.5467 11 6 6.4291 4.2894 -1.2574 12 7 5.3160 4.5537 -1.9083 13 14 8.0687 4.8740 -1.9350 14 1 8.9467 3.7029 -2.1856 15 1 7.8456 5.6072 -3.2069 16 1 8.7172 5.7773 -0.9508 17 6 4.8569 2.4977 1.6826 18 6 4.1094 1.1689 1.4396 19 1 4.7962 0.3267 1.5243 20 6 2.9748 1.0191 2.4201 21 6 2.0979 2.0674 2.6277 22 6 1.0543 1.9282 3.5235 23 6 0.8938 0.7447 4.2195 24 6 1.7739 -0.3017 4.0157 25 6 2.8144 -0.1645 3.1160 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 4.3088 2.6084 -1.5549 30 1 3.2504 3.4020 -0.3494 31 1 5.3472 5.0524 -2.7397 32 1 4.2037 3.2162 2.1778 33 1 5.7542 2.3258 2.2772 34 1 2.2261 2.9937 2.0876 35 1 0.3670 2.7459 3.6831 36 1 0.0811 0.6376 4.9226 37 1 1.6488 -1.2262 4.5597 38 1 3.5023 -0.9817 2.9573 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451991076.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:16 Heat of formation + Delta-G solvation = -45.832365 kcal Electronic energy + Delta-G solvation = -22057.792218 eV Core-core repulsion = 18865.497914 eV Total energy + Delta-G solvation = -3192.294304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02769 -40.08656 -38.62863 -37.24939 -34.93117 -32.63010 -31.73481 -31.35636 -28.92986 -28.49196 -26.81149 -24.10989 -23.48651 -22.99651 -21.83667 -20.52242 -18.99102 -18.65972 -17.95724 -17.32244 -17.03822 -16.69210 -16.25461 -15.82289 -15.52457 -15.19048 -14.68376 -14.37205 -14.17714 -14.01661 -13.88886 -13.72111 -13.48345 -12.96099 -12.94265 -12.72502 -12.37995 -12.30802 -12.09691 -12.03419 -11.81281 -11.78071 -11.70898 -11.51371 -11.21545 -10.72816 -9.74410 -9.57439 -8.92322 -7.92975 -5.32005 0.44880 0.55700 1.28352 1.47682 1.51148 1.58000 1.80111 2.48969 2.89499 3.27450 3.47663 3.78643 3.84461 3.94714 4.06139 4.16937 4.20252 4.32808 4.34178 4.35551 4.46339 4.51839 4.56818 4.69510 4.70249 4.80243 4.93685 5.13194 5.19540 5.24627 5.29348 5.38568 5.50515 5.60053 5.63073 5.67396 5.79615 6.11479 6.17640 6.85082 6.96469 7.64095 8.43129 9.21165 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.005669 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.189136 B = 4937.763497 C = 5460.319966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.486 3.514 4 O -0.531 6.531 5 C -0.098 4.098 6 H 0.115 0.885 7 C 0.183 3.817 8 N -0.612 5.612 9 C -0.244 4.244 10 H 0.087 0.913 11 C -0.060 4.060 12 N -0.949 5.949 13 Si 0.983 3.017 14 H -0.271 1.271 15 H -0.296 1.296 16 H -0.275 1.275 17 C 0.130 3.870 18 C -0.038 4.038 19 H 0.113 0.887 20 C -0.096 4.096 21 C -0.121 4.121 22 C -0.134 4.134 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.105 4.105 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.134 0.866 29 H 0.052 0.948 30 H 0.009 0.991 31 H 0.250 0.750 32 H 0.017 0.983 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.774 -13.870 10.093 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C 0.330 3.670 4 O -0.420 6.420 5 C -0.119 4.119 6 H 0.133 0.867 7 C 0.057 3.943 8 N -0.336 5.336 9 C -0.372 4.372 10 H 0.105 0.895 11 C -0.254 4.254 12 N -0.596 5.596 13 Si 0.810 3.190 14 H -0.197 1.197 15 H -0.222 1.222 16 H -0.200 1.200 17 C 0.005 3.995 18 C -0.057 4.057 19 H 0.132 0.868 20 C -0.097 4.097 21 C -0.139 4.139 22 C -0.152 4.152 23 C -0.137 4.137 24 C -0.137 4.137 25 C -0.123 4.123 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.153 0.847 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.141 0.859 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.882 -13.423 9.920 18.907 hybrid contribution 0.364 1.241 -0.887 1.568 sum -8.518 -12.182 9.032 17.394 Atomic orbital electron populations 1.23452 0.75477 1.05383 1.01873 1.86496 1.24428 1.32404 1.83879 1.23394 0.91670 0.81335 0.70629 1.90610 1.67418 1.37425 1.46523 1.22305 0.87050 1.02366 1.00145 0.86726 1.21148 0.88174 0.89382 0.95641 1.45144 1.14596 1.69509 1.04368 1.19380 0.87422 1.25057 1.05369 0.89523 1.25853 1.00643 0.99132 0.99799 1.70128 1.27251 1.44218 1.18015 0.85099 0.78691 0.78109 0.77093 1.19701 1.22231 1.20024 1.21954 0.97161 0.92649 0.87765 1.21066 0.94946 1.00214 0.89511 0.86849 1.19804 0.96264 0.95136 0.98467 1.21114 0.96014 0.98262 0.98527 1.21261 0.97724 0.99168 0.97028 1.21443 1.00085 0.92713 0.99458 1.21460 0.94366 0.99813 0.98068 1.21289 0.98943 0.96264 0.95796 0.92714 0.92617 0.84745 0.92935 0.97278 0.94071 0.96476 0.91645 0.89221 0.85876 0.83436 0.82833 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.55 113.37 1.20 1.94 16 2 O -0.36 -11.03 10.47 -51.42 -0.54 -11.57 16 3 C 0.49 18.45 4.64 71.24 0.33 18.78 16 4 O -0.53 -23.32 13.41 21.96 0.29 -23.03 16 5 C -0.10 -3.86 3.55 -10.63 -0.04 -3.89 16 6 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 7 C 0.18 9.41 5.32 86.53 0.46 9.87 16 8 N -0.61 -32.11 3.37 -688.13 -2.32 -34.43 16 9 C -0.24 -13.67 10.34 84.03 0.87 -12.80 16 10 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 11 C -0.06 -3.44 5.38 84.86 0.46 -2.99 16 12 N -0.95 -58.44 11.03 21.65 0.24 -58.21 16 13 Si 0.98 45.45 29.56 68.60 2.03 47.48 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 C 0.13 5.54 6.65 86.53 0.58 6.11 16 18 C -0.04 -1.31 3.28 -10.63 -0.03 -1.35 16 19 H 0.11 3.35 7.96 -2.39 -0.02 3.33 16 20 C -0.10 -3.00 3.73 -19.86 -0.07 -3.07 16 21 C -0.12 -4.14 6.40 22.27 0.14 -3.99 16 22 C -0.13 -3.70 10.05 22.27 0.22 -3.48 16 23 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 24 C -0.12 -2.37 10.05 22.27 0.22 -2.15 16 25 C -0.11 -2.52 9.68 22.27 0.22 -2.31 16 26 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 27 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 28 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.05 3.00 6.71 -2.39 -0.02 2.99 16 30 H 0.01 0.54 6.81 -2.39 -0.02 0.52 16 31 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.02 0.79 6.27 -2.39 -0.01 0.77 16 33 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 34 H 0.09 3.78 6.40 -2.91 -0.02 3.76 16 35 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.14 2.74 7.99 -2.91 -0.02 2.72 16 Total: -1.00 -71.47 311.97 5.52 -65.95 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.05 Total: 15.45 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 4.77 Total: -1.63 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -2.08 Total: -92.64 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.24 Total: -34.60 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -71.47 5.52 -65.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451991076.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.113 kcal (2) G-P(sol) polarization free energy of solvation -71.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds