Wall clock time and date at job start Mon Mar 30 2020 01:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00410 * 2 1 4 4 H 1.09002 * 109.46833 * 29.99913 * 3 2 1 5 5 C 1.50701 * 109.47324 * 270.00274 * 3 2 1 6 6 O 1.21288 * 119.99634 * 354.99410 * 5 3 2 7 7 N 1.34776 * 120.00366 * 174.99709 * 5 3 2 8 8 C 1.39931 * 120.00115 * 174.88904 * 7 5 3 9 9 C 1.39292 * 119.95032 * 145.78612 * 8 7 5 10 10 C 1.38483 * 120.43374 * 179.97438 * 9 8 7 11 11 C 1.37689 * 120.31942 * 359.97438 * 10 9 8 12 12 C 1.40740 * 119.88165 * 0.02562 * 11 10 9 13 13 C 1.41410 * 120.20590 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00230 * 205.18083 * 13 12 11 15 15 C 1.39934 * 120.00262 * 25.18003 * 13 12 11 16 16 N 1.30837 * 119.99693 * 16.79105 * 15 13 12 17 17 Si 1.86795 * 120.00254 * 196.79465 * 15 13 12 18 18 H 1.48497 * 109.47516 * 59.99648 * 17 15 13 19 19 H 1.48503 * 109.47401 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47090 * 299.99753 * 17 15 13 21 21 C 1.38247 * 119.94633 * 325.50831 * 8 7 5 22 22 C 1.52995 * 109.47392 * 149.99855 * 3 2 1 23 23 C 1.53000 * 117.49960 * 8.75315 * 22 3 2 24 24 C 1.52996 * 117.50059 * 300.09073 * 22 3 2 25 25 H 1.09005 * 109.46994 * 299.99825 * 1 2 3 26 26 H 1.09006 * 109.46963 * 59.99910 * 1 2 3 27 27 H 1.08999 * 109.47306 * 180.02562 * 1 2 3 28 28 H 0.96997 * 119.99405 * 354.88943 * 7 5 3 29 29 H 1.08004 * 119.78089 * 359.97438 * 9 8 7 30 30 H 1.07999 * 119.84021 * 179.97438 * 10 9 8 31 31 H 1.07999 * 120.05704 * 180.02562 * 11 10 9 32 32 H 0.96996 * 119.99313 * 180.02562 * 16 15 13 33 33 H 1.07999 * 120.16148 * 0.02562 * 21 8 7 34 34 H 1.09006 * 115.55380 * 154.42043 * 22 3 2 35 35 H 1.09004 * 117.49589 * 359.97438 * 23 22 3 36 36 H 1.08996 * 117.49986 * 145.02320 * 23 22 3 37 37 H 1.09009 * 117.50084 * 214.97870 * 24 22 3 38 38 H 1.09004 * 117.50020 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2146 1.7644 -1.4208 6 8 1.9791 1.0105 -2.3413 7 7 2.6589 3.0124 -1.6686 8 6 2.9506 3.4038 -2.9800 9 6 2.7156 4.7164 -3.3826 10 6 3.0011 5.1146 -4.6778 11 6 3.5214 4.2164 -5.5825 12 6 3.7641 2.8868 -5.1900 13 6 4.2978 1.9585 -6.1136 14 1 4.1161 0.9019 -5.9835 15 6 5.0613 2.4089 -7.1964 16 7 5.5588 3.6190 -7.1877 17 14 5.3704 1.2825 -8.6541 18 1 4.0732 0.8970 -9.2656 19 1 6.2002 1.9920 -9.6608 20 1 6.0830 0.0632 -8.1952 21 6 3.4770 2.4885 -3.8724 22 6 3.3589 1.2632 0.7212 23 6 3.9153 -0.1111 1.0990 24 6 3.3638 0.8166 2.1846 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.7765 3.6393 -0.9378 29 1 2.3081 5.4282 -2.6799 30 1 2.8148 6.1347 -4.9798 31 1 3.7429 4.5317 -6.5914 32 1 6.0877 3.9312 -7.9383 33 1 3.6633 1.4716 -3.5601 34 1 4.0736 2.0320 0.4273 35 1 3.3202 -0.9851 0.8341 36 1 4.9959 -0.2463 1.0541 37 1 4.0819 1.2914 2.8533 38 1 2.4061 0.5533 2.6337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456751576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:03 Heat of formation + Delta-G solvation = -52.777960 kcal Electronic energy + Delta-G solvation = -20889.019283 eV Core-core repulsion = 17696.423795 eV Total energy + Delta-G solvation = -3192.595487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.55776 -39.66831 -38.49625 -37.10866 -36.16291 -34.84562 -31.77374 -30.99305 -29.02620 -27.31221 -27.03394 -23.61234 -23.17585 -22.78998 -22.15822 -20.96056 -19.63599 -18.63398 -17.78951 -17.34209 -17.16212 -16.57310 -16.47038 -16.06230 -15.75828 -15.41155 -14.89439 -14.75282 -14.47023 -14.13422 -13.82080 -13.55393 -13.07033 -12.95914 -12.79678 -12.55359 -12.44892 -12.26035 -12.20520 -12.06652 -11.67708 -11.47874 -11.35403 -11.14397 -11.07836 -10.85311 -10.20876 -9.41907 -8.78112 -8.62690 -6.39422 0.82049 0.97982 1.34378 1.45307 1.48176 1.72028 2.04935 2.19721 2.67890 2.73086 2.92976 3.55889 3.68537 3.80382 3.89639 4.13902 4.22512 4.38418 4.44826 4.49312 4.53906 4.61499 4.80052 4.85008 4.98961 5.02360 5.07324 5.09884 5.21120 5.22635 5.30648 5.35245 5.72211 5.83071 5.98921 6.06037 6.09132 6.32453 6.62185 6.66713 6.91352 6.98742 7.29083 8.31226 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.004460 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.226384 B = 6277.088603 C = 6731.862152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.376 6.376 3 C 0.118 3.882 4 H 0.126 0.874 5 C 0.479 3.521 6 O -0.559 6.559 7 N -0.653 5.653 8 C 0.157 3.843 9 C -0.249 4.249 10 C -0.091 4.091 11 C -0.197 4.197 12 C 0.089 3.911 13 C -0.505 4.505 14 H 0.060 0.940 15 C 0.040 3.960 16 N -0.821 5.821 17 Si 0.981 3.019 18 H -0.263 1.263 19 H -0.258 1.258 20 H -0.264 1.264 21 C -0.238 4.238 22 C -0.177 4.177 23 C -0.180 4.180 24 C -0.133 4.133 25 H 0.075 0.925 26 H 0.025 0.975 27 H 0.100 0.900 28 H 0.422 0.578 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.290 0.710 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.301 -0.325 16.686 17.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.293 6.293 3 C 0.056 3.944 4 H 0.144 0.856 5 C 0.267 3.733 6 O -0.436 6.436 7 N -0.301 5.301 8 C 0.064 3.936 9 C -0.270 4.270 10 C -0.109 4.109 11 C -0.217 4.217 12 C 0.086 3.914 13 C -0.535 4.535 14 H 0.078 0.922 15 C -0.175 4.175 16 N -0.446 5.446 17 Si 0.801 3.199 18 H -0.187 1.187 19 H -0.181 1.181 20 H -0.188 1.188 21 C -0.259 4.259 22 C -0.195 4.195 23 C -0.217 4.217 24 C -0.169 4.169 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.119 0.881 28 H 0.260 0.740 29 H 0.153 0.847 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.137 0.863 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.217 -0.918 15.975 16.831 hybrid contribution 0.185 -0.139 -0.893 0.922 sum -5.032 -1.057 15.083 15.935 Atomic orbital electron populations 1.23045 0.79364 1.04265 1.00587 1.87962 1.21558 1.25611 1.94153 1.21487 0.96979 0.87079 0.88836 0.85623 1.22310 0.76128 0.81383 0.93475 1.90743 1.50301 1.54655 1.47914 1.43388 1.64908 1.14287 1.07516 1.17541 0.97490 0.94012 0.84586 1.20493 1.14145 0.94741 0.97664 1.20858 0.98048 0.98661 0.93370 1.21310 1.06177 0.94447 0.99800 1.17828 0.89003 0.93527 0.91043 1.19709 1.30421 0.94334 1.09003 0.92207 1.26673 0.92635 0.97193 1.01026 1.69847 1.24600 1.18914 1.31271 0.85290 0.79230 0.78633 0.76745 1.18745 1.18141 1.18826 1.20906 1.11842 0.98622 0.94572 1.22309 0.95902 1.01470 0.99867 1.22915 1.00916 0.93753 1.04076 1.23062 1.03774 1.01036 0.89054 0.90631 0.95618 0.88129 0.73986 0.84745 0.85709 0.87716 0.89913 0.90376 0.86011 0.89075 0.88522 0.86285 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.81 113.37 1.23 1.72 16 2 O -0.38 -10.45 8.24 -129.99 -1.07 -11.53 16 3 C 0.12 2.96 2.87 29.85 0.09 3.05 16 4 H 0.13 2.16 7.79 -2.39 -0.02 2.14 16 5 C 0.48 17.59 6.85 87.66 0.60 18.19 16 6 O -0.56 -27.39 14.26 15.94 0.23 -27.16 16 7 N -0.65 -22.67 5.23 -303.65 -1.59 -24.25 16 8 C 0.16 7.18 6.25 38.10 0.24 7.41 16 9 C -0.25 -10.50 9.97 22.58 0.23 -10.27 16 10 C -0.09 -4.17 10.02 22.20 0.22 -3.94 16 11 C -0.20 -10.79 8.69 22.75 0.20 -10.60 16 12 C 0.09 5.24 5.57 -21.31 -0.12 5.12 16 13 C -0.51 -30.11 9.05 23.46 0.21 -29.90 16 14 H 0.06 3.61 7.90 -2.91 -0.02 3.58 16 15 C 0.04 2.14 5.16 85.25 0.44 2.58 16 16 N -0.82 -44.36 10.94 21.82 0.24 -44.12 16 17 Si 0.98 40.85 29.59 68.60 2.03 42.88 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 20 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 21 C -0.24 -13.25 8.39 22.85 0.19 -13.06 16 22 C -0.18 -3.83 5.67 -10.80 -0.06 -3.89 16 23 C -0.18 -3.98 9.88 30.62 0.30 -3.67 16 24 C -0.13 -2.01 10.19 30.62 0.31 -1.70 16 25 H 0.08 1.06 8.09 -2.38 -0.02 1.04 16 26 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.42 10.29 8.82 -92.71 -0.82 9.47 16 29 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 30 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16 31 H 0.10 5.91 6.16 -2.91 -0.02 5.89 16 32 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 33 H 0.08 4.68 6.48 -2.91 -0.02 4.66 16 34 H 0.12 2.58 8.03 -2.38 -0.02 2.57 16 35 H 0.09 2.33 7.06 -2.38 -0.02 2.31 16 36 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -75.30 324.40 4.17 -71.14 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.26 Total: 32.01 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 4.07 Total: -38.97 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -1.35 Total: -68.37 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -0.84 Total: -38.69 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -75.30 4.17 -71.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456751576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.359 kcal (2) G-P(sol) polarization free energy of solvation -75.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds