Wall clock time and date at job start Mon Mar 30 2020 01:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00098 * 2 1 4 4 C 1.52994 * 109.46883 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47430 * 66.37964 * 4 3 2 6 6 C 1.36931 * 119.99824 * 277.21771 * 5 4 3 7 7 H 1.07999 * 120.00337 * 145.13422 * 6 5 4 8 8 C 1.38813 * 120.00146 * 325.13491 * 6 5 4 9 9 N 1.31622 * 120.00474 * 155.52767 * 8 6 5 10 10 Si 1.86798 * 119.99781 * 335.52535 * 8 6 5 11 11 H 1.48496 * 109.47332 * 95.28140 * 10 8 6 12 12 H 1.48503 * 109.47350 * 215.27955 * 10 8 6 13 13 H 1.48498 * 109.47262 * 335.27884 * 10 8 6 14 14 C 1.46502 * 120.00032 * 97.21022 * 5 4 3 15 15 C 1.50696 * 109.47174 * 269.43359 * 14 5 4 16 16 C 1.33993 * 126.90846 * 263.04783 * 15 14 5 17 17 O 1.34447 * 110.15530 * 179.97438 * 16 15 14 18 18 C 1.34810 * 110.89124 * 0.02562 * 17 16 15 19 19 C 1.38941 * 133.50000 * 180.02562 * 18 17 16 20 20 C 1.37843 * 119.81969 * 179.97438 * 19 18 17 21 21 C 1.38747 * 120.68358 * 0.02562 * 20 19 18 22 22 C 1.36731 * 120.42090 * 359.97438 * 21 20 19 23 23 C 1.39410 * 119.71239 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47283 * 59.99888 * 1 2 3 25 25 H 1.08998 * 109.47645 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47073 * 300.00178 * 1 2 3 27 27 H 1.09003 * 109.46884 * 60.00336 * 3 2 1 28 28 H 1.08997 * 109.46859 * 300.00416 * 3 2 1 29 29 H 1.08998 * 109.47361 * 306.37573 * 4 3 2 30 30 H 1.09008 * 109.46850 * 186.37657 * 4 3 2 31 31 H 0.96993 * 120.00117 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.46758 * 149.43502 * 14 5 4 33 33 H 1.09001 * 109.46940 * 29.43837 * 14 5 4 34 34 H 1.08006 * 124.92367 * 359.95730 * 16 15 14 35 35 H 1.08003 * 120.08736 * 0.23344 * 19 18 17 36 36 H 1.07999 * 119.65784 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.78697 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.14740 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9781 0.5945 -1.2664 6 6 3.9583 -0.7646 -1.4322 7 1 3.7253 -1.1875 -2.3982 8 6 4.2378 -1.5989 -0.3585 9 7 3.7742 -2.8307 -0.3440 10 14 5.2719 -0.9734 1.0658 11 1 4.3801 -0.4798 2.1458 12 1 6.1161 -2.0782 1.5874 13 1 6.1417 0.1350 0.5968 14 6 4.4417 1.4586 -2.3549 15 6 3.2761 1.8238 -3.2375 16 6 2.9193 1.2315 -4.3853 17 8 1.8272 1.8279 -4.8943 18 6 1.4188 2.8397 -4.1025 19 6 0.3690 3.7470 -4.1749 20 6 0.2088 4.6905 -3.1828 21 6 1.0865 4.7454 -2.1096 22 6 2.1260 3.8618 -2.0194 23 6 2.3040 2.9005 -3.0133 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8498 0.5481 0.8265 30 1 3.9784 2.1740 0.1135 31 1 3.9698 -3.4137 0.4060 32 1 5.1918 0.9304 -2.9436 33 1 4.8796 2.3653 -1.9376 34 1 3.4345 0.3962 -4.8363 35 1 -0.3220 3.7105 -5.0041 36 1 -0.6083 5.3942 -3.2415 37 1 0.9476 5.4909 -1.3405 38 1 2.8062 3.9082 -1.1819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453597679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:39 Heat of formation + Delta-G solvation = 2.268062 kcal Electronic energy + Delta-G solvation = -22126.143304 eV Core-core repulsion = 18935.934791 eV Total energy + Delta-G solvation = -3190.208513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.27038 -39.07238 -38.63929 -37.33498 -34.34915 -33.20348 -31.56817 -30.90897 -29.81295 -27.67441 -27.15755 -24.62074 -24.16654 -23.10104 -22.78685 -20.82658 -18.72545 -18.01964 -17.96476 -17.68810 -16.98683 -16.91119 -16.48333 -16.33673 -15.81010 -15.46185 -15.04393 -14.71221 -14.66484 -14.41988 -13.93924 -13.74664 -13.45085 -13.31998 -12.94283 -12.76339 -12.64247 -12.44625 -12.29470 -12.06378 -11.70842 -11.64312 -11.38053 -10.90814 -10.50196 -10.21188 -9.50107 -9.02013 -8.71400 -8.03611 -5.36501 0.08102 0.49277 1.36620 1.45025 1.52240 1.55404 1.99930 2.55255 2.84801 3.15638 3.17744 3.62046 3.66013 3.81539 4.09576 4.20343 4.31603 4.36818 4.41672 4.50805 4.52293 4.55148 4.57668 4.65204 4.66941 4.70686 4.81506 4.88591 5.01307 5.12757 5.15030 5.39056 5.45782 5.58744 5.62324 5.85153 6.04398 6.28544 6.33151 6.59277 7.08576 7.77791 8.15782 9.16947 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021217 B = 0.006950 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.355655 B = 4027.529086 C = 4323.677352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.042 3.958 4 C 0.128 3.872 5 N -0.598 5.598 6 C -0.232 4.232 7 H 0.035 0.965 8 C -0.004 4.004 9 N -0.944 5.944 10 Si 0.933 3.067 11 H -0.285 1.285 12 H -0.316 1.316 13 H -0.254 1.254 14 C 0.209 3.791 15 C -0.186 4.186 16 C -0.007 4.007 17 O -0.213 6.213 18 C 0.015 3.985 19 C -0.120 4.120 20 C -0.092 4.092 21 C -0.136 4.136 22 C -0.083 4.083 23 C -0.132 4.132 24 H 0.030 0.970 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.255 0.745 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.215 0.785 35 H 0.145 0.855 36 H 0.168 0.832 37 H 0.157 0.843 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 17.850 -3.281 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.037 4.037 4 C 0.003 3.997 5 N -0.319 5.319 6 C -0.362 4.362 7 H 0.053 0.947 8 C -0.200 4.200 9 N -0.588 5.588 10 Si 0.764 3.236 11 H -0.213 1.213 12 H -0.246 1.246 13 H -0.178 1.178 14 C 0.084 3.916 15 C -0.190 4.190 16 C -0.072 4.072 17 O -0.116 6.116 18 C -0.032 4.032 19 C -0.138 4.138 20 C -0.110 4.110 21 C -0.154 4.154 22 C -0.101 4.101 23 C -0.133 4.133 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.231 0.769 35 H 0.163 0.837 36 H 0.186 0.814 37 H 0.175 0.825 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.804 17.479 -3.447 18.738 hybrid contribution 0.240 -0.595 0.709 0.956 sum -5.564 16.885 -2.738 17.988 Atomic orbital electron populations 1.22692 0.82078 1.02049 0.99501 1.88254 1.19152 1.28376 1.95121 1.23412 0.96209 0.84613 0.99458 1.21466 0.91942 0.97586 0.88717 1.44085 1.73878 1.02137 1.11821 1.18306 1.40131 0.81193 0.96542 0.94740 1.25700 0.99327 0.94950 1.00060 1.70045 1.46286 1.09721 1.32774 0.86030 0.79828 0.77058 0.80659 1.21312 1.24594 1.17788 1.19379 0.90246 0.93991 0.87970 1.22348 1.01990 0.97229 0.97399 1.24064 0.87817 0.98959 0.96369 1.83931 1.40574 1.40232 1.46824 1.20213 0.99034 0.92115 0.91798 1.20296 0.96205 0.94868 1.02438 1.21316 0.99868 0.97410 0.92409 1.21140 0.94768 0.99785 0.99696 1.20521 0.98948 0.93547 0.97040 1.20078 0.97040 0.98765 0.97395 0.95102 0.90805 0.92952 0.93367 0.92647 0.95116 0.88929 0.93615 0.91396 0.90704 0.76887 0.83730 0.81445 0.82494 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.25 11.01 113.37 1.25 2.49 16 2 O -0.39 -18.56 9.89 -148.98 -1.47 -20.04 16 3 C 0.04 1.64 6.27 71.98 0.45 2.09 16 4 C 0.13 5.31 5.26 86.38 0.45 5.77 16 5 N -0.60 -27.27 2.12 -706.34 -1.50 -28.77 16 6 C -0.23 -13.03 9.11 84.03 0.77 -12.26 16 7 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 8 C 0.00 -0.24 5.31 84.86 0.45 0.21 16 9 N -0.94 -60.29 13.97 21.65 0.30 -59.99 16 10 Si 0.93 46.86 25.07 68.60 1.72 48.58 16 11 H -0.28 -14.05 6.66 99.48 0.66 -13.38 16 12 H -0.32 -16.28 7.11 99.48 0.71 -15.58 16 13 H -0.25 -11.75 7.11 99.48 0.71 -11.04 16 14 C 0.21 7.83 6.25 85.63 0.54 8.36 16 15 C -0.19 -6.74 5.87 -18.60 -0.11 -6.85 16 16 C -0.01 -0.25 11.89 66.85 0.79 0.55 16 17 O -0.21 -7.57 10.58 -8.92 -0.09 -7.67 16 18 C 0.02 0.50 7.42 22.99 0.17 0.67 16 19 C -0.12 -2.96 10.07 22.34 0.23 -2.73 16 20 C -0.09 -1.78 10.01 22.30 0.22 -1.56 16 21 C -0.14 -2.78 9.98 22.04 0.22 -2.56 16 22 C -0.08 -2.20 8.31 22.20 0.18 -2.02 16 23 C -0.13 -4.34 5.25 -20.21 -0.11 -4.45 16 24 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 25 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 2.12 4.70 -2.39 -0.01 2.11 16 29 H 0.03 1.45 2.80 -2.39 -0.01 1.44 16 30 H 0.09 3.07 7.81 -2.38 -0.02 3.05 16 31 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 32 H 0.07 2.52 8.04 -2.38 -0.02 2.50 16 33 H 0.07 2.39 7.84 -2.39 -0.02 2.37 16 34 H 0.21 6.66 8.06 -2.91 -0.02 6.64 16 35 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -73.61 314.94 5.48 -68.14 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.01 Total: 12.03 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 5.51 Total: -12.29 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -1.20 Total: -88.76 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.57 Total: -27.70 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.72 Total: 48.58 kcal Total: -73.61 5.48 -68.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453597679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.406 kcal (2) G-P(sol) polarization free energy of solvation -73.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds