Wall clock time and date at job start Mon Mar 30 2020 01:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99827 * 2 1 4 4 C 1.52998 * 109.47049 * 180.02562 * 3 2 1 5 5 C 1.50701 * 115.55942 * 319.89280 * 4 3 2 6 6 O 1.21286 * 120.00097 * 223.46071 * 5 4 3 7 7 N 1.34775 * 120.00123 * 43.46921 * 5 4 3 8 8 C 1.39935 * 120.00134 * 184.66685 * 7 5 4 9 9 C 1.39291 * 119.94889 * 143.50397 * 8 7 5 10 10 C 1.38488 * 120.42859 * 179.97438 * 9 8 7 11 11 C 1.37681 * 120.31959 * 359.97438 * 10 9 8 12 12 C 1.40734 * 119.88739 * 0.02562 * 11 10 9 13 13 C 1.41411 * 120.20973 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00211 * 202.11578 * 13 12 11 15 15 C 1.39934 * 119.99980 * 22.12410 * 13 12 11 16 16 N 1.30822 * 120.00135 * 17.47085 * 15 13 12 17 17 Si 1.86802 * 119.99836 * 197.47942 * 15 13 12 18 18 H 1.48499 * 109.47457 * 89.99381 * 17 15 13 19 19 H 1.48497 * 109.46935 * 209.99768 * 17 15 13 20 20 H 1.48499 * 109.47139 * 329.99328 * 17 15 13 21 21 C 1.38243 * 119.94562 * 323.21849 * 8 7 5 22 22 C 1.53000 * 117.50202 * 174.20913 * 4 3 2 23 23 C 1.52997 * 60.03295 * 252.49538 * 22 4 3 24 24 H 1.08994 * 109.46987 * 299.99588 * 1 2 3 25 25 H 1.08998 * 109.47288 * 60.00093 * 1 2 3 26 26 H 1.09003 * 109.46726 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47140 * 59.99739 * 3 2 1 28 28 H 1.09007 * 109.47052 * 299.99896 * 3 2 1 29 29 H 0.96998 * 119.99693 * 4.65813 * 7 5 4 30 30 H 1.08000 * 119.78560 * 359.97438 * 9 8 7 31 31 H 1.07996 * 119.83516 * 180.02562 * 10 9 8 32 32 H 1.08001 * 120.05429 * 179.97438 * 11 10 9 33 33 H 0.96999 * 120.00143 * 180.02562 * 16 15 13 34 34 H 1.08000 * 120.16000 * 0.02562 * 21 8 7 35 35 H 1.09008 * 117.49688 * 359.97438 * 22 4 3 36 36 H 1.08995 * 117.50473 * 144.99378 * 22 4 3 37 37 H 1.08997 * 117.50048 * 107.49634 * 23 22 4 38 38 H 1.08994 * 117.50214 * 252.52207 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1019 0.0966 0.8748 6 8 5.0722 0.3191 1.5675 7 7 3.5303 -1.1239 0.8877 8 6 3.9944 -2.1046 1.7715 9 6 3.0957 -2.9892 2.3630 10 6 3.5442 -3.9638 3.2387 11 6 4.8849 -4.0692 3.5339 12 6 5.8047 -3.1823 2.9439 13 6 7.1831 -3.2841 3.2427 14 1 7.8311 -2.4320 3.0993 15 6 7.7076 -4.4888 3.7241 16 7 7.0320 -5.5999 3.5810 17 14 9.3724 -4.5104 4.5711 18 1 9.1889 -4.2952 6.0289 19 1 10.0268 -5.8237 4.3431 20 1 10.2250 -3.4294 4.0146 21 6 5.3450 -2.1976 2.0517 22 6 4.3463 2.4749 -0.1377 23 6 4.2687 1.4930 -1.3085 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8463 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 2.7971 -1.3225 0.2845 30 1 2.0422 -2.9146 2.1372 31 1 2.8390 -4.6450 3.6915 32 1 5.2299 -4.8306 4.2177 33 1 7.3954 -6.4349 3.9150 34 1 6.0431 -1.5148 1.5904 35 1 3.7930 3.4098 -0.2278 36 1 5.2891 2.5369 0.4056 37 1 3.6645 1.7819 -2.1684 38 1 5.1604 0.9087 -1.5352 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456752158.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:37 Heat of formation + Delta-G solvation = -30.146661 kcal Electronic energy + Delta-G solvation = -21022.411990 eV Core-core repulsion = 17830.797870 eV Total energy + Delta-G solvation = -3191.614120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.10309 -38.08225 -37.24273 -36.00560 -34.23658 -32.86052 -29.72063 -28.77456 -27.79326 -25.81105 -25.20204 -23.42517 -22.53843 -20.95262 -20.41524 -19.03706 -17.58359 -17.06498 -16.25457 -15.94422 -15.53238 -15.15556 -15.00621 -14.50548 -14.30430 -14.08095 -13.66184 -12.95686 -12.86209 -12.70270 -12.26145 -11.98965 -11.59764 -11.55137 -11.47380 -11.09772 -11.04084 -10.80322 -10.67625 -10.41567 -10.35932 -10.06321 -9.78505 -9.56147 -9.21986 -8.91225 -8.75781 -7.36624 -6.79619 -6.62165 -4.24608 2.65525 2.89990 3.13583 3.17508 3.18941 3.29560 3.47844 3.82055 3.90498 4.02176 4.62830 4.71374 4.80092 4.87211 4.97560 5.14990 5.18218 5.22630 5.46187 5.51479 5.52878 5.77393 5.84242 5.89792 6.08426 6.38068 6.54073 6.90799 7.00333 7.14302 7.18430 7.23449 7.37849 7.72522 7.88276 8.11357 8.20616 8.34966 8.44924 8.74725 8.94650 9.05455 9.11073 10.28103 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.004689 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.891589 B = 5969.943337 C = 6911.279781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.106 3.894 4 C -0.165 4.165 5 C 0.543 3.457 6 O -0.526 6.526 7 N -0.648 5.648 8 C 0.150 3.850 9 C -0.259 4.259 10 C -0.094 4.094 11 C -0.177 4.177 12 C 0.116 3.884 13 C -0.456 4.456 14 H 0.077 0.923 15 C 0.075 3.925 16 N -0.795 5.795 17 Si 0.908 3.092 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.262 1.262 21 C -0.211 4.211 22 C -0.136 4.136 23 C -0.150 4.150 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.408 0.592 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.279 0.721 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 10.701 -8.105 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C 0.029 3.971 4 C -0.168 4.168 5 C 0.329 3.671 6 O -0.402 6.402 7 N -0.295 5.295 8 C 0.058 3.942 9 C -0.281 4.281 10 C -0.113 4.113 11 C -0.197 4.197 12 C 0.113 3.887 13 C -0.486 4.486 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.421 5.421 17 Si 0.733 3.267 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.233 4.233 22 C -0.173 4.173 23 C -0.188 4.188 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.248 0.752 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.320 10.455 -7.595 15.933 hybrid contribution -0.021 -0.030 0.072 0.081 sum -9.341 10.424 -7.523 15.891 Atomic orbital electron populations 1.22755 0.80341 1.03208 0.99892 1.87645 1.20182 1.27601 1.95425 1.21933 0.89536 0.84952 1.00685 1.21518 0.93448 0.99513 1.02333 1.19211 0.83397 0.82430 0.82076 1.90725 1.25921 1.81462 1.42070 1.43589 1.36619 1.10651 1.38643 1.17513 0.93046 0.90083 0.93544 1.20061 0.96251 1.03523 1.08221 1.20464 0.95724 0.97073 0.98051 1.21427 0.91331 1.03244 1.03668 1.17517 0.93413 0.89652 0.88151 1.19602 0.93860 0.97351 1.37788 0.90438 1.25905 0.99477 0.94931 0.93859 1.69834 1.38260 0.99148 1.34840 0.86312 0.81689 0.78351 0.80352 1.19311 1.20398 1.18621 1.21072 0.92652 1.04474 1.05080 1.23004 1.01854 0.91613 1.00848 1.23130 1.02301 1.02511 0.90816 0.93885 0.94044 0.89242 0.92305 0.92300 0.75208 0.89398 0.89216 0.85960 0.91046 0.87402 0.87986 0.86819 0.87871 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.79 7.38 -35.23 -0.26 -5.05 16 3 C 0.11 1.17 6.00 37.16 0.22 1.39 16 4 C -0.16 -2.27 2.47 -155.62 -0.38 -2.65 16 5 C 0.54 10.68 7.12 -10.99 -0.08 10.60 16 6 O -0.53 -12.48 13.84 5.55 0.08 -12.40 16 7 N -0.65 -13.14 4.88 -9.91 -0.05 -13.19 16 8 C 0.15 3.67 6.26 -83.77 -0.52 3.15 16 9 C -0.26 -6.11 9.97 -39.10 -0.39 -6.50 16 10 C -0.09 -2.31 10.02 -39.69 -0.40 -2.71 16 11 C -0.18 -4.84 8.72 -38.84 -0.34 -5.18 16 12 C 0.12 3.32 5.60 -106.85 -0.60 2.72 16 13 C -0.46 -12.97 9.06 -37.74 -0.34 -13.31 16 14 H 0.08 2.17 7.90 -52.48 -0.41 1.76 16 15 C 0.08 1.98 5.17 -17.35 -0.09 1.89 16 16 N -0.80 -21.24 10.78 55.55 0.60 -20.64 16 17 Si 0.91 19.61 29.59 -169.99 -5.03 14.58 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 21 C -0.21 -5.79 8.43 -38.68 -0.33 -6.12 16 22 C -0.14 -1.56 9.76 -26.73 -0.26 -1.82 16 23 C -0.15 -1.68 9.89 -26.69 -0.26 -1.95 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.49 7.95 -51.93 -0.41 0.07 16 29 H 0.41 7.23 6.07 -40.82 -0.25 6.98 16 30 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.12 3.41 5.96 -52.49 -0.31 3.10 16 33 H 0.28 6.74 8.30 -40.82 -0.34 6.41 16 34 H 0.11 3.04 6.34 -52.49 -0.33 2.71 16 35 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.11 1.52 7.70 -51.93 -0.40 1.12 16 37 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 320.54 15.07 4.83 4.83 Total: -1.00 -32.27 320.54 -7.55 -39.82 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -5.06 Total: 11.13 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -2.66 Total: -19.08 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.55 Total: -33.83 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.18 Total: -17.45 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.27 -7.55 -39.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456752158.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.670 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds