Wall clock time and date at job start Mon Mar 30 2020 01:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99867 * 2 1 4 4 C 1.53007 * 109.46762 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47197 * 65.00428 * 4 3 2 6 6 C 1.36942 * 119.99860 * 269.99827 * 5 4 3 7 7 H 1.07997 * 120.00102 * 142.87591 * 6 5 4 8 8 C 1.38813 * 119.99705 * 322.87371 * 6 5 4 9 9 N 1.31623 * 120.00343 * 336.71273 * 8 6 5 10 10 Si 1.86800 * 120.00008 * 156.70922 * 8 6 5 11 11 H 1.48500 * 109.46873 * 89.99918 * 10 8 6 12 12 H 1.48491 * 109.47446 * 209.99844 * 10 8 6 13 13 H 1.48506 * 109.47191 * 330.00315 * 10 8 6 14 14 C 1.46502 * 120.00356 * 89.99511 * 5 4 3 15 15 C 1.50700 * 109.47069 * 268.15360 * 14 5 4 16 16 C 1.34006 * 124.92345 * 90.62347 * 15 14 5 17 17 C 1.46782 * 106.18574 * 180.02562 * 16 15 14 18 18 C 1.39398 * 134.37189 * 179.31301 * 17 16 15 19 19 C 1.36740 * 119.71850 * 180.02562 * 18 17 16 20 20 C 1.38745 * 120.41261 * 0.02562 * 19 18 17 21 21 C 1.37841 * 120.68983 * 359.97438 * 20 19 18 22 22 C 1.38944 * 119.81902 * 0.27695 * 21 20 19 23 23 O 1.34450 * 124.91984 * 269.97177 * 15 14 5 24 24 H 1.08996 * 109.47445 * 299.99984 * 1 2 3 25 25 H 1.08999 * 109.47246 * 60.00359 * 1 2 3 26 26 H 1.08999 * 109.47022 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46977 * 60.00459 * 3 2 1 28 28 H 1.09001 * 109.47022 * 299.99341 * 3 2 1 29 29 H 1.08997 * 109.47628 * 305.00079 * 4 3 2 30 30 H 1.09000 * 109.46997 * 184.99643 * 4 3 2 31 31 H 0.96992 * 120.00363 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.46649 * 148.15241 * 14 5 4 33 33 H 1.09000 * 109.46795 * 28.15140 * 14 5 4 34 34 H 1.08000 * 126.90234 * 359.37051 * 16 15 14 35 35 H 1.07995 * 120.14224 * 0.02723 * 18 17 16 36 36 H 1.07999 * 119.79648 * 180.02562 * 19 18 17 37 37 H 1.08008 * 119.65520 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.09605 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7975 -1.3345 7 1 3.8301 -1.3084 -2.2476 8 6 4.5648 -1.5209 -0.2457 9 7 5.3049 -0.9301 0.6685 10 14 4.1427 -3.3328 -0.0777 11 1 5.1851 -4.1483 -0.7511 12 1 4.0828 -3.6959 1.3609 13 1 2.8245 -3.5947 -0.7096 14 6 4.2883 1.3998 -2.4131 15 6 3.0551 1.5551 -3.2652 16 6 2.1528 2.5376 -3.1371 17 6 1.1328 2.2928 -4.1639 18 6 -0.0483 2.9323 -4.5366 19 6 -0.7930 2.4329 -5.5690 20 6 -0.3803 1.2945 -6.2463 21 6 0.7848 0.6487 -5.8919 22 6 1.5535 1.1366 -4.8424 23 8 2.7073 0.7351 -4.2723 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8901 29 1 3.8508 0.5685 0.8426 30 1 3.9785 2.1765 0.0901 31 1 5.6308 -1.4355 1.4295 32 1 5.0776 0.9283 -2.9985 33 1 4.6227 2.3809 -2.0757 34 1 2.1671 3.3412 -2.4158 35 1 -0.3740 3.8185 -4.0123 36 1 -1.7081 2.9277 -5.8591 37 1 -0.9781 0.9104 -7.0597 38 1 1.0972 -0.2366 -6.4260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453604562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:29 Heat of formation + Delta-G solvation = -7.596751 kcal Electronic energy + Delta-G solvation = -21708.085068 eV Core-core repulsion = 18517.448786 eV Total energy + Delta-G solvation = -3190.636283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.26439 -38.99578 -38.65468 -37.14882 -34.12149 -33.15762 -31.46643 -31.21405 -29.96926 -27.38705 -27.16209 -24.99056 -23.72115 -22.78070 -22.37640 -21.69453 -18.70299 -18.22971 -17.68451 -17.50706 -16.96624 -16.68000 -16.44832 -16.24574 -15.69096 -15.42122 -15.13331 -14.85818 -14.58476 -14.01140 -13.93311 -13.47442 -13.21544 -13.08083 -12.88830 -12.77205 -12.74995 -12.48984 -12.41678 -12.06084 -11.98621 -11.74629 -11.59926 -10.99007 -10.51505 -10.32949 -9.50416 -9.01166 -8.61794 -7.84911 -5.42785 0.05953 0.48180 1.40770 1.44992 1.49638 1.57688 1.96449 2.53612 2.84226 3.17039 3.28199 3.60461 3.70047 3.83983 4.14246 4.24631 4.35624 4.39516 4.40832 4.47454 4.53575 4.61013 4.63902 4.71138 4.74616 4.78207 4.87019 4.92258 4.95904 5.03708 5.37267 5.41232 5.54601 5.61953 5.67982 5.74049 5.90138 6.38107 6.41774 6.62525 7.16160 7.80409 8.29584 9.12770 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.020169 B = 0.005978 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.917620 B = 4682.590590 C = 4812.581078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.045 3.955 4 C 0.140 3.860 5 N -0.574 5.574 6 C -0.249 4.249 7 H 0.034 0.966 8 C -0.014 4.014 9 N -0.909 5.909 10 Si 0.945 3.055 11 H -0.283 1.283 12 H -0.287 1.287 13 H -0.286 1.286 14 C 0.204 3.796 15 C 0.037 3.963 16 C -0.226 4.226 17 C -0.144 4.144 18 C -0.085 4.085 19 C -0.135 4.135 20 C -0.095 4.095 21 C -0.126 4.126 22 C 0.008 3.992 23 O -0.218 6.218 24 H 0.052 0.948 25 H 0.031 0.969 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.252 0.748 32 H 0.057 0.943 33 H 0.107 0.893 34 H 0.168 0.832 35 H 0.145 0.855 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 9.345 -8.483 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.033 4.033 4 C 0.015 3.985 5 N -0.293 5.293 6 C -0.379 4.379 7 H 0.052 0.948 8 C -0.212 4.212 9 N -0.553 5.553 10 Si 0.774 3.226 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.212 1.212 14 C 0.076 3.924 15 C -0.014 4.014 16 C -0.246 4.246 17 C -0.145 4.145 18 C -0.103 4.103 19 C -0.152 4.152 20 C -0.113 4.113 21 C -0.145 4.145 22 C -0.039 4.039 23 O -0.120 6.120 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.186 0.814 35 H 0.163 0.837 36 H 0.180 0.820 37 H 0.184 0.816 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.607 8.866 -8.388 16.843 hybrid contribution -0.225 -0.956 0.403 1.062 sum -11.832 7.910 -7.985 16.319 Atomic orbital electron populations 1.22747 0.81919 1.02312 0.99715 1.88123 1.19295 1.29069 1.95176 1.23401 0.96934 0.84041 0.98920 1.21099 0.89617 0.96951 0.90859 1.43792 1.75223 1.02378 1.07888 1.18758 1.36683 0.83007 0.99498 0.94820 1.25455 0.96419 1.00534 0.98806 1.70085 1.34102 1.37259 1.13857 0.85659 0.77907 0.82372 0.76690 1.20914 1.21297 1.21188 1.19725 0.88412 0.97253 0.86979 1.24480 1.00553 0.88487 0.87861 1.22298 0.95678 1.03355 1.03269 1.20296 0.98419 0.97324 0.98423 1.20607 0.91998 1.00049 0.97683 1.21180 1.01145 0.97002 0.95898 1.21315 0.94299 0.95293 1.00364 1.20321 0.95591 1.02477 0.96088 1.20360 0.87970 0.96881 0.98708 1.84012 1.35998 1.50193 1.41827 0.92940 0.95011 0.90296 0.93359 0.93585 0.91353 0.91389 0.93847 0.92485 0.87548 0.81418 0.83720 0.81957 0.81553 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 11.01 113.37 1.25 2.28 16 2 O -0.40 -18.18 10.18 -148.98 -1.52 -19.69 16 3 C 0.05 1.82 6.28 71.98 0.45 2.28 16 4 C 0.14 6.37 5.77 86.38 0.50 6.87 16 5 N -0.57 -28.33 2.39 -706.33 -1.69 -30.02 16 6 C -0.25 -14.16 8.95 84.03 0.75 -13.41 16 7 H 0.03 2.05 7.93 -2.91 -0.02 2.03 16 8 C -0.01 -0.82 4.91 84.86 0.42 -0.40 16 9 N -0.91 -52.87 11.56 21.65 0.25 -52.62 16 10 Si 0.94 47.29 29.61 68.60 2.03 49.32 16 11 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 13 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 14 C 0.20 8.48 6.21 85.63 0.53 9.01 16 15 C 0.04 1.49 6.65 24.72 0.16 1.65 16 16 C -0.23 -7.86 9.07 23.54 0.21 -7.65 16 17 C -0.14 -4.82 6.40 -20.21 -0.13 -4.95 16 18 C -0.09 -2.16 10.05 22.20 0.22 -1.94 16 19 C -0.13 -2.74 9.98 22.04 0.22 -2.52 16 20 C -0.09 -2.04 10.01 22.30 0.22 -1.82 16 21 C -0.13 -3.69 10.07 22.34 0.23 -3.46 16 22 C 0.01 0.29 7.42 22.99 0.17 0.46 16 23 O -0.22 -9.52 10.58 -8.95 -0.09 -9.61 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.76 5.59 -2.39 -0.01 1.75 16 29 H 0.07 3.65 5.56 -2.39 -0.01 3.63 16 30 H 0.07 2.67 7.88 -2.39 -0.02 2.65 16 31 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.06 2.48 8.05 -2.39 -0.02 2.46 16 33 H 0.11 3.69 7.87 -2.39 -0.02 3.67 16 34 H 0.17 4.91 7.84 -2.91 -0.02 4.89 16 35 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 36 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -69.92 322.27 5.24 -64.68 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 1.05 Total: 11.52 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 5.21 Total: -13.58 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -1.44 Total: -82.64 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -1.61 Total: -29.30 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -69.92 5.24 -64.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453604562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.085 kcal (2) G-P(sol) polarization free energy of solvation -69.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds