Wall clock time and date at job start Mon Mar 30 2020 01:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00043 * 2 1 4 4 H 1.09005 * 109.46787 * 23.49883 * 3 2 1 5 5 C 1.50703 * 109.47171 * 143.49983 * 3 2 1 6 6 O 1.21279 * 119.99893 * 5.27458 * 5 3 2 7 7 N 1.34780 * 119.99466 * 185.00188 * 5 3 2 8 8 C 1.39941 * 119.99282 * 174.95869 * 7 5 3 9 9 C 1.39288 * 119.94545 * 146.16818 * 8 7 5 10 10 C 1.38488 * 120.42975 * 179.97438 * 9 8 7 11 11 C 1.37682 * 120.31910 * 0.02582 * 10 9 8 12 12 C 1.40734 * 119.88840 * 359.97438 * 11 10 9 13 13 C 1.41409 * 120.21354 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00178 * 153.18458 * 13 12 11 15 15 C 1.39937 * 119.99523 * 333.18133 * 13 12 11 16 16 N 1.30828 * 120.00066 * 347.76403 * 15 13 12 17 17 Si 1.86798 * 119.99870 * 167.76748 * 15 13 12 18 18 H 1.48503 * 109.47179 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47423 * 119.99674 * 17 15 13 20 20 H 1.48504 * 109.47158 * 239.99912 * 17 15 13 21 21 C 1.38243 * 119.95022 * 325.89029 * 8 7 5 22 22 C 1.52998 * 109.47141 * 263.50476 * 3 2 1 23 23 C 1.52999 * 117.49539 * 9.86444 * 22 3 2 24 24 C 1.53003 * 117.49411 * 301.20616 * 22 3 2 25 25 H 1.09002 * 109.46730 * 63.39692 * 1 2 3 26 26 H 1.09005 * 109.46919 * 183.39057 * 1 2 3 27 27 H 1.08989 * 109.47809 * 303.39667 * 1 2 3 28 28 H 0.96995 * 120.00288 * 354.95035 * 7 5 3 29 29 H 1.08003 * 119.78917 * 359.97438 * 9 8 7 30 30 H 1.08001 * 119.83901 * 180.02562 * 10 9 8 31 31 H 1.08003 * 120.05177 * 179.97438 * 11 10 9 32 32 H 0.97001 * 120.00034 * 179.97438 * 16 15 13 33 33 H 1.08001 * 120.15885 * 359.97438 * 21 8 7 34 34 H 1.08994 * 115.55579 * 155.54028 * 22 3 2 35 35 H 1.08992 * 117.50511 * 0.02562 * 23 22 3 36 36 H 1.09002 * 117.49490 * 145.03042 * 23 22 3 37 37 H 1.08997 * 117.50033 * 214.97979 * 24 22 3 38 38 H 1.09002 * 117.49919 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2970 2.0207 0.4098 5 6 3.2580 1.2998 0.8452 6 8 3.6674 0.2594 1.3150 7 7 3.9218 2.4502 1.0743 8 6 5.0183 2.4639 1.9436 9 6 6.0900 3.3190 1.6977 10 6 7.1800 3.3412 2.5517 11 6 7.2162 2.5169 3.6539 12 6 6.1407 1.6476 3.9152 13 6 6.1706 0.7984 5.0455 14 1 5.2469 0.4696 5.4984 15 6 7.3969 0.3842 5.5772 16 7 8.5010 0.5772 4.9025 17 14 7.4574 -0.4442 7.2503 18 1 6.0829 -0.5432 7.8037 19 1 8.0335 -1.8056 7.1082 20 1 8.3041 0.3580 8.1696 21 6 5.0337 1.6329 3.0483 22 6 2.3668 1.7050 -1.4332 23 6 1.8536 0.8112 -2.5641 24 6 3.3396 0.8038 -2.1965 25 1 -0.3633 0.4602 -0.9189 26 1 -0.3633 -1.0259 0.0608 27 1 -0.3634 0.5656 0.8579 28 1 3.6396 3.2685 0.6365 29 1 6.0708 3.9690 0.8354 30 1 8.0055 4.0083 2.3521 31 1 8.0686 2.5374 4.3168 32 1 9.3512 0.2904 5.2712 33 1 4.2011 0.9730 3.2425 34 1 2.4192 2.7769 -1.6233 35 1 1.2617 -0.0611 -2.2871 36 1 1.5688 1.2953 -3.4983 37 1 4.0317 1.2829 -2.8889 38 1 3.7259 -0.0733 -1.6774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456751575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:00 Heat of formation + Delta-G solvation = -30.356912 kcal Electronic energy + Delta-G solvation = -20931.908981 eV Core-core repulsion = 17740.285744 eV Total energy + Delta-G solvation = -3191.623238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.15168 -38.37240 -36.85407 -35.94098 -34.36220 -32.97251 -29.78268 -29.60228 -27.59776 -26.03187 -25.24709 -22.53900 -22.04134 -20.95264 -20.71000 -19.37820 -17.81014 -17.02093 -16.86979 -16.23115 -15.37366 -14.99053 -14.75160 -14.59197 -14.43611 -14.14822 -13.46688 -13.12075 -12.84592 -12.69679 -12.16737 -11.96629 -11.58667 -11.47786 -11.42928 -11.27809 -11.08752 -10.70092 -10.53464 -10.47730 -10.45227 -10.01551 -9.86737 -9.68948 -9.34370 -9.04357 -8.75286 -7.39281 -6.85771 -6.63681 -4.30656 2.63360 2.86181 3.10209 3.12986 3.19322 3.22744 3.42370 3.63496 4.00826 4.17077 4.52006 4.69892 4.79311 4.83930 5.08311 5.14265 5.23277 5.29094 5.32678 5.54553 5.61060 5.75788 5.80678 6.03507 6.19381 6.27101 6.41894 6.79684 6.92350 7.06635 7.10139 7.12368 7.31548 7.61243 7.76397 8.01213 8.13294 8.21509 8.31949 8.68107 8.78549 8.98802 9.02554 10.29371 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024091 B = 0.004476 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.964262 B = 6254.587560 C = 6990.915349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.103 3.897 4 H 0.089 0.911 5 C 0.506 3.494 6 O -0.493 6.493 7 N -0.665 5.665 8 C 0.152 3.848 9 C -0.259 4.259 10 C -0.094 4.094 11 C -0.169 4.169 12 C 0.118 3.882 13 C -0.456 4.456 14 H 0.077 0.923 15 C 0.073 3.927 16 N -0.799 5.799 17 Si 0.911 3.089 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.273 1.273 21 C -0.209 4.209 22 C -0.185 4.185 23 C -0.166 4.166 24 C -0.164 4.164 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.397 0.603 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.278 0.722 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.937 3.882 -10.257 16.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.270 6.270 3 C 0.041 3.959 4 H 0.107 0.893 5 C 0.291 3.709 6 O -0.365 6.365 7 N -0.311 5.311 8 C 0.061 3.939 9 C -0.281 4.281 10 C -0.113 4.113 11 C -0.189 4.189 12 C 0.115 3.885 13 C -0.486 4.486 14 H 0.095 0.905 15 C -0.143 4.143 16 N -0.425 5.425 17 Si 0.735 3.265 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.198 1.198 21 C -0.231 4.231 22 C -0.204 4.204 23 C -0.203 4.203 24 C -0.201 4.201 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.230 0.770 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.140 0.860 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.332 2.848 -9.900 15.315 hybrid contribution -0.186 0.301 0.352 0.500 sum -11.519 3.149 -9.547 15.289 Atomic orbital electron populations 1.22926 0.80915 1.03112 1.00043 1.88044 1.19416 1.25042 1.94522 1.21420 0.94341 0.86693 0.93421 0.89316 1.20264 0.85047 0.84250 0.81340 1.90789 1.65958 1.30888 1.48909 1.43341 1.31021 1.10397 1.46302 1.17411 0.86769 0.99536 0.90198 1.20041 0.96144 1.08121 1.03744 1.20480 0.96001 0.98982 0.95831 1.21418 1.01304 0.97278 0.98908 1.17507 0.90229 0.89814 0.90929 1.19594 0.93125 1.25431 1.10479 0.90518 1.25889 0.95151 0.94787 0.98483 1.69818 0.99357 1.37264 1.36094 0.86224 0.79445 0.79061 0.81742 1.18473 1.19992 1.19810 1.20960 1.02358 1.04452 0.95321 1.22713 1.07834 0.97951 0.91856 1.22945 0.97885 1.01966 0.97476 1.22941 0.92400 1.02136 1.02592 0.93759 0.89277 0.93806 0.76961 0.89312 0.89046 0.85993 0.91079 0.87690 0.86617 0.87920 0.88937 0.88703 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.19 101.05 1.03 1.29 16 2 O -0.35 -5.19 8.56 -55.09 -0.47 -5.66 16 3 C 0.10 1.41 2.98 -27.88 -0.08 1.32 16 4 H 0.09 0.96 7.67 -51.93 -0.40 0.56 16 5 C 0.51 9.53 6.59 -10.98 -0.07 9.46 16 6 O -0.49 -11.99 14.24 -14.30 -0.20 -12.19 16 7 N -0.67 -12.04 5.30 -9.91 -0.05 -12.10 16 8 C 0.15 3.51 6.26 -83.76 -0.52 2.98 16 9 C -0.26 -5.77 9.97 -39.10 -0.39 -6.16 16 10 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 11 C -0.17 -4.51 8.67 -38.84 -0.34 -4.85 16 12 C 0.12 3.31 5.57 -106.85 -0.59 2.72 16 13 C -0.46 -12.78 9.07 -37.74 -0.34 -13.12 16 14 H 0.08 2.10 7.87 -52.49 -0.41 1.68 16 15 C 0.07 1.92 5.24 -17.34 -0.09 1.83 16 16 N -0.80 -21.46 10.79 55.55 0.60 -20.86 16 17 Si 0.91 19.52 29.58 -169.99 -5.03 14.49 16 18 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 C -0.21 -5.55 8.39 -38.68 -0.32 -5.88 16 22 C -0.18 -2.07 5.78 -90.62 -0.52 -2.60 16 23 C -0.17 -1.68 9.52 -26.69 -0.25 -1.94 16 24 C -0.16 -2.05 9.83 -26.69 -0.26 -2.31 16 25 H 0.04 0.35 7.43 -51.93 -0.39 -0.04 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.40 8.03 -51.93 -0.42 -0.02 16 28 H 0.40 5.44 8.80 -40.82 -0.36 5.08 16 29 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.12 3.33 6.12 -52.48 -0.32 3.01 16 32 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 33 H 0.11 2.89 6.46 -52.49 -0.34 2.55 16 34 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.10 1.09 6.22 -51.93 -0.32 0.77 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 321.57 15.07 4.85 4.85 Total: -1.00 -32.77 321.57 -8.53 -41.30 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.05 Total: 10.03 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -3.17 Total: -19.85 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.55 Total: -32.96 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.68 Total: -17.85 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.77 -8.53 -41.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456751575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.939 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds