Wall clock time and date at job start Mon Mar 30 2020 01:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00316 * 2 1 4 4 C 1.53003 * 109.47437 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46869 * 65.83364 * 4 3 2 6 6 C 1.36717 * 120.00199 * 265.58665 * 5 4 3 7 7 H 1.07992 * 120.00134 * 139.37941 * 6 5 4 8 8 C 1.39122 * 119.99618 * 319.37944 * 6 5 4 9 9 N 1.31322 * 120.00106 * 162.34265 * 8 6 5 10 10 Si 1.86804 * 120.00313 * 342.34568 * 8 6 5 11 11 H 1.48504 * 109.46900 * 90.66624 * 10 8 6 12 12 H 1.48494 * 109.47134 * 210.66587 * 10 8 6 13 13 H 1.48500 * 109.46870 * 330.66727 * 10 8 6 14 14 C 1.34778 * 120.00034 * 85.58601 * 5 4 3 15 15 O 1.21764 * 120.00054 * 359.97438 * 14 5 4 16 16 C 1.46227 * 120.00176 * 179.97438 * 14 5 4 17 17 C 1.34976 * 120.00251 * 172.04196 * 16 14 5 18 18 C 1.47144 * 119.99721 * 349.08538 * 17 16 14 19 19 C 1.39875 * 120.17608 * 316.63656 * 18 17 16 20 20 C 1.37881 * 119.82504 * 179.69981 * 19 18 17 21 21 C 1.38407 * 120.17096 * 0.60445 * 20 19 18 22 22 C 1.38418 * 120.35565 * 359.67175 * 21 20 19 23 23 C 1.37877 * 120.17014 * 0.02689 * 22 21 20 24 24 H 1.08998 * 109.47076 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46606 * 299.99692 * 1 2 3 26 26 H 1.08994 * 109.47210 * 59.99340 * 1 2 3 27 27 H 1.08998 * 109.46993 * 60.00495 * 3 2 1 28 28 H 1.09004 * 109.47619 * 300.00254 * 3 2 1 29 29 H 1.08999 * 109.47047 * 305.83650 * 4 3 2 30 30 H 1.09003 * 109.47317 * 185.83160 * 4 3 2 31 31 H 0.97001 * 120.00193 * 179.97438 * 9 8 6 32 32 H 1.08002 * 120.00020 * 351.77454 * 16 14 5 33 33 H 1.07999 * 120.00029 * 169.07165 * 17 16 14 34 34 H 1.08007 * 120.08343 * 0.02562 * 19 18 17 35 35 H 1.07997 * 119.91193 * 180.29694 * 20 19 18 36 36 H 1.08000 * 119.82304 * 179.69388 * 21 20 19 37 37 H 1.08001 * 119.91186 * 180.02562 * 22 21 20 38 38 H 1.08008 * 120.08553 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9771 0.5825 -1.2611 6 6 4.1850 -0.7666 -1.3386 7 1 3.8713 -1.3117 -2.2164 8 6 4.8006 -1.4370 -0.2864 9 7 4.6965 -2.7424 -0.1890 10 14 5.7754 -0.4802 0.9880 11 1 4.8794 -0.0906 2.1064 12 1 6.8766 -1.3294 1.5088 13 1 6.3448 0.7400 0.3618 14 6 4.1785 1.3586 -2.3445 15 8 3.9929 2.5600 -2.2758 16 6 4.6198 0.7578 -3.6025 17 6 4.6672 1.5035 -4.7266 18 6 4.0546 2.8412 -4.7483 19 6 2.7970 3.0480 -4.1720 20 6 2.2324 4.3058 -4.1910 21 6 2.9012 5.3595 -4.7893 22 6 4.1435 5.1618 -5.3669 23 6 4.7242 3.9114 -5.3507 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6888 1.8462 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8506 0.5559 0.8322 30 1 3.9786 2.1750 0.1038 31 1 5.1260 -3.2099 0.5444 32 1 4.9120 -0.2816 -3.6313 33 1 5.1549 1.1185 -5.6099 34 1 2.2719 2.2257 -3.7087 35 1 1.2636 4.4681 -3.7422 36 1 2.4515 6.3413 -4.8054 37 1 4.6592 5.9892 -5.8315 38 1 5.6938 3.7588 -5.8014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493586994.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:52 Heat of formation + Delta-G solvation = -26.753379 kcal Electronic energy + Delta-G solvation = -21595.053124 eV Core-core repulsion = 18403.586147 eV Total energy + Delta-G solvation = -3191.466977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03711 -39.64393 -38.56977 -36.71752 -34.61541 -33.92481 -31.66565 -31.51024 -30.02039 -27.30133 -26.79275 -25.13921 -23.67728 -23.16333 -21.88444 -20.36682 -18.65074 -18.39370 -17.59470 -17.29444 -17.06298 -16.35176 -16.20023 -16.07020 -15.67725 -15.27365 -15.19203 -14.60235 -14.46028 -14.17853 -14.06755 -13.65692 -13.49780 -13.20798 -13.13733 -13.04965 -12.59814 -12.42459 -12.00920 -11.88669 -11.85982 -11.71545 -11.09075 -10.74422 -10.59345 -10.34814 -9.76193 -9.47065 -8.87012 -8.45663 -6.05411 -0.03924 0.71877 1.09407 1.21334 1.32132 1.40144 2.19253 2.49715 2.69386 2.89454 3.10722 3.17388 3.98470 4.03271 4.12548 4.14502 4.23092 4.31214 4.34988 4.36437 4.49261 4.52371 4.57600 4.70909 4.72989 4.78075 4.81600 4.86930 5.17562 5.25533 5.37451 5.43849 5.52864 5.73479 5.75397 5.90520 6.11303 6.26671 6.28711 6.36532 7.01482 7.47285 7.84142 8.68686 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.006427 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.391319 B = 4355.470259 C = 5083.200518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.064 3.936 4 C 0.089 3.911 5 N -0.457 5.457 6 C -0.318 4.318 7 H 0.076 0.924 8 C 0.032 3.968 9 N -0.897 5.897 10 Si 0.926 3.074 11 H -0.260 1.260 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.493 3.507 15 O -0.596 6.596 16 C -0.190 4.190 17 C -0.053 4.053 18 C -0.075 4.075 19 C -0.051 4.051 20 C -0.149 4.149 21 C -0.120 4.120 22 C -0.140 4.140 23 C -0.113 4.113 24 H 0.088 0.912 25 H 0.056 0.944 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.277 0.723 32 H 0.131 0.869 33 H 0.162 0.838 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.752 11.333 -5.487 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.014 4.014 4 C -0.034 4.034 5 N -0.176 5.176 6 C -0.447 4.447 7 H 0.094 0.906 8 C -0.172 4.172 9 N -0.534 5.534 10 Si 0.753 3.247 11 H -0.186 1.186 12 H -0.210 1.210 13 H -0.193 1.193 14 C 0.287 3.713 15 O -0.484 6.484 16 C -0.211 4.211 17 C -0.073 4.073 18 C -0.076 4.076 19 C -0.069 4.069 20 C -0.167 4.167 21 C -0.137 4.137 22 C -0.158 4.158 23 C -0.131 4.131 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.149 0.851 33 H 0.180 0.820 34 H 0.103 0.897 35 H 0.141 0.859 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.703 11.534 -5.288 13.217 hybrid contribution 0.186 -0.300 1.037 1.096 sum -3.517 11.233 -4.250 12.515 Atomic orbital electron populations 1.22868 0.80402 1.03211 1.00428 1.88125 1.20709 1.27708 1.95354 1.22753 0.93232 0.84927 1.00461 1.21898 0.94253 0.98908 0.88309 1.43657 1.57682 1.07032 1.09267 1.18714 1.38501 0.81307 1.06130 0.90639 1.25867 0.96527 0.95733 0.99103 1.69757 1.41906 1.09017 1.32705 0.86187 0.79120 0.79240 0.80196 1.18567 1.20999 1.19316 1.18848 0.80263 0.85973 0.86233 1.90716 1.57375 1.14744 1.85539 1.23127 1.04665 1.00700 0.92579 1.22618 0.94848 0.92146 0.97662 1.19111 0.94794 0.94239 0.99413 1.21010 0.94831 0.97120 0.93958 1.21103 1.00935 0.93040 1.01631 1.21427 0.95508 0.99024 0.97780 1.21269 0.96047 0.97265 1.01201 1.21457 0.99936 0.92571 0.99163 0.89357 0.92519 0.94082 0.90697 0.93946 0.91389 0.89439 0.91273 0.85077 0.82039 0.89689 0.85876 0.84040 0.83603 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -16.97 10.42 -148.98 -1.55 -18.52 16 3 C 0.06 2.49 6.25 71.98 0.45 2.94 16 4 C 0.09 3.96 4.35 86.38 0.38 4.34 16 5 N -0.46 -22.37 2.10 -640.56 -1.35 -23.71 16 6 C -0.32 -17.10 8.50 84.14 0.72 -16.38 16 7 H 0.08 4.37 7.20 -2.91 -0.02 4.35 16 8 C 0.03 1.72 5.34 84.98 0.45 2.17 16 9 N -0.90 -50.96 13.95 21.69 0.30 -50.66 16 10 Si 0.93 42.91 25.04 68.60 1.72 44.63 16 11 H -0.26 -11.35 6.53 99.48 0.65 -10.70 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 14 C 0.49 23.05 6.53 86.32 0.56 23.61 16 15 O -0.60 -28.28 11.86 -4.55 -0.05 -28.34 16 16 C -0.19 -7.80 9.12 23.60 0.22 -7.59 16 17 C -0.05 -1.78 9.81 23.86 0.23 -1.55 16 18 C -0.08 -2.61 4.54 -20.15 -0.09 -2.70 16 19 C -0.05 -1.85 6.62 22.58 0.15 -1.70 16 20 C -0.15 -4.65 10.03 22.23 0.22 -4.43 16 21 C -0.12 -3.15 10.04 22.35 0.22 -2.92 16 22 C -0.14 -3.57 10.03 22.23 0.22 -3.34 16 23 C -0.11 -3.26 9.80 22.58 0.22 -3.04 16 24 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.07 3.13 3.43 -2.39 -0.01 3.13 16 30 H 0.09 3.71 7.56 -2.39 -0.02 3.69 16 31 H 0.28 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.13 5.45 6.72 -2.91 -0.02 5.43 16 33 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.08 3.47 6.99 -2.91 -0.02 3.45 16 35 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 37 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 38 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -65.84 317.29 5.26 -60.57 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.99 Total: 24.54 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 5.21 Total: -8.50 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -1.05 Total: -74.38 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.61 Total: -46.86 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.72 Total: 44.63 kcal Total: -65.84 5.26 -60.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493586994.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.820 kcal (2) G-P(sol) polarization free energy of solvation -65.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds