Wall clock time and date at job start Mon Mar 30 2020 01:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 119.99581 * 2 1 4 4 H 1.48499 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47205 * 300.00108 * 3 2 1 6 6 H 1.48506 * 109.47014 * 60.00022 * 3 2 1 7 7 C 1.38951 * 120.00669 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00165 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99714 * 359.97438 * 7 2 1 10 10 C 1.34765 * 119.99995 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00239 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00192 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47067 * 180.02562 * 12 10 9 14 14 C 1.47841 * 111.00102 * 55.82485 * 13 12 10 15 15 C 1.54905 * 104.79818 * 146.36250 * 14 13 12 16 16 C 1.55400 * 101.74050 * 323.01764 * 15 14 13 17 17 C 1.47447 * 110.99970 * 176.66720 * 13 12 10 18 18 H 1.08995 * 109.89262 * 117.17144 * 17 13 12 19 19 C 1.50704 * 109.88477 * 356.14528 * 17 13 12 20 20 C 1.38227 * 119.61495 * 78.01841 * 19 17 13 21 21 C 1.38631 * 119.16230 * 180.02562 * 20 19 17 22 22 C 1.38675 * 118.41903 * 0.02562 * 21 20 19 23 23 C 1.38181 * 119.16227 * 359.97438 * 22 21 20 24 24 N 1.31848 * 119.62002 * 258.03575 * 19 17 13 25 25 H 0.96995 * 120.00663 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00212 * 0.02562 * 9 7 2 27 27 H 1.09008 * 109.46758 * 60.00397 * 12 10 9 28 28 H 1.08993 * 109.47174 * 300.00301 * 12 10 9 29 29 H 1.09000 * 110.37591 * 265.19268 * 14 13 12 30 30 H 1.08998 * 110.37393 * 27.41772 * 14 13 12 31 31 H 1.08998 * 110.99284 * 81.01857 * 15 14 13 32 32 H 1.09003 * 110.99255 * 204.80461 * 15 14 13 33 33 H 1.09000 * 110.67726 * 277.17480 * 16 15 14 34 34 H 1.09004 * 110.84751 * 153.86393 * 16 15 14 35 35 H 1.08002 * 120.42117 * 0.04273 * 20 19 17 36 36 H 1.08002 * 120.79174 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.42049 * 179.97438 * 22 21 20 38 38 H 1.07995 * 119.61983 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3966 -1.2125 6 1 1.8892 2.3965 1.2126 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0016 11 8 3.2105 -3.5576 -0.0021 12 6 1.2441 -4.8629 -0.0010 13 7 2.1988 -5.9794 -0.0017 14 6 3.1333 -5.8782 1.1394 15 6 3.4276 -7.3450 1.5411 16 6 2.0453 -8.0182 1.3149 17 6 1.4979 -7.2741 0.0788 18 1 1.6918 -7.8574 -0.8212 19 6 0.0161 -7.0461 0.2324 20 6 -0.7402 -6.7027 -0.8725 21 6 -2.1024 -6.4947 -0.7204 22 6 -2.6552 -6.6398 0.5430 23 6 -1.8360 -6.9851 1.6009 24 7 -0.5437 -7.1760 1.4190 25 1 -0.4851 0.8399 0.0004 26 1 0.3536 -2.3907 -0.0005 27 1 0.6165 -4.9205 -0.8904 28 1 0.6185 -4.9209 0.8896 29 1 4.0518 -5.3767 0.8345 30 1 2.6662 -5.3430 1.9661 31 1 4.1842 -7.7837 0.8906 32 1 3.7288 -7.4107 2.5866 33 1 1.3963 -7.8634 2.1768 34 1 2.1614 -9.0814 1.1046 35 1 -0.2760 -6.5982 -1.8420 36 1 -2.7184 -6.2259 -1.5659 37 1 -3.7127 -6.4850 0.6983 38 1 -2.2586 -7.0997 2.5880 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531201690.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:57 Heat of formation + Delta-G solvation = 16.876907 kcal Electronic energy + Delta-G solvation = -21468.082351 eV Core-core repulsion = 18310.800076 eV Total energy + Delta-G solvation = -3157.282274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.77617 -38.70456 -37.33399 -33.92855 -32.59089 -32.22091 -31.37622 -31.08377 -27.96749 -26.61054 -24.21634 -23.69344 -23.11328 -20.87212 -20.09750 -19.07028 -17.86134 -16.90324 -16.44898 -16.03570 -15.80427 -15.06993 -14.79367 -14.37704 -14.26299 -13.87112 -13.66041 -13.39685 -13.24281 -12.74981 -12.50516 -12.03866 -11.94503 -11.71383 -11.49800 -11.13254 -11.07788 -10.92415 -10.67103 -10.44595 -10.32015 -10.20927 -9.83114 -9.48421 -9.37056 -8.99246 -8.31612 -7.96020 -7.85138 -6.40082 -3.80710 1.07027 1.28299 3.17211 3.27479 3.34979 3.72178 3.94050 4.13018 4.19157 4.35703 4.67641 4.80602 4.89176 4.99811 5.08780 5.17927 5.23340 5.26418 5.38635 5.55426 5.67455 5.71454 5.78473 5.85666 5.96571 6.05120 6.12529 6.15928 6.17658 6.26914 6.35099 6.54831 6.68655 6.71766 7.32380 7.35296 7.56895 7.98894 8.08105 8.63533 9.19773 9.56138 10.08048 10.77885 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018661 B = 0.005463 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.102114 B = 5124.070364 C = 6225.102575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.039 3.961 13 N -0.491 5.491 14 C 0.057 3.943 15 C -0.134 4.134 16 C -0.134 4.134 17 C 0.115 3.885 18 H 0.098 0.902 19 C 0.121 3.879 20 C -0.160 4.160 21 C -0.074 4.074 22 C -0.176 4.176 23 C 0.097 3.903 24 N -0.477 5.477 25 H 0.270 0.730 26 H 0.391 0.609 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.101 0.899 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 -15.212 0.958 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.229 3.771 11 O -0.463 6.463 12 C -0.093 4.093 13 N -0.215 5.215 14 C -0.070 4.070 15 C -0.172 4.172 16 C -0.173 4.173 17 C 0.007 3.993 18 H 0.116 0.884 19 C -0.018 4.018 20 C -0.181 4.181 21 C -0.100 4.100 22 C -0.196 4.196 23 C -0.060 4.060 24 N -0.187 5.187 25 H 0.080 0.920 26 H 0.224 0.776 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.808 -15.226 1.199 15.741 hybrid contribution -1.560 1.222 -0.046 1.982 sum -5.368 -14.004 1.153 15.042 Atomic orbital electron populations 1.69622 1.05955 1.27991 1.50850 1.25261 0.95627 0.99707 0.97409 0.85804 0.79729 0.81155 0.77681 1.19197 1.20749 1.20790 1.19756 0.93387 0.82179 1.47325 0.87833 1.41846 1.09117 1.04585 1.64497 1.19753 0.88390 0.84639 0.84325 1.90489 1.13619 1.86948 1.55254 1.22251 0.94639 0.91240 1.01140 1.63739 1.15130 0.99237 1.43443 1.23062 0.98022 0.95071 0.90849 1.22834 0.96909 0.96292 1.01134 1.22868 0.96903 0.98804 0.98679 1.21594 0.85589 0.92578 0.99572 0.88396 1.21606 0.97128 0.94371 0.88693 1.22027 0.94572 1.00941 1.00532 1.21592 0.94962 0.95729 0.97724 1.22116 1.01493 1.02004 0.93992 1.22733 0.89086 0.95060 0.99123 1.67459 1.12535 1.14179 1.24514 0.91973 0.77614 0.89338 0.93516 0.88074 0.94149 0.91061 0.91169 0.88959 0.91444 0.84450 0.84759 0.84938 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 13.05 55.50 0.72 -24.24 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 9 N -0.56 -14.80 5.29 -10.96 -0.06 -14.86 16 10 C 0.44 10.93 7.44 -10.99 -0.08 10.85 16 11 O -0.58 -15.86 13.61 5.54 0.08 -15.78 16 12 C 0.04 0.76 4.15 -4.97 -0.02 0.74 16 13 N -0.49 -8.79 5.10 -226.15 -1.15 -9.95 16 14 C 0.06 1.03 5.19 -2.30 -0.01 1.02 16 15 C -0.13 -1.83 7.08 -24.45 -0.17 -2.00 16 16 C -0.13 -1.76 6.39 -24.77 -0.16 -1.92 16 17 C 0.12 1.67 3.65 -67.87 -0.25 1.42 16 18 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 19 C 0.12 1.71 3.99 -82.59 -0.33 1.39 16 20 C -0.16 -2.04 7.57 -39.44 -0.30 -2.33 16 21 C -0.07 -0.83 10.18 -39.27 -0.40 -1.23 16 22 C -0.18 -1.88 10.11 -39.44 -0.40 -2.28 16 23 C 0.10 1.16 11.18 -17.55 -0.20 0.96 16 24 N -0.48 -6.80 8.32 -9.47 -0.08 -6.88 16 25 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.39 9.95 7.90 -40.82 -0.32 9.62 16 27 H 0.09 1.61 5.91 -51.92 -0.31 1.30 16 28 H 0.05 0.93 6.99 -51.93 -0.36 0.57 16 29 H 0.10 2.06 6.84 -51.93 -0.36 1.70 16 30 H 0.04 0.79 7.73 -51.93 -0.40 0.39 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.31 6.55 -51.93 -0.34 0.97 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.14 1.59 7.87 -52.49 -0.41 1.18 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 310.35 15.07 4.68 4.68 Total: -1.00 -31.88 310.35 -8.37 -40.25 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -4.97 Total: 11.99 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.56 Total: -1.50 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.57 Total: -55.93 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.08 Total: -15.78 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.88 -8.37 -40.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531201690.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.123 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds