Wall clock time and date at job start Mon Mar 30 2020 02:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00461 * 2 1 4 4 H 1.48502 * 109.46742 * 270.00192 * 3 2 1 5 5 H 1.48504 * 109.46822 * 29.99665 * 3 2 1 6 6 H 1.48495 * 109.47186 * 149.99941 * 3 2 1 7 7 C 1.37879 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00379 * 359.97438 * 7 2 1 10 10 C 1.53123 * 109.52570 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.27788 * 177.56259 * 10 9 7 12 12 N 1.46842 * 109.52190 * 300.81892 * 11 10 9 13 13 C 1.38459 * 110.99638 * 185.84170 * 12 11 10 14 14 C 1.39398 * 119.53584 * 180.02562 * 13 12 11 15 15 C 1.36856 * 119.37908 * 179.97438 * 14 13 12 16 16 C 1.40355 * 118.49401 * 359.97438 * 15 14 13 17 17 C 1.47534 * 120.47566 * 179.97438 * 16 15 14 18 18 N 1.34776 * 119.99816 * 180.02562 * 17 16 15 19 19 O 1.21589 * 120.00319 * 359.97438 * 17 16 15 20 20 C 1.39556 * 119.04537 * 0.02562 * 16 15 14 21 21 N 1.31685 * 120.52081 * 359.74532 * 20 16 15 22 22 C 1.46848 * 111.20069 * 61.74451 * 12 11 10 23 23 C 1.53032 * 109.52348 * 298.25721 * 22 12 11 24 24 H 0.97004 * 119.99991 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.57244 * 59.84439 * 9 7 2 26 26 H 1.09000 * 109.50367 * 57.61804 * 10 9 7 27 27 H 1.09006 * 109.50264 * 297.50143 * 10 9 7 28 28 H 1.09002 * 109.46126 * 60.83950 * 11 10 9 29 29 H 1.09000 * 109.45809 * 180.80452 * 11 10 9 30 30 H 1.08004 * 120.31530 * 359.95158 * 14 13 12 31 31 H 1.07999 * 120.75748 * 179.97438 * 15 14 13 32 32 H 0.96998 * 120.00093 * 359.97438 * 18 17 16 33 33 H 0.97001 * 120.00108 * 180.02562 * 18 17 16 34 34 H 1.08001 * 119.73966 * 179.97438 * 20 16 15 35 35 H 1.09003 * 109.46014 * 58.27448 * 22 12 11 36 36 H 1.08995 * 109.46374 * 178.23478 * 22 12 11 37 37 H 1.08996 * 109.50421 * 179.11872 * 23 22 12 38 38 H 1.08997 * 109.50237 * 299.24201 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2448 -3.6640 -0.0005 11 6 1.4749 -4.9852 0.0609 12 7 0.6541 -5.0186 1.2780 13 6 0.0450 -6.2525 1.4319 14 6 -0.7791 -6.4795 2.5330 15 6 -1.3800 -7.7001 2.6816 16 6 -1.1425 -8.6859 1.7113 17 6 -1.7674 -10.0172 1.8285 18 7 -1.5323 -10.9569 0.8914 19 8 -2.4938 -10.2670 2.7710 20 6 -0.3058 -8.3891 0.6345 21 7 0.2493 -7.1998 0.5269 22 6 -0.3396 -3.9374 1.2784 23 6 0.3761 -2.5850 1.2532 24 1 -0.4850 0.8401 -0.0004 25 1 0.6211 -2.5572 -0.8884 26 1 2.8996 -3.5837 0.8672 27 1 2.8420 -3.6329 -0.9119 28 1 0.8307 -5.0711 -0.8142 29 1 2.1802 -5.8161 0.0755 30 1 -0.9417 -5.6996 3.2623 31 1 -2.0224 -7.9002 3.5264 32 1 -0.9525 -10.7578 0.1397 33 1 -1.9434 -11.8321 0.9683 34 1 -0.1149 -9.1395 -0.1185 35 1 -0.9754 -4.0283 0.3976 36 1 -0.9523 -4.0076 2.1771 37 1 -0.3619 -1.7830 1.2377 38 1 1.0015 -2.4878 2.1406 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519860535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:31 Heat of formation + Delta-G solvation = -0.072212 kcal Electronic energy + Delta-G solvation = -20765.254562 eV Core-core repulsion = 17607.237319 eV Total energy + Delta-G solvation = -3158.017243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.87919 -39.36856 -37.72777 -34.35194 -33.87273 -32.63534 -31.75419 -29.99755 -29.56841 -26.08103 -24.13265 -23.74247 -22.04765 -21.69985 -20.71529 -18.80859 -18.40353 -17.33120 -17.05870 -16.33417 -15.89752 -15.16321 -15.05631 -14.62565 -14.46957 -14.10951 -13.79619 -13.25535 -13.22376 -12.93169 -12.69626 -12.38194 -12.33262 -11.53326 -11.14064 -10.95897 -10.57962 -10.45041 -10.35920 -10.15591 -10.02129 -9.96597 -9.84487 -9.56516 -9.41001 -9.04351 -8.81343 -8.37287 -7.91077 -6.04259 -4.09452 0.64277 1.27063 2.73871 3.28141 3.29577 3.35317 3.38655 3.65444 3.92882 4.33137 4.40659 4.71389 4.76274 5.04274 5.08530 5.26298 5.52882 5.58960 5.69272 5.82865 5.92081 6.01232 6.05339 6.20201 6.30800 6.36854 6.51046 6.52368 6.72753 6.83372 6.97060 7.06850 7.22595 7.28114 7.47725 7.67800 7.92224 7.94080 8.02952 8.04778 8.39494 8.93970 9.55634 11.02309 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052086 B = 0.003435 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.442330 B = 8149.648940 C = 8453.898048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.046 3.954 10 C -0.112 4.112 11 C 0.070 3.930 12 N -0.470 5.470 13 C 0.355 3.645 14 C -0.201 4.201 15 C 0.007 3.993 16 C -0.248 4.248 17 C 0.577 3.423 18 N -0.854 5.854 19 O -0.548 6.548 20 C 0.169 3.831 21 N -0.529 5.529 22 C 0.061 3.939 23 C -0.108 4.108 24 H 0.260 0.740 25 H 0.024 0.976 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.400 0.600 33 H 0.404 0.596 34 H 0.154 0.846 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 -16.806 1.050 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.027 3.973 10 C -0.150 4.150 11 C -0.056 4.056 12 N -0.185 5.185 13 C 0.122 3.878 14 C -0.224 4.224 15 C -0.019 4.019 16 C -0.255 4.255 17 C 0.363 3.637 18 N -0.418 5.418 19 O -0.426 6.426 20 C 0.008 3.992 21 N -0.243 5.243 22 C -0.063 4.063 23 C -0.146 4.146 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.230 0.770 33 H 0.234 0.766 34 H 0.171 0.829 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.924 -16.248 1.398 16.422 hybrid contribution -0.307 0.282 -0.218 0.470 sum -2.231 -15.966 1.180 16.165 Atomic orbital electron populations 1.69848 1.05886 1.26488 1.50948 1.24970 0.94863 0.99097 0.95068 0.86607 0.79913 0.83495 0.78069 1.20757 1.21267 1.19925 1.21176 0.92953 0.90467 1.50297 0.92607 1.18727 0.92736 0.91991 0.93832 1.21796 0.98877 0.93435 1.00899 1.22106 0.95832 0.99609 0.88096 1.58832 1.21270 1.00209 1.38139 1.20389 0.86938 0.91379 0.89112 1.21365 1.01762 0.99047 1.00213 1.21210 0.93695 0.90666 0.96318 1.20582 1.07518 0.96136 1.01297 1.18005 0.79807 0.84227 0.81633 1.43738 1.53423 1.16693 1.27940 1.90807 1.38234 1.81112 1.32463 1.22694 0.89480 0.92902 0.94074 1.67808 1.26587 1.02228 1.27724 1.22572 0.91978 0.91332 1.00386 1.21785 1.00598 0.92169 1.00033 0.92983 0.95766 0.92390 0.92384 0.93614 0.90942 0.83829 0.83821 0.77038 0.76550 0.82909 0.93979 0.91302 0.88045 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.53 11.37 55.43 0.63 -23.90 16 2 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 3 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.52 8.56 -34.44 -0.29 -13.81 16 8 H 0.06 1.47 7.75 -52.48 -0.41 1.06 16 9 C 0.05 1.08 2.16 -91.65 -0.20 0.88 16 10 C -0.11 -2.26 5.32 -26.65 -0.14 -2.40 16 11 C 0.07 1.25 4.64 -3.84 -0.02 1.23 16 12 N -0.47 -8.23 4.66 -173.28 -0.81 -9.04 16 13 C 0.36 5.58 6.40 -155.28 -0.99 4.59 16 14 C -0.20 -2.75 9.10 -39.65 -0.36 -3.11 16 15 C 0.01 0.09 9.65 -39.29 -0.38 -0.29 16 16 C -0.25 -2.97 5.89 -104.82 -0.62 -3.59 16 17 C 0.58 6.64 8.04 -12.47 -0.10 6.53 16 18 N -0.85 -5.89 8.83 30.46 0.27 -5.62 16 19 O -0.55 -8.32 17.24 5.29 0.09 -8.23 16 20 C 0.17 1.94 10.71 -17.12 -0.18 1.76 16 21 N -0.53 -7.78 8.64 -12.14 -0.10 -7.88 16 22 C 0.06 1.12 5.24 -3.84 -0.02 1.10 16 23 C -0.11 -2.37 5.12 -26.65 -0.14 -2.51 16 24 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 25 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 29 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 30 H 0.14 1.79 7.12 -52.48 -0.37 1.42 16 31 H 0.14 1.66 7.73 -52.49 -0.41 1.26 16 32 H 0.40 1.69 6.88 -40.82 -0.28 1.41 16 33 H 0.40 2.19 8.93 -40.82 -0.36 1.83 16 34 H 0.15 1.12 6.41 -52.49 -0.34 0.78 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.11 6.64 -51.93 -0.34 0.76 16 37 H 0.10 2.49 6.17 -51.93 -0.32 2.17 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -30.77 310.19 -8.71 -39.48 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.90 Total: 2.85 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -3.54 Total: -8.08 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.01 Total: -46.44 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.77 -8.71 -39.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519860535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.409 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds