Wall clock time and date at job start Mon Mar 30 2020 01:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34715 * 116.99791 * 2 1 4 4 O 1.21462 * 119.99987 * 359.97438 * 3 2 1 5 5 C 1.47727 * 119.99550 * 179.97438 * 3 2 1 6 6 C 1.39475 * 119.98500 * 359.72528 * 5 3 2 7 7 C 1.37928 * 119.65612 * 179.77294 * 6 5 3 8 8 C 1.38175 * 120.03601 * 0.58616 * 7 6 5 9 9 C 1.38856 * 120.69834 * 359.73963 * 8 7 6 10 10 C 1.37574 * 119.81866 * 359.84232 * 9 8 7 11 11 C 1.50694 * 121.74116 * 180.52822 * 10 9 8 12 12 C 1.52901 * 109.97356 * 343.06363 * 11 10 9 13 13 N 1.47167 * 108.48955 * 50.30156 * 12 11 10 14 14 C 1.46895 * 111.00164 * 165.41227 * 13 12 11 15 15 C 1.50710 * 109.47178 * 56.93244 * 14 13 12 16 16 H 1.07995 * 119.99530 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99762 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00332 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47437 * 89.99453 * 19 17 15 21 21 H 1.48498 * 109.47105 * 209.99952 * 19 17 15 22 22 H 1.48509 * 109.46836 * 329.99756 * 19 17 15 23 23 C 1.46633 * 110.24137 * 288.82749 * 13 12 11 24 24 H 1.08999 * 109.47008 * 60.00049 * 1 2 3 25 25 H 1.09005 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47465 * 300.00039 * 1 2 3 27 27 H 1.07999 * 120.17216 * 0.02562 * 6 5 3 28 28 H 1.08001 * 119.97981 * 180.31235 * 7 6 5 29 29 H 1.07997 * 119.65240 * 179.72271 * 8 7 6 30 30 H 1.08999 * 109.38715 * 103.21981 * 11 10 9 31 31 H 1.08995 * 109.38661 * 222.91131 * 11 10 9 32 32 H 1.09000 * 109.63937 * 290.59746 * 12 11 10 33 33 H 1.09005 * 109.63119 * 169.99508 * 12 11 10 34 34 H 1.08997 * 109.47494 * 176.92906 * 14 13 12 35 35 H 1.09003 * 109.47228 * 296.93436 * 14 13 12 36 36 H 0.97002 * 119.99877 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.26818 * 292.33109 * 23 13 12 38 38 H 1.08999 * 109.23512 * 172.84482 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.2980 0.1076 0.0069 7 6 5.6750 0.1876 0.0026 8 6 6.2961 1.4219 0.0044 9 6 5.5482 2.5919 0.0050 10 6 4.1740 2.5253 0.0006 11 6 3.3202 3.7670 -0.0108 12 6 4.1556 4.9791 0.4027 13 7 5.3865 4.9946 -0.4039 14 6 6.0609 6.2962 -0.3101 15 6 6.3539 6.6073 1.1351 16 1 6.0673 5.9081 1.9067 17 6 6.9869 7.7848 1.4723 18 7 7.2421 8.0564 2.7335 19 14 7.4806 8.9951 0.1378 20 1 6.3689 9.9505 -0.1000 21 1 8.6904 9.7407 0.5688 22 1 7.7751 8.2562 -1.1163 23 6 6.2796 3.9088 0.0125 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.8103 -0.8560 0.0110 28 1 6.2680 -0.7150 0.0024 29 1 7.3746 1.4774 0.0056 30 1 2.9251 3.9252 -1.0142 31 1 2.4923 3.6432 0.6871 32 1 4.4113 4.9045 1.4596 33 1 3.5889 5.8928 0.2236 34 1 6.9949 6.2628 -0.8711 35 1 5.4155 7.0706 -0.7248 36 1 7.6870 8.8850 2.9707 37 1 6.6467 4.1108 1.0187 38 1 7.1242 3.8552 -0.6744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459542867.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:14 Heat of formation + Delta-G solvation = -70.040755 kcal Electronic energy + Delta-G solvation = -21161.368538 eV Core-core repulsion = 17968.024479 eV Total energy + Delta-G solvation = -3193.344058 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.89912 -40.54242 -38.28208 -37.55671 -34.90813 -33.75300 -32.91615 -30.71265 -29.35060 -28.41334 -25.95923 -24.97688 -24.40467 -22.89903 -21.80334 -20.51473 -18.98461 -18.55883 -17.98781 -17.43056 -16.98516 -16.70259 -16.38468 -16.21966 -15.49498 -15.14154 -15.11721 -14.54573 -14.44567 -14.12339 -13.91307 -13.71894 -13.52811 -13.18080 -12.93721 -12.88971 -12.71359 -12.59887 -12.32240 -12.23310 -11.93282 -11.77791 -11.74476 -11.42695 -10.97469 -10.80696 -9.94667 -9.60136 -9.06383 -8.32711 -6.38818 -0.30689 0.37722 1.36782 1.37248 1.49558 1.50437 1.68816 2.33447 2.74595 3.02489 3.22712 3.66224 3.71784 3.81238 4.07923 4.11252 4.33466 4.35240 4.35781 4.39747 4.52541 4.60636 4.71034 4.76542 4.79661 4.84326 4.96270 4.98031 5.02908 5.07055 5.17119 5.28126 5.31821 5.44776 5.48336 5.61155 5.89909 6.07832 6.26199 6.33409 6.67170 6.69893 7.28434 8.83493 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.004493 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.983116 B = 6230.463829 C = 6819.553248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.507 3.493 4 O -0.526 6.526 5 C -0.152 4.152 6 C -0.057 4.057 7 C -0.127 4.127 8 C -0.077 4.077 9 C -0.102 4.102 10 C -0.023 4.023 11 C -0.069 4.069 12 C 0.064 3.936 13 N -0.527 5.527 14 C 0.158 3.842 15 C -0.553 4.553 16 H 0.034 0.966 17 C 0.013 3.987 18 N -0.947 5.947 19 Si 0.950 3.050 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.243 1.243 23 C 0.097 3.903 24 H 0.061 0.939 25 H 0.137 0.863 26 H 0.059 0.941 27 H 0.163 0.837 28 H 0.171 0.829 29 H 0.150 0.850 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.013 0.987 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.031 0.969 36 H 0.267 0.733 37 H 0.033 0.967 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.444 -19.748 -8.083 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.271 6.271 3 C 0.354 3.646 4 O -0.418 6.418 5 C -0.153 4.153 6 C -0.075 4.075 7 C -0.144 4.144 8 C -0.095 4.095 9 C -0.103 4.103 10 C -0.024 4.024 11 C -0.106 4.106 12 C -0.065 4.065 13 N -0.249 5.249 14 C 0.031 3.969 15 C -0.592 4.592 16 H 0.052 0.948 17 C -0.185 4.185 18 N -0.587 5.587 19 Si 0.773 3.227 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.166 1.166 23 C -0.031 4.031 24 H 0.080 0.920 25 H 0.155 0.845 26 H 0.078 0.922 27 H 0.181 0.819 28 H 0.189 0.811 29 H 0.168 0.832 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.032 0.968 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.744 -19.422 -8.484 22.565 hybrid contribution 0.241 1.475 1.036 1.819 sum -7.503 -17.947 -7.448 20.829 Atomic orbital electron populations 1.23578 0.74359 1.05905 1.02498 1.86515 1.25126 1.31386 1.84035 1.21371 0.89324 0.81597 0.72258 1.90796 1.67553 1.36407 1.47026 1.19096 0.89090 0.94733 1.12378 1.21684 0.94388 0.97507 0.93885 1.21440 0.94238 0.98353 1.00410 1.21671 1.01438 0.91347 0.95043 1.19779 0.92637 0.95873 1.01983 1.19746 0.93630 0.93968 0.95047 1.20778 0.96510 0.90431 1.02864 1.21972 0.91736 0.98233 0.94531 1.62807 1.05765 1.04070 1.52306 1.20115 0.94702 0.88009 0.94081 1.21882 1.38815 1.04987 0.93506 0.94798 1.25913 0.94939 0.99973 0.97684 1.70080 1.43421 1.26058 1.19124 0.85668 0.78108 0.78873 0.80041 1.19404 1.20907 1.16623 1.20843 0.95095 0.87731 0.99423 0.91973 0.84459 0.92193 0.81910 0.81114 0.83212 0.90187 0.89041 0.96836 0.91463 0.94382 0.95064 0.92454 0.94910 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.35 -7.70 9.80 -56.24 -0.55 -8.25 16 3 C 0.51 14.35 7.85 70.33 0.55 14.91 16 4 O -0.53 -17.56 12.92 19.96 0.26 -17.31 16 5 C -0.15 -4.31 5.88 -20.04 -0.12 -4.42 16 6 C -0.06 -1.18 9.61 22.49 0.22 -0.97 16 7 C -0.13 -2.38 10.03 22.18 0.22 -2.16 16 8 C -0.08 -1.86 9.64 22.40 0.22 -1.65 16 9 C -0.10 -3.37 5.79 -19.89 -0.12 -3.49 16 10 C -0.02 -0.79 5.80 -19.59 -0.11 -0.90 16 11 C -0.07 -2.56 4.49 29.81 0.13 -2.42 16 12 C 0.06 2.75 4.88 86.22 0.42 3.17 16 13 N -0.53 -22.82 4.90 -905.67 -4.44 -27.26 16 14 C 0.16 7.63 4.16 85.56 0.36 7.98 16 15 C -0.55 -31.58 8.21 25.60 0.21 -31.37 16 16 H 0.03 2.17 6.13 -2.91 -0.02 2.15 16 17 C 0.01 0.76 5.47 84.65 0.46 1.22 16 18 N -0.95 -59.12 13.96 21.44 0.30 -58.82 16 19 Si 0.95 43.79 27.47 68.60 1.88 45.67 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 23 C 0.10 3.79 5.07 85.59 0.43 4.22 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.14 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.16 2.42 7.60 -2.91 -0.02 2.40 16 28 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.08 2.96 8.08 -2.39 -0.02 2.94 16 31 H 0.09 3.45 5.98 -2.39 -0.01 3.44 16 32 H 0.01 0.65 6.82 -2.39 -0.02 0.63 16 33 H 0.07 2.91 8.03 -2.38 -0.02 2.89 16 34 H 0.04 1.78 7.18 -2.39 -0.02 1.76 16 35 H 0.03 1.49 7.57 -2.39 -0.02 1.47 16 36 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 37 H 0.03 1.49 6.73 -2.39 -0.02 1.48 16 38 H 0.09 3.28 8.13 -2.39 -0.02 3.26 16 Total: -1.00 -71.09 308.34 2.54 -68.55 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.01 Total: 11.65 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 4.08 Total: -14.23 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -4.14 Total: -86.08 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.29 Total: -25.56 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -71.09 2.54 -68.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459542867.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.494 kcal (2) G-P(sol) polarization free energy of solvation -71.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds