Wall clock time and date at job start Mon Mar 30 2020 01:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34715 * 116.99791 * 2 1 4 4 O 1.21462 * 119.99987 * 359.97438 * 3 2 1 5 5 C 1.47727 * 119.99550 * 179.97438 * 3 2 1 6 6 C 1.39475 * 119.98500 * 359.72528 * 5 3 2 7 7 C 1.37928 * 119.65612 * 179.77294 * 6 5 3 8 8 C 1.38175 * 120.03601 * 0.58616 * 7 6 5 9 9 C 1.38856 * 120.69834 * 359.73963 * 8 7 6 10 10 C 1.37574 * 119.81866 * 359.84232 * 9 8 7 11 11 C 1.50694 * 121.74116 * 180.52822 * 10 9 8 12 12 C 1.52901 * 109.97356 * 343.06363 * 11 10 9 13 13 N 1.47167 * 108.48955 * 50.30156 * 12 11 10 14 14 C 1.46895 * 111.00164 * 165.41227 * 13 12 11 15 15 C 1.50710 * 109.47178 * 56.93244 * 14 13 12 16 16 H 1.07995 * 119.99530 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99762 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00332 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47437 * 89.99453 * 19 17 15 21 21 H 1.48498 * 109.47105 * 209.99952 * 19 17 15 22 22 H 1.48509 * 109.46836 * 329.99756 * 19 17 15 23 23 C 1.46633 * 110.24137 * 288.82749 * 13 12 11 24 24 H 1.08999 * 109.47008 * 60.00049 * 1 2 3 25 25 H 1.09005 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47465 * 300.00039 * 1 2 3 27 27 H 1.07999 * 120.17216 * 0.02562 * 6 5 3 28 28 H 1.08001 * 119.97981 * 180.31235 * 7 6 5 29 29 H 1.07997 * 119.65240 * 179.72271 * 8 7 6 30 30 H 1.08999 * 109.38715 * 103.21981 * 11 10 9 31 31 H 1.08995 * 109.38661 * 222.91131 * 11 10 9 32 32 H 1.09000 * 109.63937 * 290.59746 * 12 11 10 33 33 H 1.09005 * 109.63119 * 169.99508 * 12 11 10 34 34 H 1.08997 * 109.47494 * 176.92906 * 14 13 12 35 35 H 1.09003 * 109.47228 * 296.93436 * 14 13 12 36 36 H 0.97002 * 119.99877 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.26818 * 292.33109 * 23 13 12 38 38 H 1.08999 * 109.23512 * 172.84482 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.2980 0.1076 0.0069 7 6 5.6750 0.1876 0.0026 8 6 6.2961 1.4219 0.0044 9 6 5.5482 2.5919 0.0050 10 6 4.1740 2.5253 0.0006 11 6 3.3202 3.7670 -0.0108 12 6 4.1556 4.9791 0.4027 13 7 5.3865 4.9946 -0.4039 14 6 6.0609 6.2962 -0.3101 15 6 6.3539 6.6073 1.1351 16 1 6.0673 5.9081 1.9067 17 6 6.9869 7.7848 1.4723 18 7 7.2421 8.0564 2.7335 19 14 7.4806 8.9951 0.1378 20 1 6.3689 9.9505 -0.1000 21 1 8.6904 9.7407 0.5688 22 1 7.7751 8.2562 -1.1163 23 6 6.2796 3.9088 0.0125 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.8103 -0.8560 0.0110 28 1 6.2680 -0.7150 0.0024 29 1 7.3746 1.4774 0.0056 30 1 2.9251 3.9252 -1.0142 31 1 2.4923 3.6432 0.6871 32 1 4.4113 4.9045 1.4596 33 1 3.5889 5.8928 0.2236 34 1 6.9949 6.2628 -0.8711 35 1 5.4155 7.0706 -0.7248 36 1 7.6870 8.8850 2.9707 37 1 6.6467 4.1108 1.0187 38 1 7.1242 3.8552 -0.6744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459542867.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:14 Heat of formation + Delta-G solvation = -49.992041 kcal Electronic energy + Delta-G solvation = -21160.499160 eV Core-core repulsion = 17968.024479 eV Total energy + Delta-G solvation = -3192.474681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77314 -39.33710 -36.79308 -36.50556 -33.01861 -32.36029 -31.40762 -29.42577 -27.85069 -27.23919 -24.39151 -23.73538 -22.99688 -21.25091 -20.69285 -18.96817 -17.55208 -16.96003 -16.84013 -16.42233 -15.72410 -15.36535 -14.86771 -14.43907 -14.19411 -13.90593 -13.60607 -13.41760 -12.91338 -12.68544 -12.40310 -12.31774 -12.27560 -11.86880 -11.83937 -11.31728 -11.26822 -10.93941 -10.92452 -10.82018 -10.40941 -10.16820 -10.04298 -9.67100 -9.46939 -8.83160 -8.63364 -8.39167 -7.27521 -6.13479 -4.14170 0.78954 1.49004 2.60225 2.64498 3.26527 3.34226 3.37651 3.84659 4.37267 4.68921 4.82224 4.90644 4.95036 4.97213 5.04058 5.16675 5.19699 5.33060 5.39237 5.50331 5.74460 5.82119 5.96917 6.05711 6.15452 6.21663 6.27519 6.38784 6.45355 6.55779 6.64649 6.75836 6.83599 6.91567 7.00339 7.05492 7.51661 7.76281 8.00002 8.00906 8.40595 8.88168 9.49035 10.99277 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.004493 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.983116 B = 6230.463829 C = 6819.553248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.507 3.493 4 O -0.497 6.497 5 C -0.139 4.139 6 C -0.071 4.071 7 C -0.142 4.142 8 C -0.081 4.081 9 C -0.077 4.077 10 C 0.004 3.996 11 C -0.085 4.085 12 C 0.058 3.942 13 N -0.530 5.530 14 C 0.152 3.848 15 C -0.555 4.555 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.879 3.121 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.263 1.263 23 C 0.092 3.908 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.264 0.736 37 H 0.068 0.932 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 -17.185 -6.128 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.353 3.647 4 O -0.386 6.386 5 C -0.140 4.140 6 C -0.090 4.090 7 C -0.160 4.160 8 C -0.100 4.100 9 C -0.077 4.077 10 C 0.003 3.997 11 C -0.122 4.122 12 C -0.070 4.070 13 N -0.253 5.253 14 C 0.025 3.975 15 C -0.593 4.593 16 H 0.093 0.907 17 C -0.129 4.129 18 N -0.536 5.536 19 Si 0.706 3.294 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.036 4.036 24 H 0.081 0.919 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.001 -16.817 -6.517 19.731 hybrid contribution 0.396 0.865 0.352 1.014 sum -7.605 -15.952 -6.164 18.717 Atomic orbital electron populations 1.23234 0.76322 1.03455 1.02643 1.86537 1.23285 1.33107 1.84710 1.21320 0.89267 0.81224 0.72889 1.90813 1.66974 1.35282 1.45547 1.18995 0.88568 0.94634 1.11841 1.21273 0.94004 0.97342 0.96334 1.20969 0.94257 0.97733 1.03062 1.21387 1.00380 0.91778 0.96411 1.19920 0.92518 0.96112 0.99186 1.19802 0.93463 0.93645 0.92783 1.21020 0.97035 0.90762 1.03369 1.22044 0.91547 0.97037 0.96383 1.62796 1.05490 1.04617 1.52392 1.20232 0.94174 0.86403 0.96673 1.21699 1.39491 1.05797 0.92346 0.90670 1.24964 0.94909 0.97831 0.95244 1.69929 1.41913 1.25107 1.16627 0.86796 0.78384 0.81538 0.82696 1.20134 1.21307 1.18782 1.20900 0.94663 0.86845 1.01164 0.91884 0.88241 0.91872 0.84986 0.85455 0.85372 0.89857 0.88529 0.93705 0.90634 0.95191 0.95296 0.92635 0.91436 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.33 9.80 -40.53 -0.40 -4.73 16 3 C 0.51 7.43 7.85 34.61 0.27 7.70 16 4 O -0.50 -8.23 12.92 -19.24 -0.25 -8.48 16 5 C -0.14 -2.07 5.88 -104.89 -0.62 -2.69 16 6 C -0.07 -0.88 9.61 -39.23 -0.38 -1.26 16 7 C -0.14 -1.65 10.03 -39.72 -0.40 -2.05 16 8 C -0.08 -1.09 9.64 -39.38 -0.38 -1.47 16 9 C -0.08 -1.28 5.79 -104.66 -0.61 -1.88 16 10 C 0.00 0.06 5.80 -104.20 -0.60 -0.54 16 11 C -0.09 -1.51 4.49 -27.94 -0.13 -1.64 16 12 C 0.06 1.18 4.88 -3.73 -0.02 1.16 16 13 N -0.53 -11.14 4.90 -237.61 -1.16 -12.30 16 14 C 0.15 3.61 4.16 -4.97 -0.02 3.59 16 15 C -0.55 -15.18 8.21 -34.44 -0.28 -15.46 16 16 H 0.08 2.24 6.13 -52.49 -0.32 1.92 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 19 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 23 C 0.09 1.76 5.07 -5.15 -0.03 1.73 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.13 1.32 7.60 -52.49 -0.40 0.92 16 28 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.08 1.49 8.08 -51.93 -0.42 1.07 16 31 H 0.10 1.72 5.98 -51.93 -0.31 1.41 16 32 H 0.04 0.99 6.82 -51.93 -0.35 0.64 16 33 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 34 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 35 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 1.44 6.73 -51.93 -0.35 1.09 16 38 H 0.08 1.42 8.13 -51.93 -0.42 0.99 16 LS Contribution 308.34 15.07 4.65 4.65 Total: -1.00 -31.16 308.34 -8.31 -39.48 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.04 Total: 0.63 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.21 Total: -9.44 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.39 Total: -38.58 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.65 Total: -13.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.16 -8.31 -39.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459542867.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.516 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds