Wall clock time and date at job start Mon Mar 30 2020 01:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99880 * 2 1 4 4 C 1.52998 * 109.47041 * 179.97438 * 3 2 1 5 5 N 1.46498 * 115.55148 * 58.85332 * 4 3 2 6 6 C 1.34783 * 119.99689 * 65.42739 * 5 4 3 7 7 O 1.21584 * 119.99972 * 4.86193 * 6 5 4 8 8 C 1.47643 * 119.99576 * 184.86226 * 6 5 4 9 9 C 1.40013 * 119.89699 * 359.73161 * 8 6 5 10 10 C 1.36322 * 120.10559 * 179.71882 * 9 8 6 11 11 C 1.40888 * 119.88985 * 0.56917 * 10 9 8 12 12 C 1.41104 * 120.10320 * 179.67567 * 11 10 9 13 13 H 1.07998 * 120.00221 * 208.30969 * 12 11 10 14 14 C 1.40226 * 119.99848 * 28.31440 * 12 11 10 15 15 N 1.30643 * 120.00333 * 8.64499 * 14 12 11 16 16 Si 1.86804 * 119.99915 * 188.64258 * 14 12 11 17 17 H 1.48505 * 109.46827 * 90.00102 * 16 14 12 18 18 H 1.48501 * 109.47068 * 209.99775 * 16 14 12 19 19 H 1.48496 * 109.47265 * 330.00108 * 16 14 12 20 20 C 1.40890 * 119.79502 * 359.70089 * 11 10 9 21 21 C 1.36315 * 119.89103 * 359.97438 * 20 11 10 22 22 C 1.53005 * 117.49907 * 273.18515 * 4 3 2 23 23 C 1.53002 * 117.49942 * 204.52488 * 4 3 2 24 24 H 1.08991 * 109.47392 * 299.99750 * 1 2 3 25 25 H 1.09002 * 109.46983 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46856 * 59.99985 * 1 2 3 27 27 H 1.09001 * 109.47601 * 300.00200 * 3 2 1 28 28 H 1.09004 * 109.46729 * 60.00318 * 3 2 1 29 29 H 0.96996 * 120.00160 * 245.43266 * 5 4 3 30 30 H 1.07997 * 119.94759 * 359.97438 * 9 8 6 31 31 H 1.07994 * 120.05497 * 180.25061 * 10 9 8 32 32 H 0.97002 * 120.00557 * 180.02562 * 15 14 12 33 33 H 1.08000 * 120.05509 * 179.97438 * 20 11 10 34 34 H 1.08003 * 119.95347 * 179.97438 * 21 20 11 35 35 H 1.08998 * 117.49667 * 359.97438 * 22 4 3 36 36 H 1.08996 * 117.49902 * 145.02363 * 22 4 3 37 37 H 1.08992 * 117.50010 * 214.98014 * 23 4 3 38 38 H 1.09000 * 117.49469 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1119 0.4531 -1.1302 6 6 4.0039 0.9488 -2.3789 7 8 3.5070 2.0440 -2.5573 8 6 4.4891 0.1617 -3.5300 9 6 5.0660 -1.0968 -3.3214 10 6 5.5102 -1.8296 -4.3816 11 6 5.3989 -1.3134 -5.6878 12 6 5.8634 -2.0652 -6.7878 13 1 6.2085 -1.5617 -7.6788 14 6 5.8769 -3.4659 -6.7242 15 7 5.3066 -4.0799 -5.7219 16 14 6.7104 -4.4541 -8.0726 17 1 8.1358 -4.6720 -7.7176 18 1 6.0302 -5.7662 -8.2172 19 1 6.6279 -3.7098 -9.3549 20 6 4.8227 -0.0441 -5.8921 21 6 4.3753 0.6785 -4.8263 22 6 4.2332 1.0540 1.3560 23 6 4.3370 2.3598 0.5641 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8465 -0.8899 28 1 1.6886 1.8463 0.8901 29 1 4.5711 -0.3880 -0.9803 30 1 5.1556 -1.4895 -2.3193 31 1 5.9514 -2.8020 -4.2201 32 1 5.3162 -5.0488 -5.6777 33 1 4.7356 0.3559 -6.8915 34 1 3.9339 1.6518 -4.9817 35 1 3.6057 1.0545 2.2472 36 1 5.1213 0.4240 1.4062 37 1 5.2932 2.5884 0.0937 38 1 3.7776 3.2192 0.9339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534662985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:44 Heat of formation + Delta-G solvation = -40.934424 kcal Electronic energy + Delta-G solvation = -20673.628489 eV Core-core repulsion = 17481.546576 eV Total energy + Delta-G solvation = -3192.081913 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.59588 -38.00942 -37.01893 -36.26288 -33.80578 -32.39244 -29.92535 -29.40268 -28.09316 -25.94698 -25.42484 -22.67111 -22.27412 -21.00654 -20.23350 -19.08308 -17.49945 -16.94568 -16.51296 -15.91557 -15.60747 -15.38423 -14.89019 -14.19741 -13.99329 -13.92160 -13.52861 -13.14910 -12.79888 -12.38800 -12.26650 -11.97718 -11.83263 -11.56755 -11.48035 -11.34979 -11.23844 -10.94000 -10.80323 -10.56167 -10.15251 -9.98374 -9.59744 -9.50692 -9.39928 -8.86314 -8.54561 -7.69242 -7.46325 -6.92243 -4.59483 2.24731 2.94962 2.97484 3.01025 3.05664 3.46097 3.68074 3.77700 3.89062 4.05827 4.61307 4.74927 4.94789 5.08304 5.25957 5.38609 5.42147 5.57356 5.59295 5.60458 5.68451 5.84194 5.91547 6.08196 6.09558 6.13107 6.33767 6.79588 6.87230 6.99774 7.10040 7.17190 7.24050 7.47676 7.67335 7.83725 7.89511 8.11013 8.28665 8.44838 8.67484 8.78254 9.11789 9.97692 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.026596 B = 0.003939 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.517811 B = 7107.130316 C = 7341.943931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.091 3.909 4 C 0.113 3.887 5 N -0.704 5.704 6 C 0.577 3.423 7 O -0.571 6.571 8 C -0.277 4.277 9 C -0.065 4.065 10 C -0.172 4.172 11 C 0.127 3.873 12 C -0.445 4.445 13 H 0.083 0.917 14 C 0.071 3.929 15 N -0.783 5.783 16 Si 0.917 3.083 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.235 4.235 21 C -0.026 4.026 22 C -0.171 4.171 23 C -0.164 4.164 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.400 0.600 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.285 0.715 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 3.473 10.628 11.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C 0.013 3.987 4 C 0.025 3.975 5 N -0.356 5.356 6 C 0.372 3.628 7 O -0.453 6.453 8 C -0.281 4.281 9 C -0.084 4.084 10 C -0.191 4.191 11 C 0.124 3.876 12 C -0.473 4.473 13 H 0.101 0.899 14 C -0.148 4.148 15 N -0.407 5.407 16 Si 0.741 3.259 17 H -0.191 1.191 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.255 4.255 21 C -0.045 4.045 22 C -0.209 4.209 23 C -0.203 4.203 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.237 0.763 30 H 0.107 0.893 31 H 0.144 0.856 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.236 3.812 10.573 11.696 hybrid contribution 0.239 -0.801 -0.455 0.952 sum -2.998 3.011 10.118 10.974 Atomic orbital electron populations 1.22714 0.81391 1.02623 0.99671 1.87915 1.19226 1.27518 1.95355 1.22212 0.90645 0.85009 1.00801 1.20253 0.90103 0.99764 0.87388 1.45199 1.59542 1.25719 1.05110 1.18581 0.76853 0.85100 0.82248 1.90606 1.47371 1.21728 1.85588 1.18943 1.18703 0.98225 0.92229 1.20531 0.97299 0.93243 0.97336 1.21125 1.05349 1.01040 0.91620 1.17821 0.86267 0.90571 0.92932 1.19832 1.35550 0.90915 1.01033 0.89891 1.26072 0.93204 0.98660 0.96899 1.69705 1.31179 1.11175 1.28657 0.86153 0.79870 0.78773 0.81089 1.19068 1.20029 1.18384 1.20765 1.09125 0.98650 0.96914 1.20359 0.95314 0.97325 0.91518 1.23305 1.02784 1.00681 0.94080 1.23294 1.02265 0.92198 1.02523 0.94489 0.89690 0.94088 0.91501 0.92913 0.76332 0.89260 0.85585 0.90400 0.88375 0.88125 0.87991 0.88182 0.88031 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.97 10.69 -35.23 -0.38 -6.34 16 3 C 0.09 1.35 5.74 37.16 0.21 1.57 16 4 C 0.11 1.71 1.91 -131.82 -0.25 1.46 16 5 N -0.70 -12.53 5.38 -48.60 -0.26 -12.79 16 6 C 0.58 12.53 7.62 -12.42 -0.09 12.43 16 7 O -0.57 -13.53 15.41 5.29 0.08 -13.45 16 8 C -0.28 -6.44 5.89 -104.73 -0.62 -7.06 16 9 C -0.06 -1.47 9.47 -39.61 -0.38 -1.85 16 10 C -0.17 -4.29 8.61 -39.27 -0.34 -4.62 16 11 C 0.13 3.28 5.57 -106.80 -0.59 2.69 16 12 C -0.44 -11.22 9.06 -37.75 -0.34 -11.56 16 13 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16 14 C 0.07 1.68 5.29 -17.31 -0.09 1.59 16 15 N -0.78 -19.11 10.68 55.56 0.59 -18.51 16 16 Si 0.92 17.61 29.57 -169.99 -5.03 12.58 16 17 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 18 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 20 C -0.23 -5.76 9.73 -39.27 -0.38 -6.14 16 21 C -0.03 -0.62 9.52 -39.61 -0.38 -1.00 16 22 C -0.17 -1.96 10.17 -26.69 -0.27 -2.23 16 23 C -0.16 -2.11 10.17 -26.69 -0.27 -2.38 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.15 7.26 -51.93 -0.38 0.77 16 28 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 29 H 0.40 6.57 6.85 -40.82 -0.28 6.29 16 30 H 0.09 1.75 6.38 -52.49 -0.33 1.41 16 31 H 0.13 3.19 6.08 -52.49 -0.32 2.87 16 32 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 33 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 34 H 0.10 2.32 7.63 -52.48 -0.40 1.92 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -29.22 326.35 -7.81 -37.03 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.06 Total: 12.15 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.68 Total: -15.59 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.33 Total: -31.30 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.30 Total: -19.79 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.22 -7.81 -37.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534662985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.901 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds