Wall clock time and date at job start Mon Mar 30 2020 01:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99812 * 2 1 4 4 C 1.52994 * 109.47081 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46865 * 65.00281 * 4 3 2 6 6 C 1.36937 * 120.00217 * 269.99910 * 5 4 3 7 7 H 1.07997 * 119.99683 * 320.95025 * 6 5 4 8 8 C 1.38812 * 120.00406 * 140.95352 * 6 5 4 9 9 N 1.31618 * 119.99297 * 336.82745 * 8 6 5 10 10 Si 1.86793 * 120.00424 * 156.82635 * 8 6 5 11 11 H 1.48502 * 109.46787 * 60.00036 * 10 8 6 12 12 H 1.48496 * 109.47203 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47049 * 300.00065 * 10 8 6 14 14 C 1.46501 * 119.99958 * 90.00239 * 5 4 3 15 15 C 1.50696 * 109.47611 * 84.13176 * 14 5 4 16 16 C 1.38745 * 119.79419 * 85.12529 * 15 14 5 17 17 C 1.37844 * 120.68736 * 179.97438 * 16 15 14 18 18 C 1.38945 * 119.81747 * 0.02562 * 17 16 15 19 19 O 1.34813 * 133.49536 * 180.02562 * 18 17 16 20 20 C 1.34453 * 110.88637 * 179.97438 * 19 18 17 21 21 C 1.33994 * 110.15374 * 0.02562 * 20 19 18 22 22 C 1.40494 * 119.22335 * 0.02562 * 18 17 16 23 23 C 1.36747 * 119.79154 * 265.15552 * 15 14 5 24 24 H 1.08998 * 109.46904 * 59.99652 * 1 2 3 25 25 H 1.08997 * 109.46585 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46876 * 299.99860 * 1 2 3 27 27 H 1.09002 * 109.46771 * 60.00173 * 3 2 1 28 28 H 1.08996 * 109.47480 * 300.00405 * 3 2 1 29 29 H 1.09002 * 109.47876 * 305.00655 * 4 3 2 30 30 H 1.09003 * 109.47568 * 184.99755 * 4 3 2 31 31 H 0.97007 * 119.99445 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47153 * 324.12601 * 14 5 4 33 33 H 1.09006 * 109.47067 * 204.13069 * 14 5 4 34 34 H 1.08002 * 119.65328 * 359.97438 * 16 15 14 35 35 H 1.08000 * 120.09493 * 179.97438 * 17 16 15 36 36 H 1.07999 * 124.91709 * 179.97438 * 20 19 18 37 37 H 1.08000 * 126.90279 * 180.02562 * 21 20 19 38 38 H 1.07999 * 120.13785 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0978 -0.7973 -1.3346 7 1 4.4904 -1.3568 -0.4985 8 6 3.7161 -1.4582 -2.4941 9 7 2.8466 -0.9035 -3.3118 10 14 4.4364 -3.1347 -2.8939 11 1 4.0984 -4.0902 -1.8085 12 1 3.8705 -3.6234 -4.1769 13 1 5.9123 -3.0235 -3.0137 14 6 4.2882 1.4000 -2.4130 15 6 5.7063 1.8989 -2.3073 16 6 6.7510 1.1083 -2.7640 17 6 8.0550 1.5466 -2.6768 18 6 8.3299 2.7923 -2.1260 19 8 9.4688 3.4803 -1.9094 20 6 9.2093 4.6693 -1.3379 21 6 7.8901 4.8148 -1.1534 22 6 7.2677 3.5876 -1.6644 23 6 5.9553 3.1277 -1.7613 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8465 -0.8899 29 1 3.8509 0.5685 0.8426 30 1 3.9785 2.1766 0.0902 31 1 2.5796 -1.3655 -4.1219 32 1 3.6056 2.2492 -2.4433 33 1 4.1770 0.8118 -3.3240 34 1 6.5404 0.1395 -3.1922 35 1 8.8610 0.9232 -3.0348 36 1 9.9560 5.4007 -1.0662 37 1 7.3861 5.6645 -0.7171 38 1 5.1387 3.7393 -1.4072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453601192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:33 Heat of formation + Delta-G solvation = -6.777982 kcal Electronic energy + Delta-G solvation = -21240.017818 eV Core-core repulsion = 18049.417039 eV Total energy + Delta-G solvation = -3190.600778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.23008 -39.43757 -38.51573 -36.74640 -33.62224 -33.49746 -32.15357 -30.28057 -29.73917 -27.29344 -27.05050 -24.99849 -23.75013 -22.78980 -22.12265 -21.54864 -18.70766 -18.27588 -17.79298 -17.15960 -16.94667 -16.76360 -16.53073 -16.00995 -15.64153 -15.25875 -15.14944 -14.96796 -14.59515 -13.92639 -13.69517 -13.47268 -13.30012 -13.06699 -12.92952 -12.67153 -12.57471 -12.40784 -12.10933 -12.04494 -11.85137 -11.66562 -11.56956 -11.04032 -10.42853 -10.27080 -9.31914 -9.05278 -8.46701 -7.76675 -5.29555 0.10865 0.51263 1.48404 1.50175 1.56022 1.56944 1.98486 2.56938 2.84540 3.21939 3.38497 3.66031 3.85133 3.88289 4.18617 4.23405 4.44282 4.45846 4.51168 4.52539 4.63209 4.67870 4.68304 4.76072 4.84212 4.85524 4.87676 4.93538 5.10778 5.25880 5.34508 5.42047 5.60920 5.62884 5.78984 5.83314 5.93656 6.32780 6.54269 6.66550 7.27236 7.91360 8.47332 9.24009 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017847 B = 0.005923 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.518780 B = 4725.951775 C = 5952.357523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.392 6.392 3 C 0.054 3.946 4 C 0.143 3.857 5 N -0.580 5.580 6 C -0.243 4.243 7 H 0.042 0.958 8 C -0.019 4.019 9 N -0.905 5.905 10 Si 0.937 3.063 11 H -0.283 1.283 12 H -0.294 1.294 13 H -0.277 1.277 14 C 0.197 3.803 15 C -0.101 4.101 16 C -0.084 4.084 17 C -0.115 4.115 18 C 0.016 3.984 19 O -0.211 6.211 20 C 0.009 3.991 21 C -0.223 4.223 22 C -0.147 4.147 23 C -0.080 4.080 24 H 0.026 0.974 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.024 0.976 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.247 0.753 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.141 0.859 36 H 0.254 0.746 37 H 0.181 0.819 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.608 11.816 4.445 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.025 4.025 4 C 0.017 3.983 5 N -0.299 5.299 6 C -0.374 4.374 7 H 0.059 0.941 8 C -0.217 4.217 9 N -0.548 5.548 10 Si 0.765 3.235 11 H -0.209 1.209 12 H -0.220 1.220 13 H -0.203 1.203 14 C 0.071 3.929 15 C -0.104 4.104 16 C -0.103 4.103 17 C -0.133 4.133 18 C -0.031 4.031 19 O -0.113 6.113 20 C -0.055 4.055 21 C -0.242 4.242 22 C -0.148 4.148 23 C -0.099 4.099 24 H 0.045 0.955 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.159 0.841 36 H 0.269 0.731 37 H 0.198 0.802 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.867 11.465 4.233 14.019 hybrid contribution -0.435 -0.940 -0.439 1.125 sum 6.432 10.525 3.794 12.905 Atomic orbital electron populations 1.22691 0.81811 1.02253 0.99409 1.88096 1.19398 1.28539 1.95071 1.23196 0.97026 0.84227 0.98092 1.21137 0.90536 0.97142 0.89516 1.43763 1.75086 1.02112 1.08969 1.18826 1.34847 0.83355 1.00355 0.94076 1.25570 0.96553 0.99443 1.00132 1.70186 1.30632 1.40181 1.13849 0.85843 0.78879 0.81975 0.76765 1.20943 1.22009 1.20275 1.19595 0.87700 0.92875 0.92749 1.20681 0.98467 0.93752 0.97468 1.20850 0.91301 0.99163 0.99015 1.20011 0.97175 0.92994 1.03118 1.19714 0.84184 0.95453 1.03725 1.83963 1.32065 1.28318 1.66999 1.24834 0.98212 0.85857 0.96551 1.22832 0.94169 0.98831 1.08343 1.20319 0.94163 0.96542 1.03803 1.20228 0.94768 0.95528 0.99381 0.95498 0.90357 0.92820 0.92658 0.95769 0.93944 0.90821 0.94369 0.94694 0.91723 0.86540 0.84109 0.73063 0.80176 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.23 11.01 113.37 1.25 2.48 16 2 O -0.39 -17.74 10.18 -148.98 -1.52 -19.26 16 3 C 0.05 2.11 6.28 71.98 0.45 2.56 16 4 C 0.14 5.93 6.11 86.38 0.53 6.46 16 5 N -0.58 -28.23 2.38 -706.35 -1.68 -29.91 16 6 C -0.24 -13.30 8.93 84.03 0.75 -12.55 16 7 H 0.04 2.35 7.93 -2.91 -0.02 2.33 16 8 C -0.02 -1.04 4.82 84.86 0.41 -0.63 16 9 N -0.91 -52.17 11.80 21.65 0.26 -51.91 16 10 Si 0.94 44.86 29.61 68.60 2.03 46.89 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 C 0.20 9.04 5.34 85.63 0.46 9.50 16 15 C -0.10 -4.08 5.42 -20.09 -0.11 -4.19 16 16 C -0.08 -3.38 9.68 22.30 0.22 -3.16 16 17 C -0.11 -4.01 10.07 22.35 0.23 -3.79 16 18 C 0.02 0.54 7.42 22.99 0.17 0.72 16 19 O -0.21 -6.04 10.58 -9.01 -0.10 -6.14 16 20 C 0.01 0.19 11.96 66.85 0.80 0.98 16 21 C -0.22 -5.23 11.14 23.54 0.26 -4.97 16 22 C -0.15 -4.79 6.40 -20.22 -0.13 -4.92 16 23 C -0.08 -2.81 9.53 22.20 0.21 -2.60 16 24 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 1.82 8.04 -2.39 -0.02 1.80 16 30 H 0.07 2.64 7.94 -2.39 -0.02 2.62 16 31 H 0.25 13.94 8.31 -92.70 -0.77 13.17 16 32 H 0.03 1.53 8.01 -2.39 -0.02 1.51 16 33 H 0.06 3.41 5.77 -2.38 -0.01 3.39 16 34 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 35 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 36 H 0.25 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.13 4.09 8.05 -2.91 -0.02 4.07 16 Total: -1.00 -67.41 326.98 5.53 -61.88 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 1.04 Total: 12.56 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 5.49 Total: -14.11 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -1.42 Total: -81.82 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -1.61 Total: -25.39 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -67.41 5.53 -61.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453601192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.105 kcal (2) G-P(sol) polarization free energy of solvation -67.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds