Wall clock time and date at job start Mon Mar 30 2020 01:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00188 * 2 1 4 4 C 1.53003 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.46501 * 115.54671 * 29.38276 * 4 3 2 6 6 C 1.34773 * 120.00508 * 80.48929 * 5 4 3 7 7 O 1.21549 * 119.99605 * 4.69497 * 6 5 4 8 8 C 1.47883 * 120.00272 * 184.69059 * 6 5 4 9 9 C 1.39915 * 120.02647 * 0.02562 * 8 6 5 10 10 C 1.38327 * 120.36250 * 179.97438 * 9 8 6 11 11 C 1.37753 * 120.40663 * 0.02562 * 10 9 8 12 12 C 1.40742 * 120.04328 * 0.02562 * 11 10 9 13 13 C 1.41440 * 120.18112 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99677 * 28.70580 * 13 12 11 15 15 C 1.39932 * 120.00202 * 208.71077 * 13 12 11 16 16 N 1.30828 * 120.00093 * 9.87177 * 15 13 12 17 17 Si 1.86803 * 119.99969 * 189.87023 * 15 13 12 18 18 H 1.48495 * 109.47338 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46918 * 120.00011 * 17 15 13 20 20 H 1.48502 * 109.47021 * 239.99906 * 17 15 13 21 21 C 1.38999 * 120.02562 * 179.72583 * 8 6 5 22 22 C 1.52999 * 117.50031 * 175.04539 * 4 3 2 23 23 C 1.53005 * 60.02841 * 107.50523 * 22 4 3 24 24 H 1.09004 * 109.47225 * 300.00456 * 1 2 3 25 25 H 1.09000 * 109.46861 * 60.00170 * 1 2 3 26 26 H 1.08996 * 109.47389 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47275 * 59.99986 * 3 2 1 28 28 H 1.09003 * 109.47020 * 299.99932 * 3 2 1 29 29 H 0.97002 * 119.99895 * 260.48934 * 5 4 3 30 30 H 1.08001 * 119.81987 * 0.02562 * 9 8 6 31 31 H 1.07998 * 119.79579 * 180.02562 * 10 9 8 32 32 H 1.08011 * 119.97914 * 180.02562 * 11 10 9 33 33 H 0.97004 * 119.99920 * 180.02562 * 16 15 13 34 34 H 1.08003 * 120.20158 * 0.02562 * 21 8 6 35 35 H 1.09000 * 117.49981 * 215.00061 * 22 4 3 36 36 H 1.09004 * 117.49991 * 0.02562 * 22 4 3 37 37 H 1.08997 * 117.49668 * 107.50385 * 23 22 4 38 38 H 1.08998 * 117.49745 * 252.52074 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.0746 -0.0136 -0.6474 6 6 4.1885 -0.0605 -1.9895 7 8 3.9247 0.9208 -2.6564 8 6 4.6344 -1.3058 -2.6508 9 6 4.9378 -2.4359 -1.8836 10 6 5.3551 -3.6046 -2.4949 11 6 5.4773 -3.6693 -3.8655 12 6 5.1776 -2.5424 -4.6536 13 6 5.3026 -2.6054 -6.0611 14 1 5.1675 -3.5465 -6.5736 15 6 5.6014 -1.4486 -6.7895 16 7 5.9546 -0.3549 -6.1644 17 14 5.4961 -1.4660 -8.6545 18 1 5.0769 -2.8143 -9.1141 19 1 4.5013 -0.4590 -9.1035 20 1 6.8259 -1.1381 -9.2284 21 6 4.7466 -1.3565 -4.0353 22 6 4.3466 2.4766 -0.1165 23 6 4.2875 1.7294 1.2174 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 4.3496 -0.7733 -0.1106 30 1 4.8449 -2.3959 -0.8084 31 1 5.5864 -4.4715 -1.8939 32 1 5.8033 -4.5854 -4.3356 33 1 6.1613 0.4471 -6.6694 34 1 4.5092 -0.4879 -4.6317 35 1 5.2814 2.4351 -0.6755 36 1 3.7936 3.4127 -0.1936 37 1 5.1834 1.1964 1.5358 38 1 3.6954 2.1738 2.0174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531981806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:40 Heat of formation + Delta-G solvation = -55.608061 kcal Electronic energy + Delta-G solvation = -20976.294163 eV Core-core repulsion = 17783.575953 eV Total energy + Delta-G solvation = -3192.718210 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.12443 -39.45245 -38.52994 -37.53420 -35.59637 -33.93609 -31.67008 -31.24032 -29.12227 -27.21828 -26.46782 -24.80245 -23.49160 -22.81767 -21.63169 -20.59884 -19.47678 -18.15970 -17.64418 -16.96857 -16.93212 -16.67989 -16.40510 -16.17206 -15.55132 -15.34315 -15.04762 -14.81083 -14.41041 -14.26584 -13.60574 -13.50341 -13.27580 -12.92426 -12.80935 -12.52940 -12.44040 -12.33854 -12.18796 -11.93920 -11.78076 -11.51099 -11.22385 -11.13181 -10.76246 -10.43164 -10.08168 -9.44664 -9.34613 -8.59937 -6.40759 0.39884 1.01015 1.36203 1.45936 1.52459 2.10522 2.18106 2.21250 2.64412 2.80877 2.83105 3.68750 3.81617 3.85060 3.93158 4.18091 4.31446 4.40876 4.44695 4.49183 4.56330 4.61942 4.70254 4.71793 4.81726 4.90647 4.96047 5.09774 5.17255 5.19057 5.33069 5.52500 5.62405 5.87085 5.92391 6.06676 6.22115 6.29104 6.53796 6.72726 6.89582 6.95154 7.39962 8.35935 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.004781 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.832463 B = 5854.914073 C = 6153.213521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.095 3.905 4 C 0.068 3.932 5 N -0.675 5.675 6 C 0.566 3.434 7 O -0.583 6.583 8 C -0.141 4.141 9 C -0.190 4.190 10 C -0.100 4.100 11 C -0.211 4.211 12 C 0.065 3.935 13 C -0.499 4.499 14 H 0.083 0.917 15 C 0.025 3.975 16 N -0.837 5.837 17 Si 0.987 3.013 18 H -0.251 1.251 19 H -0.271 1.271 20 H -0.264 1.264 21 C -0.123 4.123 22 C -0.170 4.170 23 C -0.130 4.130 24 H 0.065 0.935 25 H 0.033 0.967 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.033 0.967 29 H 0.411 0.589 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.110 0.890 33 H 0.284 0.716 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.849 2.702 14.540 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C 0.017 3.983 4 C -0.020 4.020 5 N -0.327 5.327 6 C 0.356 3.644 7 O -0.464 6.464 8 C -0.145 4.145 9 C -0.210 4.210 10 C -0.117 4.117 11 C -0.231 4.231 12 C 0.063 3.937 13 C -0.529 4.529 14 H 0.101 0.899 15 C -0.188 4.188 16 N -0.464 5.464 17 Si 0.807 3.193 18 H -0.174 1.174 19 H -0.196 1.196 20 H -0.189 1.189 21 C -0.144 4.144 22 C -0.207 4.207 23 C -0.167 4.167 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.051 0.949 29 H 0.249 0.751 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.866 3.452 14.054 15.615 hybrid contribution 0.025 0.114 -1.119 1.125 sum -5.841 3.566 12.935 14.634 Atomic orbital electron populations 1.22904 0.79692 1.03676 1.00651 1.87883 1.21166 1.27881 1.95504 1.22296 0.90052 0.85059 1.00892 1.20839 0.90938 0.87633 1.02577 1.44859 1.64647 1.18082 1.05106 1.18672 0.75811 0.87438 0.82453 1.90646 1.52297 1.37985 1.65458 1.19847 1.06118 0.94115 0.94388 1.20884 1.08693 0.92735 0.98669 1.20933 0.99004 0.97691 0.94113 1.21475 1.08269 0.99087 0.94264 1.17973 0.89637 0.91736 0.94401 1.19884 1.44573 0.96196 0.92208 0.89890 1.26861 0.91604 0.93990 1.06355 1.69893 1.33735 1.02741 1.40022 0.85088 0.78868 0.79715 0.75596 1.17429 1.19611 1.18902 1.21495 1.00791 0.99350 0.92730 1.23243 1.01260 0.95371 1.00873 1.23608 1.02077 1.00395 0.90657 0.91609 0.94826 0.88850 0.88788 0.94859 0.75074 0.84861 0.84256 0.87158 0.90561 0.88236 0.90629 0.86629 0.87191 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -11.84 10.23 -148.98 -1.52 -13.36 16 3 C 0.09 2.49 6.18 71.98 0.45 2.94 16 4 C 0.07 1.91 2.14 3.63 0.01 1.91 16 5 N -0.68 -23.34 4.87 -425.62 -2.07 -25.41 16 6 C 0.57 26.27 7.70 86.80 0.67 26.94 16 7 O -0.58 -31.36 15.90 -3.87 -0.06 -31.42 16 8 C -0.14 -7.02 5.87 -20.13 -0.12 -7.14 16 9 C -0.19 -7.86 9.55 22.70 0.22 -7.64 16 10 C -0.10 -4.08 10.01 22.18 0.22 -3.86 16 11 C -0.21 -10.14 9.78 22.77 0.22 -9.92 16 12 C 0.06 3.62 5.55 -21.32 -0.12 3.50 16 13 C -0.50 -27.92 9.06 23.47 0.21 -27.70 16 14 H 0.08 4.38 7.87 -2.91 -0.02 4.36 16 15 C 0.02 1.34 5.27 85.25 0.45 1.79 16 16 N -0.84 -48.22 10.81 21.82 0.24 -47.98 16 17 Si 0.99 40.78 29.57 68.60 2.03 42.81 16 18 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 21 C -0.12 -7.09 8.20 23.01 0.19 -6.91 16 22 C -0.17 -4.44 9.56 30.60 0.29 -4.14 16 23 C -0.13 -2.42 10.11 30.62 0.31 -2.11 16 24 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.03 0.74 8.14 -2.39 -0.02 0.73 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.09 1.68 7.88 -2.39 -0.02 1.66 16 28 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.41 12.13 6.86 -92.71 -0.64 11.50 16 30 H 0.13 4.31 6.39 -2.91 -0.02 4.29 16 31 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 32 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 33 H 0.28 15.06 8.30 -92.71 -0.77 14.29 16 34 H 0.10 6.40 5.79 -2.91 -0.02 6.39 16 35 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.12 2.58 8.14 -2.38 -0.02 2.56 16 37 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.14 1.62 8.03 -2.39 -0.02 1.60 16 Total: -1.00 -73.65 326.91 3.29 -70.36 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: 0.44 Total: 35.52 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 4.25 Total: -30.52 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -1.84 Total: -73.40 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.59 Total: -44.78 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -73.65 3.29 -70.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531981806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.755 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds