Wall clock time and date at job start Mon Mar 30 2020 01:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00098 * 2 1 4 4 C 1.52994 * 109.46883 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47430 * 66.37964 * 4 3 2 6 6 C 1.36931 * 119.99824 * 277.21771 * 5 4 3 7 7 H 1.07999 * 120.00337 * 145.13422 * 6 5 4 8 8 C 1.38813 * 120.00146 * 325.13491 * 6 5 4 9 9 N 1.31622 * 120.00474 * 155.52767 * 8 6 5 10 10 Si 1.86798 * 119.99781 * 335.52535 * 8 6 5 11 11 H 1.48496 * 109.47332 * 95.28140 * 10 8 6 12 12 H 1.48503 * 109.47350 * 215.27955 * 10 8 6 13 13 H 1.48498 * 109.47262 * 335.27884 * 10 8 6 14 14 C 1.46502 * 120.00032 * 97.21022 * 5 4 3 15 15 C 1.50696 * 109.47174 * 269.43359 * 14 5 4 16 16 C 1.33993 * 126.90846 * 263.04783 * 15 14 5 17 17 O 1.34447 * 110.15530 * 179.97438 * 16 15 14 18 18 C 1.34810 * 110.89124 * 0.02562 * 17 16 15 19 19 C 1.38941 * 133.50000 * 180.02562 * 18 17 16 20 20 C 1.37843 * 119.81969 * 179.97438 * 19 18 17 21 21 C 1.38747 * 120.68358 * 0.02562 * 20 19 18 22 22 C 1.36731 * 120.42090 * 359.97438 * 21 20 19 23 23 C 1.39410 * 119.71239 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47283 * 59.99888 * 1 2 3 25 25 H 1.08998 * 109.47645 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47073 * 300.00178 * 1 2 3 27 27 H 1.09003 * 109.46884 * 60.00336 * 3 2 1 28 28 H 1.08997 * 109.46859 * 300.00416 * 3 2 1 29 29 H 1.08998 * 109.47361 * 306.37573 * 4 3 2 30 30 H 1.09008 * 109.46850 * 186.37657 * 4 3 2 31 31 H 0.96993 * 120.00117 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.46758 * 149.43502 * 14 5 4 33 33 H 1.09001 * 109.46940 * 29.43837 * 14 5 4 34 34 H 1.08006 * 124.92367 * 359.95730 * 16 15 14 35 35 H 1.08003 * 120.08736 * 0.23344 * 19 18 17 36 36 H 1.07999 * 119.65784 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.78697 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.14740 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9781 0.5945 -1.2664 6 6 3.9583 -0.7646 -1.4322 7 1 3.7253 -1.1875 -2.3982 8 6 4.2378 -1.5989 -0.3585 9 7 3.7742 -2.8307 -0.3440 10 14 5.2719 -0.9734 1.0658 11 1 4.3801 -0.4798 2.1458 12 1 6.1161 -2.0782 1.5874 13 1 6.1417 0.1350 0.5968 14 6 4.4417 1.4586 -2.3549 15 6 3.2761 1.8238 -3.2375 16 6 2.9193 1.2315 -4.3853 17 8 1.8272 1.8279 -4.8943 18 6 1.4188 2.8397 -4.1025 19 6 0.3690 3.7470 -4.1749 20 6 0.2088 4.6905 -3.1828 21 6 1.0865 4.7454 -2.1096 22 6 2.1260 3.8618 -2.0194 23 6 2.3040 2.9005 -3.0133 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8498 0.5481 0.8265 30 1 3.9784 2.1740 0.1135 31 1 3.9698 -3.4137 0.4060 32 1 5.1918 0.9304 -2.9436 33 1 4.8796 2.3653 -1.9376 34 1 3.4345 0.3962 -4.8363 35 1 -0.3220 3.7105 -5.0041 36 1 -0.6083 5.3942 -3.2415 37 1 0.9476 5.4909 -1.3405 38 1 2.8062 3.9082 -1.1819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453597679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:40 Heat of formation + Delta-G solvation = 23.184349 kcal Electronic energy + Delta-G solvation = -22125.236305 eV Core-core repulsion = 18935.934791 eV Total energy + Delta-G solvation = -3189.301514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.04018 -37.68152 -37.26524 -35.62056 -32.77816 -31.30090 -30.38807 -29.64052 -28.35697 -25.94419 -25.56849 -23.05039 -22.84545 -21.98359 -21.04630 -19.48316 -17.07135 -16.73571 -16.45288 -16.02553 -15.63916 -15.41944 -15.20542 -14.62070 -14.10919 -13.95430 -13.67775 -13.54421 -13.01520 -12.83327 -12.36359 -12.15294 -12.04844 -11.99140 -11.57451 -11.37278 -10.98376 -10.82002 -10.63412 -10.56893 -10.20490 -9.73354 -9.61938 -9.43702 -8.69097 -8.40968 -8.31841 -7.75388 -6.82892 -5.84275 -3.21891 1.18568 1.58558 2.82148 3.19118 3.40849 3.53751 3.56777 3.93919 4.65814 4.71893 4.81555 4.93807 5.06851 5.09098 5.32931 5.43040 5.55487 5.60829 5.77155 5.82598 5.85580 5.92684 6.02919 6.09812 6.13329 6.18419 6.23960 6.30618 6.36801 6.49356 6.53465 6.57450 6.69747 6.79681 6.85954 6.93778 7.55598 8.06066 8.21000 8.48397 9.05404 9.86165 10.19687 11.31938 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021217 B = 0.006950 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.355655 B = 4027.529086 C = 4323.677352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.341 6.341 3 C 0.040 3.960 4 C 0.136 3.864 5 N -0.588 5.588 6 C -0.257 4.257 7 H 0.074 0.926 8 C 0.052 3.948 9 N -0.891 5.891 10 Si 0.871 3.129 11 H -0.287 1.287 12 H -0.305 1.305 13 H -0.273 1.273 14 C 0.209 3.791 15 C -0.168 4.168 16 C 0.005 3.995 17 O -0.201 6.201 18 C 0.045 3.955 19 C -0.111 4.111 20 C -0.105 4.105 21 C -0.146 4.146 22 C -0.067 4.067 23 C -0.111 4.111 24 H 0.026 0.974 25 H 0.077 0.923 26 H 0.023 0.977 27 H 0.020 0.980 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.259 0.741 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.205 0.795 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.901 14.201 -4.157 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.258 6.258 3 C -0.039 4.039 4 C 0.010 3.990 5 N -0.309 5.309 6 C -0.385 4.385 7 H 0.092 0.908 8 C -0.149 4.149 9 N -0.532 5.532 10 Si 0.702 3.298 11 H -0.215 1.215 12 H -0.233 1.233 13 H -0.198 1.198 14 C 0.082 3.918 15 C -0.172 4.172 16 C -0.061 4.061 17 O -0.103 6.103 18 C -0.002 4.002 19 C -0.130 4.130 20 C -0.123 4.123 21 C -0.164 4.164 22 C -0.085 4.085 23 C -0.112 4.112 24 H 0.045 0.955 25 H 0.096 0.904 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.221 0.779 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.887 13.761 -4.309 15.226 hybrid contribution 0.097 0.394 1.082 1.156 sum -4.790 14.155 -3.227 15.288 Atomic orbital electron populations 1.22594 0.84149 1.01643 0.97959 1.88331 1.16591 1.26162 1.94739 1.23393 0.97102 0.85481 0.97922 1.21319 0.90764 0.96380 0.90529 1.44027 1.73252 1.03348 1.10285 1.18483 1.42735 0.78910 0.98398 0.90843 1.25161 0.97773 0.94767 0.97159 1.69908 1.43718 1.08008 1.31570 0.87048 0.81511 0.77681 0.83560 1.21541 1.23320 1.19830 1.19289 0.89811 0.93815 0.88865 1.22451 1.01669 0.95970 0.97124 1.23784 0.87571 0.98675 0.96026 1.83965 1.40535 1.39558 1.46230 1.19654 0.97649 0.91420 0.91512 1.19843 0.96756 0.95258 1.01097 1.20785 0.99537 0.98101 0.93839 1.20677 0.96227 1.00379 0.99097 1.20289 0.97662 0.93330 0.97200 1.19932 0.96976 0.98098 0.96178 0.95533 0.90440 0.95882 0.96176 0.93231 0.92712 0.92832 0.93085 0.91121 0.93342 0.77855 0.85694 0.85448 0.85937 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 101.05 1.11 1.76 16 2 O -0.34 -8.20 9.89 -35.23 -0.35 -8.55 16 3 C 0.04 0.84 6.27 37.15 0.23 1.07 16 4 C 0.14 2.97 5.26 -4.04 -0.02 2.95 16 5 N -0.59 -13.63 2.12 -174.61 -0.37 -14.00 16 6 C -0.26 -7.06 9.11 -15.06 -0.14 -7.20 16 7 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 8 C 0.05 1.50 5.31 -17.43 -0.09 1.41 16 9 N -0.89 -27.41 13.97 55.49 0.78 -26.63 16 10 Si 0.87 22.38 25.07 -169.99 -4.26 18.12 16 11 H -0.29 -7.34 6.66 56.52 0.38 -6.96 16 12 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 13 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.21 3.99 6.25 -5.19 -0.03 3.96 16 15 C -0.17 -3.07 5.87 -102.66 -0.60 -3.67 16 16 C 0.00 0.08 11.89 29.24 0.35 0.43 16 17 O -0.20 -3.53 10.58 3.91 0.04 -3.48 16 18 C 0.05 0.76 7.42 -38.47 -0.29 0.48 16 19 C -0.11 -1.52 10.07 -39.47 -0.40 -1.92 16 20 C -0.10 -1.25 10.01 -39.54 -0.40 -1.65 16 21 C -0.15 -1.83 9.98 -39.94 -0.40 -2.23 16 22 C -0.07 -1.00 8.31 -39.69 -0.33 -1.33 16 23 C -0.11 -1.91 5.25 -105.16 -0.55 -2.46 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 1.00 4.70 -51.93 -0.24 0.76 16 29 H 0.06 1.34 2.80 -51.93 -0.15 1.19 16 30 H 0.05 0.99 7.81 -51.92 -0.41 0.58 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 33 H 0.05 0.83 7.84 -51.93 -0.41 0.42 16 34 H 0.20 3.00 8.06 -52.48 -0.42 2.58 16 35 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 314.94 15.07 4.75 4.75 Total: -1.00 -32.86 314.94 -5.98 -38.84 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.01 Total: -0.66 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.55 Total: -8.38 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.40 Total: -40.63 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.31 Total: -12.03 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.26 Total: 18.12 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.86 -5.98 -38.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453597679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.024 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds