Wall clock time and date at job start Mon Mar 30 2020 01:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00043 * 2 1 4 4 H 1.09005 * 109.46787 * 23.49883 * 3 2 1 5 5 C 1.50703 * 109.47171 * 143.49983 * 3 2 1 6 6 O 1.21279 * 119.99893 * 5.27458 * 5 3 2 7 7 N 1.34780 * 119.99466 * 185.00188 * 5 3 2 8 8 C 1.39941 * 119.99282 * 174.95869 * 7 5 3 9 9 C 1.39288 * 119.94545 * 146.16818 * 8 7 5 10 10 C 1.38488 * 120.42975 * 179.97438 * 9 8 7 11 11 C 1.37682 * 120.31910 * 0.02582 * 10 9 8 12 12 C 1.40734 * 119.88840 * 359.97438 * 11 10 9 13 13 C 1.41409 * 120.21354 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00178 * 153.18458 * 13 12 11 15 15 C 1.39937 * 119.99523 * 333.18133 * 13 12 11 16 16 N 1.30828 * 120.00066 * 347.76403 * 15 13 12 17 17 Si 1.86798 * 119.99870 * 167.76748 * 15 13 12 18 18 H 1.48503 * 109.47179 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47423 * 119.99674 * 17 15 13 20 20 H 1.48504 * 109.47158 * 239.99912 * 17 15 13 21 21 C 1.38243 * 119.95022 * 325.89029 * 8 7 5 22 22 C 1.52998 * 109.47141 * 263.50476 * 3 2 1 23 23 C 1.52999 * 117.49539 * 9.86444 * 22 3 2 24 24 C 1.53003 * 117.49411 * 301.20616 * 22 3 2 25 25 H 1.09002 * 109.46730 * 63.39692 * 1 2 3 26 26 H 1.09005 * 109.46919 * 183.39057 * 1 2 3 27 27 H 1.08989 * 109.47809 * 303.39667 * 1 2 3 28 28 H 0.96995 * 120.00288 * 354.95035 * 7 5 3 29 29 H 1.08003 * 119.78917 * 359.97438 * 9 8 7 30 30 H 1.08001 * 119.83901 * 180.02562 * 10 9 8 31 31 H 1.08003 * 120.05177 * 179.97438 * 11 10 9 32 32 H 0.97001 * 120.00034 * 179.97438 * 16 15 13 33 33 H 1.08001 * 120.15885 * 359.97438 * 21 8 7 34 34 H 1.08994 * 115.55579 * 155.54028 * 22 3 2 35 35 H 1.08992 * 117.50511 * 0.02562 * 23 22 3 36 36 H 1.09002 * 117.49490 * 145.03042 * 23 22 3 37 37 H 1.08997 * 117.50033 * 214.97979 * 24 22 3 38 38 H 1.09002 * 117.49919 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2970 2.0207 0.4098 5 6 3.2580 1.2998 0.8452 6 8 3.6674 0.2594 1.3150 7 7 3.9218 2.4502 1.0743 8 6 5.0183 2.4639 1.9436 9 6 6.0900 3.3190 1.6977 10 6 7.1800 3.3412 2.5517 11 6 7.2162 2.5169 3.6539 12 6 6.1407 1.6476 3.9152 13 6 6.1706 0.7984 5.0455 14 1 5.2469 0.4696 5.4984 15 6 7.3969 0.3842 5.5772 16 7 8.5010 0.5772 4.9025 17 14 7.4574 -0.4442 7.2503 18 1 6.0829 -0.5432 7.8037 19 1 8.0335 -1.8056 7.1082 20 1 8.3041 0.3580 8.1696 21 6 5.0337 1.6329 3.0483 22 6 2.3668 1.7050 -1.4332 23 6 1.8536 0.8112 -2.5641 24 6 3.3396 0.8038 -2.1965 25 1 -0.3633 0.4602 -0.9189 26 1 -0.3633 -1.0259 0.0608 27 1 -0.3634 0.5656 0.8579 28 1 3.6396 3.2685 0.6365 29 1 6.0708 3.9690 0.8354 30 1 8.0055 4.0083 2.3521 31 1 8.0686 2.5374 4.3168 32 1 9.3512 0.2904 5.2712 33 1 4.2011 0.9730 3.2425 34 1 2.4192 2.7769 -1.6233 35 1 1.2617 -0.0611 -2.2871 36 1 1.5688 1.2953 -3.4983 37 1 4.0317 1.2829 -2.8889 38 1 3.7259 -0.0733 -1.6774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456751575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:00 Heat of formation + Delta-G solvation = -51.095604 kcal Electronic energy + Delta-G solvation = -20932.808278 eV Core-core repulsion = 17740.285744 eV Total energy + Delta-G solvation = -3192.522535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55419 -39.75235 -38.56483 -36.88308 -36.16594 -34.82266 -31.76080 -31.01887 -29.04822 -27.29536 -26.94886 -23.80077 -23.20170 -22.74687 -22.15738 -20.84777 -19.60270 -18.33841 -18.02505 -17.56019 -17.11448 -16.58296 -16.45065 -15.84625 -15.79942 -15.45236 -14.88045 -14.78252 -14.46591 -13.96916 -13.79512 -13.58311 -13.14418 -12.87974 -12.82756 -12.58046 -12.37184 -12.27934 -12.21175 -12.02748 -11.63105 -11.52761 -11.34814 -11.19444 -10.85347 -10.79558 -10.33816 -9.38370 -8.73363 -8.59622 -6.39621 0.85291 0.97887 1.34962 1.46124 1.50837 1.71329 1.93437 2.21044 2.70825 2.74568 3.07598 3.57798 3.71666 3.75161 3.87425 4.21423 4.22056 4.33476 4.46199 4.51873 4.57012 4.62444 4.79368 4.84779 4.97933 5.03969 5.08942 5.11609 5.17530 5.21971 5.30094 5.33014 5.73779 5.83971 6.05179 6.08477 6.12318 6.34292 6.64860 6.68997 6.93135 6.99833 7.32212 8.35405 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024091 B = 0.004476 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.964262 B = 6254.587560 C = 6990.915349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.390 6.390 3 C 0.111 3.889 4 H 0.126 0.874 5 C 0.501 3.499 6 O -0.559 6.559 7 N -0.650 5.650 8 C 0.158 3.842 9 C -0.245 4.245 10 C -0.093 4.093 11 C -0.194 4.194 12 C 0.086 3.914 13 C -0.502 4.502 14 H 0.063 0.937 15 C 0.033 3.967 16 N -0.830 5.830 17 Si 0.986 3.014 18 H -0.263 1.263 19 H -0.266 1.266 20 H -0.255 1.255 21 C -0.237 4.237 22 C -0.179 4.179 23 C -0.142 4.142 24 C -0.191 4.191 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.423 0.577 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.108 0.892 32 H 0.288 0.712 33 H 0.080 0.920 34 H 0.153 0.847 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.151 5.860 -12.114 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.308 6.308 3 C 0.049 3.951 4 H 0.143 0.857 5 C 0.288 3.712 6 O -0.435 6.435 7 N -0.297 5.297 8 C 0.064 3.936 9 C -0.266 4.266 10 C -0.111 4.111 11 C -0.214 4.214 12 C 0.084 3.916 13 C -0.532 4.532 14 H 0.082 0.918 15 C -0.181 4.181 16 N -0.457 5.457 17 Si 0.806 3.194 18 H -0.187 1.187 19 H -0.191 1.191 20 H -0.180 1.180 21 C -0.259 4.259 22 C -0.197 4.197 23 C -0.178 4.178 24 C -0.228 4.228 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.261 0.739 29 H 0.153 0.847 30 H 0.143 0.857 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.170 0.830 35 H 0.114 0.886 36 H 0.142 0.858 37 H 0.127 0.873 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.581 4.880 -11.803 17.928 hybrid contribution 0.122 -0.286 0.785 0.845 sum -12.459 4.594 -11.017 17.254 Atomic orbital electron populations 1.23164 0.78499 1.04128 1.01763 1.88014 1.22106 1.25969 1.94736 1.21460 0.92125 0.87402 0.94090 0.85661 1.21424 0.86065 0.83125 0.80558 1.90766 1.67924 1.33292 1.51537 1.43213 1.29606 1.11726 1.45190 1.17508 0.88416 0.98105 0.89526 1.20501 0.94591 1.07346 1.04190 1.20877 0.97407 0.98258 0.94590 1.21383 1.00787 0.98733 1.00536 1.17853 0.91438 0.90663 0.91672 1.19794 0.93716 1.27533 1.12160 0.91835 1.26744 0.94131 0.95002 1.02217 1.69861 1.00026 1.38015 1.37751 0.85115 0.79446 0.78232 0.76582 1.18668 1.19128 1.17959 1.20909 1.01797 1.05908 0.97293 1.22860 1.06927 0.99694 0.90220 1.23023 0.95357 1.01354 0.98086 1.22873 0.94376 1.01627 1.03929 0.91049 0.88730 0.93014 0.73881 0.84692 0.85716 0.87450 0.90155 0.90201 0.82991 0.88626 0.85772 0.87300 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.19 113.37 1.16 1.51 16 2 O -0.39 -11.18 8.56 -130.00 -1.11 -12.29 16 3 C 0.11 2.79 2.98 29.85 0.09 2.88 16 4 H 0.13 2.23 7.67 -2.38 -0.02 2.21 16 5 C 0.50 18.81 6.59 87.66 0.58 19.38 16 6 O -0.56 -28.59 14.24 15.96 0.23 -28.36 16 7 N -0.65 -22.57 5.30 -303.65 -1.61 -24.18 16 8 C 0.16 7.22 6.26 38.10 0.24 7.46 16 9 C -0.25 -10.34 9.97 22.58 0.23 -10.11 16 10 C -0.09 -4.27 10.02 22.20 0.22 -4.05 16 11 C -0.19 -10.68 8.67 22.75 0.20 -10.48 16 12 C 0.09 5.11 5.57 -21.31 -0.12 4.99 16 13 C -0.50 -29.96 9.07 23.46 0.21 -29.75 16 14 H 0.06 3.77 7.87 -2.91 -0.02 3.75 16 15 C 0.03 1.77 5.24 85.25 0.45 2.22 16 16 N -0.83 -46.13 10.79 21.82 0.24 -45.89 16 17 Si 0.99 41.31 29.58 68.60 2.03 43.34 16 18 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 21 C -0.24 -13.23 8.39 22.85 0.19 -13.03 16 22 C -0.18 -3.39 5.78 -10.79 -0.06 -3.45 16 23 C -0.14 -2.40 9.52 30.62 0.29 -2.10 16 24 C -0.19 -4.50 9.83 30.62 0.30 -4.20 16 25 H 0.07 0.87 7.43 -2.39 -0.02 0.86 16 26 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.05 0.83 8.03 -2.39 -0.02 0.81 16 28 H 0.42 10.06 8.80 -92.71 -0.82 9.25 16 29 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 30 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 31 H 0.11 6.11 6.12 -2.91 -0.02 6.09 16 32 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 33 H 0.08 4.75 6.46 -2.91 -0.02 4.73 16 34 H 0.15 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.10 1.79 6.22 -2.39 -0.01 1.77 16 36 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.11 2.19 8.14 -2.39 -0.02 2.18 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -78.59 321.57 4.00 -74.59 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: 0.26 Total: 31.54 kcal Atomic # 6 Polarization: -42.70 SS G_CDS: 3.97 Total: -38.73 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -1.37 Total: -70.08 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.89 Total: -40.65 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -78.59 4.00 -74.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456751575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.492 kcal (2) G-P(sol) polarization free energy of solvation -78.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds