Wall clock time and date at job start Mon Mar 30 2020 01:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00316 * 2 1 4 4 C 1.53003 * 109.47437 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46869 * 65.83364 * 4 3 2 6 6 C 1.36717 * 120.00199 * 265.58665 * 5 4 3 7 7 H 1.07992 * 120.00134 * 139.37941 * 6 5 4 8 8 C 1.39122 * 119.99618 * 319.37944 * 6 5 4 9 9 N 1.31322 * 120.00106 * 162.34265 * 8 6 5 10 10 Si 1.86804 * 120.00313 * 342.34568 * 8 6 5 11 11 H 1.48504 * 109.46900 * 90.66624 * 10 8 6 12 12 H 1.48494 * 109.47134 * 210.66587 * 10 8 6 13 13 H 1.48500 * 109.46870 * 330.66727 * 10 8 6 14 14 C 1.34778 * 120.00034 * 85.58601 * 5 4 3 15 15 O 1.21764 * 120.00054 * 359.97438 * 14 5 4 16 16 C 1.46227 * 120.00176 * 179.97438 * 14 5 4 17 17 C 1.34976 * 120.00251 * 172.04196 * 16 14 5 18 18 C 1.47144 * 119.99721 * 349.08538 * 17 16 14 19 19 C 1.39875 * 120.17608 * 316.63656 * 18 17 16 20 20 C 1.37881 * 119.82504 * 179.69981 * 19 18 17 21 21 C 1.38407 * 120.17096 * 0.60445 * 20 19 18 22 22 C 1.38418 * 120.35565 * 359.67175 * 21 20 19 23 23 C 1.37877 * 120.17014 * 0.02689 * 22 21 20 24 24 H 1.08998 * 109.47076 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46606 * 299.99692 * 1 2 3 26 26 H 1.08994 * 109.47210 * 59.99340 * 1 2 3 27 27 H 1.08998 * 109.46993 * 60.00495 * 3 2 1 28 28 H 1.09004 * 109.47619 * 300.00254 * 3 2 1 29 29 H 1.08999 * 109.47047 * 305.83650 * 4 3 2 30 30 H 1.09003 * 109.47317 * 185.83160 * 4 3 2 31 31 H 0.97001 * 120.00193 * 179.97438 * 9 8 6 32 32 H 1.08002 * 120.00020 * 351.77454 * 16 14 5 33 33 H 1.07999 * 120.00029 * 169.07165 * 17 16 14 34 34 H 1.08007 * 120.08343 * 0.02562 * 19 18 17 35 35 H 1.07997 * 119.91193 * 180.29694 * 20 19 18 36 36 H 1.08000 * 119.82304 * 179.69388 * 21 20 19 37 37 H 1.08001 * 119.91186 * 180.02562 * 22 21 20 38 38 H 1.08008 * 120.08553 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9771 0.5825 -1.2611 6 6 4.1850 -0.7666 -1.3386 7 1 3.8713 -1.3117 -2.2164 8 6 4.8006 -1.4370 -0.2864 9 7 4.6965 -2.7424 -0.1890 10 14 5.7754 -0.4802 0.9880 11 1 4.8794 -0.0906 2.1064 12 1 6.8766 -1.3294 1.5088 13 1 6.3448 0.7400 0.3618 14 6 4.1785 1.3586 -2.3445 15 8 3.9929 2.5600 -2.2758 16 6 4.6198 0.7578 -3.6025 17 6 4.6672 1.5035 -4.7266 18 6 4.0546 2.8412 -4.7483 19 6 2.7970 3.0480 -4.1720 20 6 2.2324 4.3058 -4.1910 21 6 2.9012 5.3595 -4.7893 22 6 4.1435 5.1618 -5.3669 23 6 4.7242 3.9114 -5.3507 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6888 1.8462 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8506 0.5559 0.8322 30 1 3.9786 2.1750 0.1038 31 1 5.1260 -3.2099 0.5444 32 1 4.9120 -0.2816 -3.6313 33 1 5.1549 1.1185 -5.6099 34 1 2.2719 2.2257 -3.7087 35 1 1.2636 4.4681 -3.7422 36 1 2.4515 6.3413 -4.8054 37 1 4.6592 5.9892 -5.8315 38 1 5.6938 3.7588 -5.8014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493586994.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:53 Heat of formation + Delta-G solvation = -9.187872 kcal Electronic energy + Delta-G solvation = -21594.291426 eV Core-core repulsion = 18403.586147 eV Total energy + Delta-G solvation = -3190.705279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.39617 -38.24188 -37.04482 -34.95828 -33.10803 -32.00393 -30.40674 -29.96035 -28.58837 -25.91649 -24.91590 -23.60238 -22.21034 -21.88235 -20.33768 -18.59697 -17.10845 -16.66147 -15.98728 -15.77232 -15.56335 -14.82088 -14.66291 -14.55272 -14.26125 -13.68315 -13.59286 -13.04572 -12.94514 -12.69121 -12.45765 -12.20465 -12.03200 -11.72556 -11.51046 -11.42508 -10.93875 -10.82001 -10.63528 -10.59635 -10.11585 -9.94284 -9.40930 -9.13841 -9.10443 -8.65037 -8.32607 -7.73922 -7.44685 -6.47015 -4.04095 1.37306 1.98775 2.49524 3.05540 3.20790 3.26907 4.10369 4.22313 4.36573 4.40468 4.45288 5.01846 5.32654 5.33917 5.38902 5.55476 5.56452 5.64440 5.73454 5.80890 5.86792 5.93309 5.93568 6.01219 6.08767 6.18881 6.32465 6.41855 6.47565 6.55244 6.78083 6.88431 6.99195 7.09105 7.26226 7.33564 7.53115 7.75789 8.07899 8.24389 8.96281 9.34461 9.68356 10.63269 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.006427 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.391319 B = 4355.470259 C = 5083.200518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.057 3.943 4 C 0.096 3.904 5 N -0.440 5.440 6 C -0.326 4.326 7 H 0.104 0.896 8 C 0.071 3.929 9 N -0.854 5.854 10 Si 0.876 3.124 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.262 1.262 14 C 0.489 3.511 15 O -0.588 6.588 16 C -0.144 4.144 17 C -0.096 4.096 18 C -0.040 4.040 19 C -0.029 4.029 20 C -0.137 4.137 21 C -0.124 4.124 22 C -0.140 4.140 23 C -0.112 4.112 24 H 0.081 0.919 25 H 0.030 0.970 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.275 0.725 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 8.506 -4.656 10.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C -0.021 4.021 4 C -0.028 4.028 5 N -0.158 5.158 6 C -0.454 4.454 7 H 0.121 0.879 8 C -0.137 4.137 9 N -0.489 5.489 10 Si 0.704 3.296 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.186 1.186 14 C 0.281 3.719 15 O -0.476 6.476 16 C -0.165 4.165 17 C -0.117 4.117 18 C -0.040 4.040 19 C -0.047 4.047 20 C -0.155 4.155 21 C -0.142 4.142 22 C -0.159 4.159 23 C -0.131 4.131 24 H 0.099 0.901 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.790 8.689 -4.449 10.472 hybrid contribution 0.317 0.349 1.016 1.120 sum -3.473 9.038 -3.433 10.273 Atomic orbital electron populations 1.22661 0.82927 1.02116 0.98796 1.88192 1.17782 1.26810 1.95039 1.22831 0.94829 0.85070 0.99350 1.21808 0.92331 0.99260 0.89357 1.43630 1.56118 1.07724 1.08324 1.18978 1.38934 0.80457 1.06989 0.87855 1.25368 0.95778 0.95185 0.97369 1.69681 1.39998 1.07798 1.31378 0.86993 0.80142 0.80777 0.81734 1.19958 1.21392 1.18581 1.18440 0.81644 0.86024 0.85769 1.90740 1.57274 1.14411 1.85147 1.23264 1.00658 1.00205 0.92364 1.22141 0.98777 0.92979 0.97774 1.18881 0.94264 0.93329 0.97556 1.21060 0.94011 0.96809 0.92865 1.20841 1.00060 0.93315 1.01314 1.20994 0.95568 0.98178 0.99441 1.20801 0.96157 0.96748 1.02148 1.21113 0.99119 0.92701 1.00135 0.90059 0.95136 0.94878 0.93938 0.93213 0.90353 0.89896 0.91462 0.84475 0.85810 0.87117 0.87162 0.87272 0.87090 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.60 10.42 -35.23 -0.37 -7.97 16 3 C 0.06 1.12 6.25 37.16 0.23 1.35 16 4 C 0.10 2.12 4.35 -4.04 -0.02 2.10 16 5 N -0.44 -10.50 2.10 -116.46 -0.25 -10.75 16 6 C -0.33 -8.40 8.50 -15.05 -0.13 -8.53 16 7 H 0.10 2.80 7.20 -52.49 -0.38 2.42 16 8 C 0.07 1.87 5.34 -17.44 -0.09 1.78 16 9 N -0.85 -23.44 13.95 55.50 0.77 -22.67 16 10 Si 0.88 20.48 25.04 -169.99 -4.26 16.23 16 11 H -0.27 -6.16 6.53 56.52 0.37 -5.79 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 13 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 14 C 0.49 11.19 6.53 -13.05 -0.09 11.10 16 15 O -0.59 -13.92 11.86 5.13 0.06 -13.86 16 16 C -0.14 -2.90 9.12 -37.53 -0.34 -3.25 16 17 C -0.10 -1.68 9.81 -37.13 -0.36 -2.04 16 18 C -0.04 -0.73 4.54 -105.06 -0.48 -1.20 16 19 C -0.03 -0.54 6.62 -39.10 -0.26 -0.80 16 20 C -0.14 -2.26 10.03 -39.65 -0.40 -2.66 16 21 C -0.12 -1.85 10.04 -39.45 -0.40 -2.25 16 22 C -0.14 -2.09 10.03 -39.65 -0.40 -2.48 16 23 C -0.11 -1.81 9.80 -39.10 -0.38 -2.19 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.81 3.43 -51.93 -0.18 1.63 16 30 H 0.08 1.77 7.56 -51.93 -0.39 1.37 16 31 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.14 2.71 6.72 -52.49 -0.35 2.36 16 33 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.11 2.18 6.99 -52.48 -0.37 1.81 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -29.74 317.29 -6.31 -36.06 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.06 Total: 5.63 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.00 Total: -7.45 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.53 Total: -33.41 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.31 Total: -21.83 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.26 Total: 16.23 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.74 -6.31 -36.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493586994.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.868 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds