Wall clock time and date at job start Mon Mar 30 2020 01:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99867 * 2 1 4 4 C 1.53007 * 109.46762 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47197 * 65.00428 * 4 3 2 6 6 C 1.36942 * 119.99860 * 269.99827 * 5 4 3 7 7 H 1.07997 * 120.00102 * 142.87591 * 6 5 4 8 8 C 1.38813 * 119.99705 * 322.87371 * 6 5 4 9 9 N 1.31623 * 120.00343 * 336.71273 * 8 6 5 10 10 Si 1.86800 * 120.00008 * 156.70922 * 8 6 5 11 11 H 1.48500 * 109.46873 * 89.99918 * 10 8 6 12 12 H 1.48491 * 109.47446 * 209.99844 * 10 8 6 13 13 H 1.48506 * 109.47191 * 330.00315 * 10 8 6 14 14 C 1.46502 * 120.00356 * 89.99511 * 5 4 3 15 15 C 1.50700 * 109.47069 * 268.15360 * 14 5 4 16 16 C 1.34006 * 124.92345 * 90.62347 * 15 14 5 17 17 C 1.46782 * 106.18574 * 180.02562 * 16 15 14 18 18 C 1.39398 * 134.37189 * 179.31301 * 17 16 15 19 19 C 1.36740 * 119.71850 * 180.02562 * 18 17 16 20 20 C 1.38745 * 120.41261 * 0.02562 * 19 18 17 21 21 C 1.37841 * 120.68983 * 359.97438 * 20 19 18 22 22 C 1.38944 * 119.81902 * 0.27695 * 21 20 19 23 23 O 1.34450 * 124.91984 * 269.97177 * 15 14 5 24 24 H 1.08996 * 109.47445 * 299.99984 * 1 2 3 25 25 H 1.08999 * 109.47246 * 60.00359 * 1 2 3 26 26 H 1.08999 * 109.47022 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46977 * 60.00459 * 3 2 1 28 28 H 1.09001 * 109.47022 * 299.99341 * 3 2 1 29 29 H 1.08997 * 109.47628 * 305.00079 * 4 3 2 30 30 H 1.09000 * 109.46997 * 184.99643 * 4 3 2 31 31 H 0.96992 * 120.00363 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.46649 * 148.15241 * 14 5 4 33 33 H 1.09000 * 109.46795 * 28.15140 * 14 5 4 34 34 H 1.08000 * 126.90234 * 359.37051 * 16 15 14 35 35 H 1.07995 * 120.14224 * 0.02723 * 18 17 16 36 36 H 1.07999 * 119.79648 * 180.02562 * 19 18 17 37 37 H 1.08008 * 119.65520 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.09605 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7975 -1.3345 7 1 3.8301 -1.3084 -2.2476 8 6 4.5648 -1.5209 -0.2457 9 7 5.3049 -0.9301 0.6685 10 14 4.1427 -3.3328 -0.0777 11 1 5.1851 -4.1483 -0.7511 12 1 4.0828 -3.6959 1.3609 13 1 2.8245 -3.5947 -0.7096 14 6 4.2883 1.3998 -2.4131 15 6 3.0551 1.5551 -3.2652 16 6 2.1528 2.5376 -3.1371 17 6 1.1328 2.2928 -4.1639 18 6 -0.0483 2.9323 -4.5366 19 6 -0.7930 2.4329 -5.5690 20 6 -0.3803 1.2945 -6.2463 21 6 0.7848 0.6487 -5.8919 22 6 1.5535 1.1366 -4.8424 23 8 2.7073 0.7351 -4.2723 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8901 29 1 3.8508 0.5685 0.8426 30 1 3.9785 2.1765 0.0901 31 1 5.6308 -1.4355 1.4295 32 1 5.0776 0.9283 -2.9985 33 1 4.6227 2.3809 -2.0757 34 1 2.1671 3.3412 -2.4158 35 1 -0.3740 3.8185 -4.0123 36 1 -1.7081 2.9277 -5.8591 37 1 -0.9781 0.9104 -7.0597 38 1 1.0972 -0.2366 -6.4260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453604562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:30 Heat of formation + Delta-G solvation = 10.315828 kcal Electronic energy + Delta-G solvation = -21707.308321 eV Core-core repulsion = 18517.448786 eV Total energy + Delta-G solvation = -3189.859535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92756 -37.65612 -37.17700 -35.40059 -32.56564 -31.43048 -30.14817 -29.85757 -28.40513 -25.72732 -25.62679 -23.29890 -22.45252 -21.45414 -20.87698 -20.14335 -16.99776 -16.75331 -16.41012 -15.88000 -15.50326 -15.16968 -14.88532 -14.63349 -14.03075 -13.94196 -13.51861 -13.48692 -13.09122 -12.78761 -12.47690 -11.99422 -11.81248 -11.76484 -11.34787 -11.17870 -10.85653 -10.79179 -10.73191 -10.60336 -10.21470 -10.02682 -9.79529 -9.65655 -8.78311 -8.46984 -8.31002 -7.69034 -6.68487 -5.79954 -3.34644 1.23526 1.63890 2.86724 3.25442 3.43463 3.49833 3.59078 3.97668 4.55169 4.70724 4.81889 5.00648 5.08835 5.34462 5.41645 5.47920 5.51366 5.60871 5.76936 5.81221 5.86724 5.94761 6.10522 6.11739 6.17579 6.18235 6.29883 6.42367 6.48821 6.58483 6.60179 6.62240 6.65551 6.87682 7.02805 7.56400 7.73423 7.87902 8.08209 8.50951 9.14416 9.77376 10.29233 11.23016 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.020169 B = 0.005978 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.917620 B = 4682.590590 C = 4812.581078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.038 3.962 4 C 0.141 3.859 5 N -0.559 5.559 6 C -0.251 4.251 7 H 0.059 0.941 8 C 0.026 3.974 9 N -0.888 5.888 10 Si 0.899 3.101 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.200 3.800 15 C 0.071 3.929 16 C -0.245 4.245 17 C -0.118 4.118 18 C -0.082 4.082 19 C -0.143 4.143 20 C -0.112 4.112 21 C -0.104 4.104 22 C 0.043 3.957 23 O -0.185 6.185 24 H 0.026 0.974 25 H 0.028 0.972 26 H 0.073 0.927 27 H 0.023 0.977 28 H 0.039 0.961 29 H 0.104 0.896 30 H 0.044 0.956 31 H 0.255 0.745 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.148 0.852 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.223 7.744 -7.494 14.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C -0.041 4.041 4 C 0.015 3.985 5 N -0.276 5.276 6 C -0.380 4.380 7 H 0.077 0.923 8 C -0.174 4.174 9 N -0.530 5.530 10 Si 0.729 3.271 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.202 1.202 14 C 0.071 3.929 15 C 0.019 3.981 16 C -0.265 4.265 17 C -0.119 4.119 18 C -0.100 4.100 19 C -0.161 4.161 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.005 4.005 23 O -0.085 6.085 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.166 0.834 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.829 7.243 -7.382 13.598 hybrid contribution -0.910 -0.539 0.273 1.092 sum -9.739 6.704 -7.110 13.797 Atomic orbital electron populations 1.22606 0.84234 1.01404 0.98359 1.88195 1.16560 1.27563 1.94840 1.23511 0.98581 0.84489 0.97502 1.21137 0.87837 0.96771 0.92728 1.43719 1.74416 1.03089 1.06396 1.18849 1.37730 0.81007 1.00408 0.92301 1.24993 0.95893 0.97931 0.98632 1.70010 1.33015 1.36505 1.13512 0.86370 0.78658 0.85184 0.76914 1.21539 1.21566 1.20199 1.19711 0.88192 0.96743 0.88239 1.24903 0.99752 0.86936 0.86527 1.22040 0.96593 1.04165 1.03681 1.20024 0.96999 0.96807 0.98077 1.20198 0.93181 0.99494 0.97155 1.20640 1.00418 0.97609 0.97420 1.20766 0.95684 0.96129 1.00393 1.19915 0.94661 1.01420 0.96290 1.19761 0.88077 0.95525 0.97154 1.84113 1.34350 1.49059 1.40934 0.95547 0.95353 0.90817 0.95886 0.94315 0.87800 0.93757 0.93564 0.90889 0.90379 0.83449 0.86247 0.86078 0.85484 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 101.05 1.11 1.68 16 2 O -0.35 -8.13 10.18 -35.23 -0.36 -8.49 16 3 C 0.04 0.78 6.28 37.16 0.23 1.02 16 4 C 0.14 3.20 5.77 -4.04 -0.02 3.18 16 5 N -0.56 -13.47 2.39 -174.60 -0.42 -13.89 16 6 C -0.25 -6.87 8.95 -15.06 -0.13 -7.01 16 7 H 0.06 1.69 7.93 -52.49 -0.42 1.27 16 8 C 0.03 0.71 4.91 -17.43 -0.09 0.63 16 9 N -0.89 -25.19 11.56 55.49 0.64 -24.55 16 10 Si 0.90 22.44 29.61 -169.99 -5.03 17.41 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.20 4.06 6.21 -5.19 -0.03 4.03 16 15 C 0.07 1.40 6.65 -35.80 -0.24 1.16 16 16 C -0.24 -4.36 9.07 -37.62 -0.34 -4.70 16 17 C -0.12 -2.06 6.40 -105.16 -0.67 -2.73 16 18 C -0.08 -1.18 10.05 -39.69 -0.40 -1.58 16 19 C -0.14 -1.79 9.98 -39.94 -0.40 -2.19 16 20 C -0.11 -1.42 10.01 -39.54 -0.40 -1.81 16 21 C -0.10 -1.59 10.07 -39.47 -0.40 -1.98 16 22 C 0.04 0.79 7.42 -38.47 -0.29 0.51 16 23 O -0.18 -3.85 10.58 3.90 0.04 -3.81 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.77 5.59 -51.93 -0.29 0.48 16 29 H 0.10 2.72 5.56 -51.93 -0.29 2.43 16 30 H 0.04 0.89 7.88 -51.93 -0.41 0.48 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.07 1.50 8.05 -51.93 -0.42 1.08 16 33 H 0.08 1.36 7.87 -51.93 -0.41 0.95 16 34 H 0.15 2.32 7.84 -52.49 -0.41 1.90 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -30.99 322.27 -7.49 -38.48 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.16 Total: -0.20 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.06 Total: -9.81 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.22 Total: -38.44 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.32 Total: -12.30 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.99 -7.49 -38.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453604562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.797 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds