Wall clock time and date at job start Mon Mar 30 2020 01:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99880 * 2 1 4 4 C 1.52998 * 109.47041 * 179.97438 * 3 2 1 5 5 N 1.46498 * 115.55148 * 58.85332 * 4 3 2 6 6 C 1.34783 * 119.99689 * 65.42739 * 5 4 3 7 7 O 1.21584 * 119.99972 * 4.86193 * 6 5 4 8 8 C 1.47643 * 119.99576 * 184.86226 * 6 5 4 9 9 C 1.40013 * 119.89699 * 359.73161 * 8 6 5 10 10 C 1.36322 * 120.10559 * 179.71882 * 9 8 6 11 11 C 1.40888 * 119.88985 * 0.56917 * 10 9 8 12 12 C 1.41104 * 120.10320 * 179.67567 * 11 10 9 13 13 H 1.07998 * 120.00221 * 208.30969 * 12 11 10 14 14 C 1.40226 * 119.99848 * 28.31440 * 12 11 10 15 15 N 1.30643 * 120.00333 * 8.64499 * 14 12 11 16 16 Si 1.86804 * 119.99915 * 188.64258 * 14 12 11 17 17 H 1.48505 * 109.46827 * 90.00102 * 16 14 12 18 18 H 1.48501 * 109.47068 * 209.99775 * 16 14 12 19 19 H 1.48496 * 109.47265 * 330.00108 * 16 14 12 20 20 C 1.40890 * 119.79502 * 359.70089 * 11 10 9 21 21 C 1.36315 * 119.89103 * 359.97438 * 20 11 10 22 22 C 1.53005 * 117.49907 * 273.18515 * 4 3 2 23 23 C 1.53002 * 117.49942 * 204.52488 * 4 3 2 24 24 H 1.08991 * 109.47392 * 299.99750 * 1 2 3 25 25 H 1.09002 * 109.46983 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46856 * 59.99985 * 1 2 3 27 27 H 1.09001 * 109.47601 * 300.00200 * 3 2 1 28 28 H 1.09004 * 109.46729 * 60.00318 * 3 2 1 29 29 H 0.96996 * 120.00160 * 245.43266 * 5 4 3 30 30 H 1.07997 * 119.94759 * 359.97438 * 9 8 6 31 31 H 1.07994 * 120.05497 * 180.25061 * 10 9 8 32 32 H 0.97002 * 120.00557 * 180.02562 * 15 14 12 33 33 H 1.08000 * 120.05509 * 179.97438 * 20 11 10 34 34 H 1.08003 * 119.95347 * 179.97438 * 21 20 11 35 35 H 1.08998 * 117.49667 * 359.97438 * 22 4 3 36 36 H 1.08996 * 117.49902 * 145.02363 * 22 4 3 37 37 H 1.08992 * 117.50010 * 214.98014 * 23 4 3 38 38 H 1.09000 * 117.49469 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1119 0.4531 -1.1302 6 6 4.0039 0.9488 -2.3789 7 8 3.5070 2.0440 -2.5573 8 6 4.4891 0.1617 -3.5300 9 6 5.0660 -1.0968 -3.3214 10 6 5.5102 -1.8296 -4.3816 11 6 5.3989 -1.3134 -5.6878 12 6 5.8634 -2.0652 -6.7878 13 1 6.2085 -1.5617 -7.6788 14 6 5.8769 -3.4659 -6.7242 15 7 5.3066 -4.0799 -5.7219 16 14 6.7104 -4.4541 -8.0726 17 1 8.1358 -4.6720 -7.7176 18 1 6.0302 -5.7662 -8.2172 19 1 6.6279 -3.7098 -9.3549 20 6 4.8227 -0.0441 -5.8921 21 6 4.3753 0.6785 -4.8263 22 6 4.2332 1.0540 1.3560 23 6 4.3370 2.3598 0.5641 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8465 -0.8899 28 1 1.6886 1.8463 0.8901 29 1 4.5711 -0.3880 -0.9803 30 1 5.1556 -1.4895 -2.3193 31 1 5.9514 -2.8020 -4.2201 32 1 5.3162 -5.0488 -5.6777 33 1 4.7356 0.3559 -6.8915 34 1 3.9339 1.6518 -4.9817 35 1 3.6057 1.0545 2.2472 36 1 5.1213 0.4240 1.4062 37 1 5.2932 2.5884 0.0937 38 1 3.7776 3.2192 0.9339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534662985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:44 Heat of formation + Delta-G solvation = -58.746381 kcal Electronic energy + Delta-G solvation = -20674.400874 eV Core-core repulsion = 17481.546576 eV Total energy + Delta-G solvation = -3192.854297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05814 -39.50566 -38.56066 -37.52808 -35.63388 -33.91878 -31.71910 -31.28674 -29.13426 -27.72645 -26.48665 -24.20904 -23.40546 -22.84690 -21.79450 -20.54293 -19.36174 -18.49522 -17.77474 -17.17964 -17.04653 -16.66679 -16.16608 -15.74847 -15.66080 -15.30987 -15.05803 -14.80658 -14.47954 -13.94251 -13.62831 -13.41439 -13.35484 -13.12357 -12.83957 -12.61092 -12.50331 -12.40093 -12.38076 -11.84957 -11.73841 -11.38478 -11.25490 -11.15928 -10.80032 -10.42878 -9.97808 -9.57966 -9.35564 -8.71204 -6.50604 0.43023 1.13561 1.40029 1.43649 1.53994 2.12850 2.18447 2.27658 2.51184 2.81023 3.02063 3.67450 3.75205 3.91407 4.00269 4.22868 4.30534 4.34507 4.43968 4.45277 4.49372 4.60318 4.71880 4.77577 4.80548 4.91954 4.96729 5.04062 5.16028 5.18302 5.30537 5.58952 5.68815 5.81428 5.95512 5.99873 6.18968 6.23113 6.55490 6.72201 6.78838 6.88839 7.47111 8.21721 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.026596 B = 0.003939 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.517811 B = 7107.130316 C = 7341.943931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.094 3.906 4 C 0.070 3.930 5 N -0.691 5.691 6 C 0.577 3.423 7 O -0.596 6.596 8 C -0.287 4.287 9 C -0.057 4.057 10 C -0.191 4.191 11 C 0.100 3.900 12 C -0.476 4.476 13 H 0.084 0.916 14 C 0.034 3.966 15 N -0.810 5.810 16 Si 0.992 3.008 17 H -0.258 1.258 18 H -0.266 1.266 19 H -0.258 1.258 20 C -0.248 4.248 21 C -0.037 4.037 22 C -0.137 4.137 23 C -0.163 4.163 24 H 0.063 0.937 25 H 0.096 0.904 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.087 0.913 29 H 0.406 0.594 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.294 0.706 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.129 0.871 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.749 2.842 12.296 12.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C 0.017 3.983 4 C -0.017 4.017 5 N -0.342 5.342 6 C 0.370 3.630 7 O -0.480 6.480 8 C -0.291 4.291 9 C -0.076 4.076 10 C -0.211 4.211 11 C 0.097 3.903 12 C -0.504 4.504 13 H 0.103 0.897 14 C -0.183 4.183 15 N -0.435 5.435 16 Si 0.812 3.188 17 H -0.183 1.183 18 H -0.190 1.190 19 H -0.182 1.182 20 C -0.267 4.267 21 C -0.056 4.056 22 C -0.174 4.174 23 C -0.202 4.202 24 H 0.082 0.918 25 H 0.114 0.886 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.105 0.895 29 H 0.243 0.757 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.068 3.181 12.288 13.059 hybrid contribution 0.115 -0.559 -0.869 1.040 sum -2.954 2.621 11.420 12.083 Atomic orbital electron populations 1.22904 0.79795 1.03708 1.00557 1.87870 1.21122 1.28079 1.95505 1.22193 0.90542 0.84808 1.00803 1.20686 0.90634 1.02115 0.88270 1.45043 1.58523 1.25805 1.04786 1.18365 0.76772 0.84641 0.83218 1.90584 1.48562 1.22672 1.86199 1.19267 1.18280 0.98656 0.92888 1.20755 0.95876 0.92648 0.98333 1.21149 1.06640 1.01220 0.92058 1.18171 0.87044 0.91294 0.93809 1.20106 1.36885 0.92219 1.01199 0.89743 1.26929 0.93161 0.98983 0.99265 1.69740 1.31455 1.12073 1.30197 0.85046 0.78859 0.77158 0.77772 1.18265 1.19043 1.18192 1.20910 1.09539 0.98715 0.97553 1.20510 0.95477 0.97535 0.92052 1.23450 1.02411 0.98915 0.92650 1.23370 1.01362 0.93122 1.02314 0.91813 0.88595 0.94960 0.94828 0.89500 0.75664 0.86199 0.86326 0.89433 0.87644 0.87845 0.85296 0.87202 0.89244 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -12.12 10.69 -148.98 -1.59 -13.71 16 3 C 0.09 2.65 5.74 71.98 0.41 3.06 16 4 C 0.07 1.99 1.91 3.61 0.01 2.00 16 5 N -0.69 -23.92 5.38 -425.93 -2.29 -26.21 16 6 C 0.58 25.09 7.62 86.73 0.66 25.75 16 7 O -0.60 -28.61 15.41 -3.98 -0.06 -28.67 16 8 C -0.29 -13.51 5.89 -19.93 -0.12 -13.63 16 9 C -0.06 -2.60 9.47 22.25 0.21 -2.39 16 10 C -0.19 -9.72 8.61 22.47 0.19 -9.53 16 11 C 0.10 5.30 5.57 -21.28 -0.12 5.19 16 12 C -0.48 -24.51 9.06 23.46 0.21 -24.30 16 13 H 0.08 4.16 7.86 -2.91 -0.02 4.13 16 14 C 0.03 1.60 5.29 85.35 0.45 2.05 16 15 N -0.81 -39.72 10.68 21.87 0.23 -39.49 16 16 Si 0.99 35.61 29.57 68.60 2.03 37.64 16 17 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 18 H -0.27 -9.08 7.11 99.48 0.71 -8.38 16 19 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 20 C -0.25 -12.54 9.73 22.47 0.22 -12.32 16 21 C -0.04 -1.80 9.52 22.25 0.21 -1.58 16 22 C -0.14 -2.64 10.17 30.62 0.31 -2.33 16 23 C -0.16 -3.80 10.17 30.62 0.31 -3.49 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.03 1.15 7.26 -2.39 -0.02 1.14 16 28 H 0.09 1.80 8.11 -2.38 -0.02 1.78 16 29 H 0.41 12.74 6.85 -92.71 -0.63 12.10 16 30 H 0.12 4.57 6.38 -2.91 -0.02 4.56 16 31 H 0.12 6.14 6.08 -2.91 -0.02 6.12 16 32 H 0.29 12.89 8.29 -92.71 -0.77 12.12 16 33 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 34 H 0.10 4.92 7.63 -2.91 -0.02 4.90 16 35 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -64.39 326.35 2.97 -61.42 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: 0.44 Total: 38.71 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 4.22 Total: -29.69 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -2.06 Total: -65.70 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -1.65 Total: -42.38 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -64.39 2.97 -61.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534662985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.676 kcal (2) G-P(sol) polarization free energy of solvation -64.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds