Wall clock time and date at job start Mon Mar 30 2020 01:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 119.99581 * 2 1 4 4 H 1.48499 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47205 * 300.00108 * 3 2 1 6 6 H 1.48506 * 109.47014 * 60.00022 * 3 2 1 7 7 C 1.38951 * 120.00669 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00165 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99714 * 359.97438 * 7 2 1 10 10 C 1.34765 * 119.99995 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00239 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00192 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47067 * 180.02562 * 12 10 9 14 14 C 1.47841 * 111.00102 * 55.82485 * 13 12 10 15 15 C 1.54905 * 104.79818 * 146.36250 * 14 13 12 16 16 C 1.55400 * 101.74050 * 323.01764 * 15 14 13 17 17 C 1.47447 * 110.99970 * 176.66720 * 13 12 10 18 18 H 1.08995 * 109.89262 * 117.17144 * 17 13 12 19 19 C 1.50704 * 109.88477 * 356.14528 * 17 13 12 20 20 C 1.38227 * 119.61495 * 78.01841 * 19 17 13 21 21 C 1.38631 * 119.16230 * 180.02562 * 20 19 17 22 22 C 1.38675 * 118.41903 * 0.02562 * 21 20 19 23 23 C 1.38181 * 119.16227 * 359.97438 * 22 21 20 24 24 N 1.31848 * 119.62002 * 258.03575 * 19 17 13 25 25 H 0.96995 * 120.00663 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00212 * 0.02562 * 9 7 2 27 27 H 1.09008 * 109.46758 * 60.00397 * 12 10 9 28 28 H 1.08993 * 109.47174 * 300.00301 * 12 10 9 29 29 H 1.09000 * 110.37591 * 265.19268 * 14 13 12 30 30 H 1.08998 * 110.37393 * 27.41772 * 14 13 12 31 31 H 1.08998 * 110.99284 * 81.01857 * 15 14 13 32 32 H 1.09003 * 110.99255 * 204.80461 * 15 14 13 33 33 H 1.09000 * 110.67726 * 277.17480 * 16 15 14 34 34 H 1.09004 * 110.84751 * 153.86393 * 16 15 14 35 35 H 1.08002 * 120.42117 * 0.04273 * 20 19 17 36 36 H 1.08002 * 120.79174 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.42049 * 179.97438 * 22 21 20 38 38 H 1.07995 * 119.61983 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3966 -1.2125 6 1 1.8892 2.3965 1.2126 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0016 11 8 3.2105 -3.5576 -0.0021 12 6 1.2441 -4.8629 -0.0010 13 7 2.1988 -5.9794 -0.0017 14 6 3.1333 -5.8782 1.1394 15 6 3.4276 -7.3450 1.5411 16 6 2.0453 -8.0182 1.3149 17 6 1.4979 -7.2741 0.0788 18 1 1.6918 -7.8574 -0.8212 19 6 0.0161 -7.0461 0.2324 20 6 -0.7402 -6.7027 -0.8725 21 6 -2.1024 -6.4947 -0.7204 22 6 -2.6552 -6.6398 0.5430 23 6 -1.8360 -6.9851 1.6009 24 7 -0.5437 -7.1760 1.4190 25 1 -0.4851 0.8399 0.0004 26 1 0.3536 -2.3907 -0.0005 27 1 0.6165 -4.9205 -0.8904 28 1 0.6185 -4.9209 0.8896 29 1 4.0518 -5.3767 0.8345 30 1 2.6662 -5.3430 1.9661 31 1 4.1842 -7.7837 0.8906 32 1 3.7288 -7.4107 2.5866 33 1 1.3963 -7.8634 2.1768 34 1 2.1614 -9.0814 1.1046 35 1 -0.2760 -6.5982 -1.8420 36 1 -2.7184 -6.2259 -1.5659 37 1 -3.7127 -6.4850 0.6983 38 1 -2.2586 -7.0997 2.5880 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531201690.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:57 Heat of formation + Delta-G solvation = -5.856525 kcal Electronic energy + Delta-G solvation = -21469.068146 eV Core-core repulsion = 18310.800076 eV Total energy + Delta-G solvation = -3158.268070 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.87222 -40.26258 -38.89206 -36.00117 -33.70178 -33.41313 -33.08467 -32.51635 -29.08884 -28.32956 -26.10954 -24.62391 -24.14178 -22.19807 -21.42590 -20.77071 -19.88104 -18.14048 -17.83047 -17.14303 -16.99351 -16.63443 -16.28581 -15.99875 -15.83336 -15.56813 -14.92994 -14.48891 -14.37183 -14.09940 -14.04095 -13.58138 -13.40711 -13.17865 -12.91327 -12.88711 -12.44297 -12.29015 -12.14223 -12.11317 -11.94207 -11.57945 -11.51213 -10.76671 -10.33021 -10.31826 -10.04998 -9.86284 -9.33992 -8.49710 -5.98979 0.14418 0.38770 1.34449 1.39816 1.54575 1.98142 2.26102 2.67615 2.95537 3.16185 3.21299 3.32714 3.73574 3.84532 3.87688 4.08860 4.18002 4.25326 4.27525 4.27652 4.36036 4.42935 4.50080 4.64639 4.71101 4.83697 4.97887 5.02217 5.12127 5.23694 5.25267 5.29850 5.38144 5.46005 5.77477 5.83946 5.97900 6.06420 6.55344 7.05210 7.08485 7.49291 8.04863 8.68203 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018661 B = 0.005463 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.102114 B = 5124.070364 C = 6225.102575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.611 6.611 12 C 0.063 3.937 13 N -0.504 5.504 14 C 0.057 3.943 15 C -0.121 4.121 16 C -0.125 4.125 17 C 0.113 3.887 18 H 0.115 0.885 19 C 0.099 3.901 20 C -0.172 4.172 21 C -0.078 4.078 22 C -0.170 4.170 23 C 0.082 3.918 24 N -0.500 5.500 25 H 0.278 0.722 26 H 0.393 0.607 27 H 0.105 0.895 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.014 0.986 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.144 0.856 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.678 -15.858 0.748 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.209 5.209 10 C 0.225 3.775 11 O -0.497 6.497 12 C -0.069 4.069 13 N -0.228 5.228 14 C -0.071 4.071 15 C -0.159 4.159 16 C -0.163 4.163 17 C 0.005 3.995 18 H 0.133 0.867 19 C -0.039 4.039 20 C -0.192 4.192 21 C -0.104 4.104 22 C -0.190 4.190 23 C -0.075 4.075 24 N -0.210 5.210 25 H 0.088 0.912 26 H 0.227 0.773 27 H 0.123 0.877 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.032 0.968 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.162 0.838 36 H 0.178 0.822 37 H 0.181 0.819 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.202 -15.895 0.986 16.754 hybrid contribution -1.204 1.387 0.028 1.837 sum -6.406 -14.508 1.014 15.892 Atomic orbital electron populations 1.69681 1.06910 1.29317 1.50263 1.26080 0.96571 1.02477 0.96122 0.84842 0.78013 0.76869 0.78421 1.19753 1.19362 1.19544 1.19719 0.92720 0.83832 1.49987 0.90197 1.41906 1.09130 1.04745 1.65072 1.20688 0.88360 0.85915 0.82581 1.90468 1.15307 1.87716 1.56221 1.21989 0.94127 0.89073 1.01695 1.63691 1.15408 1.00231 1.43452 1.22915 0.96541 0.97582 0.90030 1.22786 0.97858 0.93021 1.02244 1.22819 0.95785 1.00035 0.97689 1.21693 0.86127 0.90698 1.00948 0.86744 1.21539 0.96925 0.96092 0.89363 1.22197 0.95477 1.01116 1.00446 1.21974 0.94622 0.94858 0.98905 1.22491 1.02892 1.00245 0.93362 1.23218 0.88640 0.94905 1.00708 1.67414 1.13832 1.14987 1.24751 0.91225 0.77349 0.87701 0.93757 0.91287 0.96760 0.89675 0.89741 0.90002 0.88795 0.83795 0.82226 0.81937 0.80820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.59 13.05 21.66 0.28 -50.30 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.33 -19.48 9.68 84.04 0.81 -18.67 16 8 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 9 N -0.57 -30.91 5.29 -306.99 -1.62 -32.53 16 10 C 0.44 22.31 7.44 87.66 0.65 22.96 16 11 O -0.61 -35.03 13.61 -3.08 -0.04 -35.07 16 12 C 0.06 2.48 4.15 85.56 0.36 2.84 16 13 N -0.50 -18.13 5.10 -869.42 -4.44 -22.57 16 14 C 0.06 2.11 5.19 86.77 0.45 2.56 16 15 C -0.12 -3.21 7.08 32.07 0.23 -2.98 16 16 C -0.12 -3.09 6.39 31.87 0.20 -2.89 16 17 C 0.11 3.15 3.65 44.51 0.16 3.31 16 18 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 19 C 0.10 2.70 3.99 42.55 0.17 2.87 16 20 C -0.17 -4.09 7.57 22.36 0.17 -3.93 16 21 C -0.08 -1.54 10.18 22.47 0.23 -1.31 16 22 C -0.17 -3.18 10.11 22.36 0.23 -2.96 16 23 C 0.08 1.81 11.18 84.67 0.95 2.75 16 24 N -0.50 -13.68 8.32 -183.89 -1.53 -15.21 16 25 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 26 H 0.39 20.45 7.90 -92.71 -0.73 19.71 16 27 H 0.11 3.79 5.91 -2.38 -0.01 3.77 16 28 H 0.04 1.79 6.99 -2.39 -0.02 1.78 16 29 H 0.07 2.97 6.84 -2.39 -0.02 2.96 16 30 H 0.01 0.58 7.73 -2.39 -0.02 0.56 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 2.23 6.55 -2.39 -0.02 2.22 16 34 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.14 3.12 7.87 -2.91 -0.02 3.09 16 36 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -70.20 310.35 0.10 -70.10 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.35 Total: 35.64 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 5.07 Total: 4.33 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -7.31 Total: -120.62 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.04 Total: -35.07 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -70.20 0.10 -70.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531201690.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.246 kcal (2) G-P(sol) polarization free energy of solvation -70.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds