Wall clock time and date at job start Mon Mar 30 2020 01:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99812 * 2 1 4 4 C 1.52994 * 109.47081 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46865 * 65.00281 * 4 3 2 6 6 C 1.36937 * 120.00217 * 269.99910 * 5 4 3 7 7 H 1.07997 * 119.99683 * 320.95025 * 6 5 4 8 8 C 1.38812 * 120.00406 * 140.95352 * 6 5 4 9 9 N 1.31618 * 119.99297 * 336.82745 * 8 6 5 10 10 Si 1.86793 * 120.00424 * 156.82635 * 8 6 5 11 11 H 1.48502 * 109.46787 * 60.00036 * 10 8 6 12 12 H 1.48496 * 109.47203 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47049 * 300.00065 * 10 8 6 14 14 C 1.46501 * 119.99958 * 90.00239 * 5 4 3 15 15 C 1.50696 * 109.47611 * 84.13176 * 14 5 4 16 16 C 1.38745 * 119.79419 * 85.12529 * 15 14 5 17 17 C 1.37844 * 120.68736 * 179.97438 * 16 15 14 18 18 C 1.38945 * 119.81747 * 0.02562 * 17 16 15 19 19 O 1.34813 * 133.49536 * 180.02562 * 18 17 16 20 20 C 1.34453 * 110.88637 * 179.97438 * 19 18 17 21 21 C 1.33994 * 110.15374 * 0.02562 * 20 19 18 22 22 C 1.40494 * 119.22335 * 0.02562 * 18 17 16 23 23 C 1.36747 * 119.79154 * 265.15552 * 15 14 5 24 24 H 1.08998 * 109.46904 * 59.99652 * 1 2 3 25 25 H 1.08997 * 109.46585 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46876 * 299.99860 * 1 2 3 27 27 H 1.09002 * 109.46771 * 60.00173 * 3 2 1 28 28 H 1.08996 * 109.47480 * 300.00405 * 3 2 1 29 29 H 1.09002 * 109.47876 * 305.00655 * 4 3 2 30 30 H 1.09003 * 109.47568 * 184.99755 * 4 3 2 31 31 H 0.97007 * 119.99445 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47153 * 324.12601 * 14 5 4 33 33 H 1.09006 * 109.47067 * 204.13069 * 14 5 4 34 34 H 1.08002 * 119.65328 * 359.97438 * 16 15 14 35 35 H 1.08000 * 120.09493 * 179.97438 * 17 16 15 36 36 H 1.07999 * 124.91709 * 179.97438 * 20 19 18 37 37 H 1.08000 * 126.90279 * 180.02562 * 21 20 19 38 38 H 1.07999 * 120.13785 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0978 -0.7973 -1.3346 7 1 4.4904 -1.3568 -0.4985 8 6 3.7161 -1.4582 -2.4941 9 7 2.8466 -0.9035 -3.3118 10 14 4.4364 -3.1347 -2.8939 11 1 4.0984 -4.0902 -1.8085 12 1 3.8705 -3.6234 -4.1769 13 1 5.9123 -3.0235 -3.0137 14 6 4.2882 1.4000 -2.4130 15 6 5.7063 1.8989 -2.3073 16 6 6.7510 1.1083 -2.7640 17 6 8.0550 1.5466 -2.6768 18 6 8.3299 2.7923 -2.1260 19 8 9.4688 3.4803 -1.9094 20 6 9.2093 4.6693 -1.3379 21 6 7.8901 4.8148 -1.1534 22 6 7.2677 3.5876 -1.6644 23 6 5.9553 3.1277 -1.7613 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8465 -0.8899 29 1 3.8509 0.5685 0.8426 30 1 3.9785 2.1766 0.0902 31 1 2.5796 -1.3655 -4.1219 32 1 3.6056 2.2492 -2.4433 33 1 4.1770 0.8118 -3.3240 34 1 6.5404 0.1395 -3.1922 35 1 8.8610 0.9232 -3.0348 36 1 9.9560 5.4007 -1.0662 37 1 7.3861 5.6645 -0.7171 38 1 5.1387 3.7393 -1.4072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453601192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:33 Heat of formation + Delta-G solvation = 10.273819 kcal Electronic energy + Delta-G solvation = -21239.278396 eV Core-core repulsion = 18049.417039 eV Total energy + Delta-G solvation = -3189.861357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.01548 -37.92932 -36.94240 -35.01596 -32.41145 -31.55918 -30.64706 -28.95086 -28.13052 -25.55546 -25.52879 -23.27610 -22.37948 -21.30118 -20.93535 -19.88417 -17.03152 -16.86707 -16.48386 -15.73282 -15.55457 -15.04839 -14.79937 -14.44600 -13.98162 -13.76509 -13.47708 -13.42008 -13.15162 -12.75527 -12.31722 -12.03085 -11.63370 -11.48796 -11.27997 -10.97724 -10.83602 -10.68113 -10.53721 -10.29528 -10.12568 -9.92610 -9.83924 -9.80679 -8.72049 -8.38214 -7.89681 -7.79644 -6.53613 -5.75573 -3.25362 1.38559 1.93489 2.70281 3.13551 3.41571 3.47212 3.49914 4.25691 4.56225 4.75269 4.78866 5.05248 5.39674 5.40899 5.54968 5.58236 5.69711 5.84333 5.86788 5.97824 6.00376 6.14005 6.18070 6.24255 6.25720 6.27079 6.37757 6.50369 6.57147 6.71837 6.76843 6.90161 6.97664 7.16785 7.32752 7.52236 7.64852 7.92489 8.15664 8.58578 9.23221 9.83725 10.44134 11.28850 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017847 B = 0.005923 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.518780 B = 4725.951775 C = 5952.357523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.350 6.350 3 C 0.049 3.951 4 C 0.146 3.854 5 N -0.567 5.567 6 C -0.243 4.243 7 H 0.058 0.942 8 C 0.020 3.980 9 N -0.879 5.879 10 Si 0.887 3.113 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.186 3.814 15 C -0.086 4.086 16 C -0.062 4.062 17 C -0.118 4.118 18 C 0.033 3.967 19 O -0.203 6.203 20 C -0.011 4.011 21 C -0.210 4.210 22 C -0.137 4.137 23 C -0.080 4.080 24 H 0.031 0.969 25 H 0.073 0.927 26 H 0.021 0.979 27 H 0.019 0.981 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.252 0.748 32 H 0.032 0.968 33 H 0.098 0.902 34 H 0.135 0.865 35 H 0.122 0.878 36 H 0.200 0.800 37 H 0.151 0.849 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.148 9.624 3.134 11.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.268 6.268 3 C -0.031 4.031 4 C 0.019 3.981 5 N -0.285 5.285 6 C -0.373 4.373 7 H 0.076 0.924 8 C -0.181 4.181 9 N -0.521 5.521 10 Si 0.716 3.284 11 H -0.207 1.207 12 H -0.218 1.218 13 H -0.209 1.209 14 C 0.059 3.941 15 C -0.090 4.090 16 C -0.080 4.080 17 C -0.137 4.137 18 C -0.014 4.014 19 O -0.105 6.105 20 C -0.076 4.076 21 C -0.229 4.229 22 C -0.138 4.138 23 C -0.100 4.100 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.153 0.847 35 H 0.140 0.860 36 H 0.216 0.784 37 H 0.168 0.832 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.394 9.254 2.910 11.100 hybrid contribution -0.081 -0.414 -0.107 0.436 sum 5.313 8.840 2.803 10.688 Atomic orbital electron populations 1.22555 0.83931 1.01423 0.98124 1.88168 1.16850 1.26975 1.94759 1.23262 0.97910 0.84802 0.97081 1.21028 0.89542 0.96324 0.91190 1.43637 1.74292 1.02699 1.07908 1.18832 1.35740 0.81890 1.00843 0.92438 1.25094 0.96061 0.96901 1.00002 1.70085 1.29232 1.39102 1.13632 0.86626 0.79288 0.85012 0.77427 1.20735 1.21774 1.20886 1.19859 0.85946 0.93698 0.94547 1.20980 1.00011 0.92410 0.95573 1.20992 0.90235 0.99474 0.97339 1.19920 0.97541 0.92405 1.03828 1.19588 0.83145 0.95220 1.03436 1.83935 1.32790 1.27090 1.66716 1.23751 0.97204 0.86998 0.99647 1.22465 0.93754 0.99152 1.07551 1.19909 0.94673 0.94931 1.04277 1.20156 0.93587 0.96264 0.99959 0.95027 0.90811 0.96062 0.96296 0.94504 0.93054 0.93294 0.93788 0.94950 0.88447 0.84683 0.85964 0.78372 0.83179 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 11.01 101.05 1.11 1.78 16 2 O -0.35 -7.92 10.18 -35.23 -0.36 -8.28 16 3 C 0.05 0.98 6.28 37.15 0.23 1.22 16 4 C 0.15 3.05 6.11 -4.04 -0.02 3.02 16 5 N -0.57 -13.49 2.38 -174.61 -0.42 -13.91 16 6 C -0.24 -6.45 8.93 -15.06 -0.13 -6.59 16 7 H 0.06 1.58 7.93 -52.49 -0.42 1.17 16 8 C 0.02 0.54 4.82 -17.43 -0.08 0.46 16 9 N -0.88 -24.43 11.80 55.49 0.65 -23.78 16 10 Si 0.89 21.19 29.61 -169.99 -5.03 16.16 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.19 4.13 5.34 -5.19 -0.03 4.10 16 15 C -0.09 -1.72 5.42 -104.98 -0.57 -2.29 16 16 C -0.06 -1.20 9.68 -39.54 -0.38 -1.58 16 17 C -0.12 -2.09 10.07 -39.46 -0.40 -2.49 16 18 C 0.03 0.58 7.42 -38.47 -0.29 0.30 16 19 O -0.20 -3.23 10.58 3.89 0.04 -3.19 16 20 C -0.01 -0.14 11.96 29.24 0.35 0.21 16 21 C -0.21 -2.89 11.14 -37.62 -0.42 -3.31 16 22 C -0.14 -2.37 6.40 -105.17 -0.67 -3.04 16 23 C -0.08 -1.45 9.53 -39.69 -0.38 -1.83 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 30 H 0.05 0.91 7.94 -51.93 -0.41 0.50 16 31 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.03 0.69 8.01 -51.93 -0.42 0.27 16 33 H 0.10 2.44 5.77 -51.93 -0.30 2.14 16 34 H 0.14 2.71 8.06 -52.49 -0.42 2.28 16 35 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.20 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.12 1.90 8.05 -52.49 -0.42 1.48 16 LS Contribution 326.98 15.07 4.93 4.93 Total: -1.00 -30.29 326.98 -7.19 -37.48 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.32 Total: 0.62 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.68 Total: -10.04 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.24 Total: -37.68 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.32 Total: -11.47 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.29 -7.19 -37.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453601192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.756 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds