Wall clock time and date at job start Mon Mar 30 2020 01:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99827 * 2 1 4 4 C 1.52998 * 109.47049 * 180.02562 * 3 2 1 5 5 C 1.50701 * 115.55942 * 319.89280 * 4 3 2 6 6 O 1.21286 * 120.00097 * 223.46071 * 5 4 3 7 7 N 1.34775 * 120.00123 * 43.46921 * 5 4 3 8 8 C 1.39935 * 120.00134 * 184.66685 * 7 5 4 9 9 C 1.39291 * 119.94889 * 143.50397 * 8 7 5 10 10 C 1.38488 * 120.42859 * 179.97438 * 9 8 7 11 11 C 1.37681 * 120.31959 * 359.97438 * 10 9 8 12 12 C 1.40734 * 119.88739 * 0.02562 * 11 10 9 13 13 C 1.41411 * 120.20973 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00211 * 202.11578 * 13 12 11 15 15 C 1.39934 * 119.99980 * 22.12410 * 13 12 11 16 16 N 1.30822 * 120.00135 * 17.47085 * 15 13 12 17 17 Si 1.86802 * 119.99836 * 197.47942 * 15 13 12 18 18 H 1.48499 * 109.47457 * 89.99381 * 17 15 13 19 19 H 1.48497 * 109.46935 * 209.99768 * 17 15 13 20 20 H 1.48499 * 109.47139 * 329.99328 * 17 15 13 21 21 C 1.38243 * 119.94562 * 323.21849 * 8 7 5 22 22 C 1.53000 * 117.50202 * 174.20913 * 4 3 2 23 23 C 1.52997 * 60.03295 * 252.49538 * 22 4 3 24 24 H 1.08994 * 109.46987 * 299.99588 * 1 2 3 25 25 H 1.08998 * 109.47288 * 60.00093 * 1 2 3 26 26 H 1.09003 * 109.46726 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47140 * 59.99739 * 3 2 1 28 28 H 1.09007 * 109.47052 * 299.99896 * 3 2 1 29 29 H 0.96998 * 119.99693 * 4.65813 * 7 5 4 30 30 H 1.08000 * 119.78560 * 359.97438 * 9 8 7 31 31 H 1.07996 * 119.83516 * 180.02562 * 10 9 8 32 32 H 1.08001 * 120.05429 * 179.97438 * 11 10 9 33 33 H 0.96999 * 120.00143 * 180.02562 * 16 15 13 34 34 H 1.08000 * 120.16000 * 0.02562 * 21 8 7 35 35 H 1.09008 * 117.49688 * 359.97438 * 22 4 3 36 36 H 1.08995 * 117.50473 * 144.99378 * 22 4 3 37 37 H 1.08997 * 117.50048 * 107.49634 * 23 22 4 38 38 H 1.08994 * 117.50214 * 252.52207 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1019 0.0966 0.8748 6 8 5.0722 0.3191 1.5675 7 7 3.5303 -1.1239 0.8877 8 6 3.9944 -2.1046 1.7715 9 6 3.0957 -2.9892 2.3630 10 6 3.5442 -3.9638 3.2387 11 6 4.8849 -4.0692 3.5339 12 6 5.8047 -3.1823 2.9439 13 6 7.1831 -3.2841 3.2427 14 1 7.8311 -2.4320 3.0993 15 6 7.7076 -4.4888 3.7241 16 7 7.0320 -5.5999 3.5810 17 14 9.3724 -4.5104 4.5711 18 1 9.1889 -4.2952 6.0289 19 1 10.0268 -5.8237 4.3431 20 1 10.2250 -3.4294 4.0146 21 6 5.3450 -2.1976 2.0517 22 6 4.3463 2.4749 -0.1377 23 6 4.2687 1.4930 -1.3085 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8463 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 2.7971 -1.3225 0.2845 30 1 2.0422 -2.9146 2.1372 31 1 2.8390 -4.6450 3.6915 32 1 5.2299 -4.8306 4.2177 33 1 7.3954 -6.4349 3.9150 34 1 6.0431 -1.5148 1.5904 35 1 3.7930 3.4098 -0.2278 36 1 5.2891 2.5369 0.4056 37 1 3.6645 1.7819 -2.1684 38 1 5.1604 0.9087 -1.5352 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456752158.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:36 Heat of formation + Delta-G solvation = -50.561258 kcal Electronic energy + Delta-G solvation = -21023.297234 eV Core-core repulsion = 17830.797870 eV Total energy + Delta-G solvation = -3192.499364 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.54106 -39.48897 -38.62987 -37.24680 -36.09372 -34.75615 -31.76633 -30.25482 -28.99702 -27.27261 -26.56349 -24.87899 -23.43802 -22.86800 -22.25734 -20.53418 -19.44417 -18.27024 -17.47463 -17.22519 -16.83410 -16.63999 -16.47182 -16.33757 -15.75057 -15.43162 -14.84183 -14.78795 -14.58603 -14.04960 -13.49928 -13.45838 -13.19757 -12.98706 -12.90616 -12.77480 -12.44875 -12.30124 -12.17477 -11.97753 -11.60423 -11.53963 -11.32077 -11.13191 -10.81767 -10.62557 -10.45339 -9.43004 -8.76113 -8.60927 -6.37964 0.85998 0.99306 1.35006 1.47680 1.49028 1.68570 2.19415 2.23360 2.60176 2.71039 2.90452 3.66530 3.74373 3.82799 3.86570 3.98208 4.39120 4.46760 4.55496 4.59152 4.64307 4.69170 4.69594 4.82322 4.93130 4.95170 5.06806 5.10477 5.16845 5.19355 5.27998 5.35493 5.79041 5.89926 6.07628 6.12401 6.19001 6.34295 6.67663 6.74667 6.93012 7.01481 7.42263 8.31087 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.004689 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.891589 B = 5969.943337 C = 6911.279781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.420 6.420 3 C 0.110 3.890 4 C -0.181 4.181 5 C 0.533 3.467 6 O -0.578 6.578 7 N -0.641 5.641 8 C 0.153 3.847 9 C -0.252 4.252 10 C -0.090 4.090 11 C -0.203 4.203 12 C 0.086 3.914 13 C -0.501 4.501 14 H 0.061 0.939 15 C 0.038 3.962 16 N -0.819 5.819 17 Si 0.984 3.016 18 H -0.259 1.259 19 H -0.259 1.259 20 H -0.265 1.265 21 C -0.241 4.241 22 C -0.128 4.128 23 C -0.133 4.133 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.422 0.578 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.112 0.888 33 H 0.290 0.710 34 H 0.084 0.916 35 H 0.144 0.856 36 H 0.085 0.915 37 H 0.145 0.855 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 11.518 -9.154 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.339 6.339 3 C 0.034 3.966 4 C -0.185 4.185 5 C 0.322 3.678 6 O -0.457 6.457 7 N -0.290 5.290 8 C 0.059 3.941 9 C -0.274 4.274 10 C -0.109 4.109 11 C -0.222 4.222 12 C 0.084 3.916 13 C -0.530 4.530 14 H 0.079 0.921 15 C -0.177 4.177 16 N -0.444 5.444 17 Si 0.804 3.196 18 H -0.184 1.184 19 H -0.183 1.183 20 H -0.189 1.189 21 C -0.262 4.262 22 C -0.165 4.165 23 C -0.170 4.170 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.265 0.735 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.129 0.871 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.162 0.838 36 H 0.103 0.897 37 H 0.163 0.837 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.340 11.275 -8.682 18.196 hybrid contribution 0.491 -0.257 0.335 0.648 sum -10.848 11.017 -8.347 17.571 Atomic orbital electron populations 1.22925 0.78515 1.03900 1.01225 1.87551 1.22156 1.28518 1.95711 1.22021 0.86976 0.84893 1.02703 1.21539 0.95650 0.98340 1.02942 1.20369 0.82393 0.83188 0.81862 1.90701 1.28274 1.82358 1.44411 1.43637 1.36932 1.10263 1.38164 1.17686 0.92173 0.90714 0.93497 1.20448 0.97845 1.02230 1.06831 1.20840 0.95128 0.97405 0.97514 1.21406 0.92617 1.03558 1.04667 1.17872 0.94210 0.90633 0.88924 1.19759 0.94190 0.98199 1.40854 0.92053 1.26733 1.03603 0.93745 0.93624 1.69855 1.40085 0.99804 1.34690 0.85188 0.76341 0.78923 0.79101 1.18366 1.18320 1.18949 1.21014 0.94001 1.04814 1.06414 1.23125 1.00670 0.92545 1.00183 1.23284 1.01446 1.01126 0.91176 0.93547 0.91681 0.88992 0.92108 0.88288 0.73491 0.85638 0.85815 0.87068 0.89879 0.89819 0.83831 0.89683 0.83678 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -9.12 7.38 -148.98 -1.10 -10.22 16 3 C 0.11 2.06 6.00 71.98 0.43 2.50 16 4 C -0.18 -4.71 2.47 -52.90 -0.13 -4.84 16 5 C 0.53 21.39 7.12 87.66 0.62 22.01 16 6 O -0.58 -29.10 13.84 -3.05 -0.04 -29.14 16 7 N -0.64 -26.12 4.88 -303.65 -1.48 -27.60 16 8 C 0.15 7.62 6.26 38.10 0.24 7.86 16 9 C -0.25 -11.64 9.97 22.58 0.23 -11.41 16 10 C -0.09 -4.38 10.02 22.20 0.22 -4.16 16 11 C -0.20 -11.45 8.72 22.75 0.20 -11.25 16 12 C 0.09 5.24 5.60 -21.31 -0.12 5.12 16 13 C -0.50 -30.23 9.06 23.46 0.21 -30.02 16 14 H 0.06 3.73 7.90 -2.91 -0.02 3.71 16 15 C 0.04 2.06 5.17 85.25 0.44 2.50 16 16 N -0.82 -44.72 10.78 21.82 0.24 -44.48 16 17 Si 0.98 41.08 29.59 68.60 2.03 43.11 16 18 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 19 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 21 C -0.24 -14.00 8.43 22.85 0.19 -13.81 16 22 C -0.13 -2.71 9.76 30.59 0.30 -2.41 16 23 C -0.13 -2.67 9.89 30.62 0.30 -2.37 16 24 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.09 7.95 -2.38 -0.02 1.07 16 29 H 0.42 14.51 6.07 -92.71 -0.56 13.94 16 30 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 31 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 32 H 0.11 6.43 5.96 -2.91 -0.02 6.41 16 33 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 34 H 0.08 5.15 6.34 -2.91 -0.02 5.13 16 35 H 0.14 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.08 2.31 7.70 -2.39 -0.02 2.30 16 37 H 0.15 1.72 8.09 -2.39 -0.02 1.70 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -76.05 320.54 4.54 -71.51 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: 0.51 Total: 35.43 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 4.39 Total: -38.61 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -1.25 Total: -72.08 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -1.14 Total: -39.36 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -76.05 4.54 -71.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456752158.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.947 kcal (2) G-P(sol) polarization free energy of solvation -76.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds