Wall clock time and date at job start Mon Mar 30 2020 02:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99720 * 2 1 4 4 H 1.48502 * 109.47112 * 270.00043 * 3 2 1 5 5 H 1.48496 * 109.47368 * 30.00199 * 3 2 1 6 6 H 1.48508 * 109.47080 * 150.00125 * 3 2 1 7 7 C 1.37873 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00160 * 359.97438 * 7 2 1 10 10 C 1.53114 * 109.52501 * 179.97438 * 9 7 2 11 11 C 1.53045 * 109.27761 * 177.56232 * 10 9 7 12 12 N 1.46845 * 109.51837 * 300.81855 * 11 10 9 13 13 C 1.39196 * 110.99756 * 185.83791 * 12 11 10 14 14 C 1.39425 * 120.83193 * 0.02562 * 13 12 11 15 15 C 1.38222 * 119.26337 * 179.97438 * 14 13 12 16 16 N 1.31648 * 120.99848 * 359.97438 * 15 14 13 17 17 C 1.32828 * 121.82276 * 0.04444 * 16 15 14 18 18 C 1.48190 * 119.68396 * 179.97438 * 17 16 15 19 19 N 1.34771 * 120.00313 * 359.97438 * 18 17 16 20 20 O 1.21519 * 119.99756 * 179.97438 * 18 17 16 21 21 C 1.39030 * 120.62354 * 359.95777 * 17 16 15 22 22 C 1.46849 * 111.19770 * 61.74934 * 12 11 10 23 23 C 1.53039 * 109.52008 * 298.25157 * 22 12 11 24 24 H 0.97000 * 120.00223 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.56990 * 59.84530 * 9 7 2 26 26 H 1.08997 * 109.50290 * 57.61883 * 10 9 7 27 27 H 1.09002 * 109.53493 * 297.52185 * 10 9 7 28 28 H 1.08997 * 109.45902 * 180.80579 * 11 10 9 29 29 H 1.08996 * 109.46092 * 60.83489 * 11 10 9 30 30 H 1.08003 * 120.36225 * 359.70203 * 14 13 12 31 31 H 1.08006 * 119.49919 * 179.97438 * 15 14 13 32 32 H 0.97000 * 120.00058 * 359.97438 * 19 18 17 33 33 H 0.97003 * 120.00017 * 179.97438 * 19 18 17 34 34 H 1.08006 * 120.51825 * 180.02562 * 21 17 16 35 35 H 1.09001 * 109.46522 * 58.26569 * 22 12 11 36 36 H 1.09007 * 109.46310 * 178.23820 * 22 12 11 37 37 H 1.09009 * 109.49978 * 299.23982 * 23 22 12 38 38 H 1.09001 * 109.50473 * 179.12385 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2451 -3.6638 -0.0018 11 6 1.4753 -4.9851 0.0596 12 7 0.6555 -5.0191 1.2775 13 6 0.0433 -6.2596 1.4321 14 6 0.2432 -7.2764 0.4993 15 6 -0.3803 -8.4959 0.6851 16 7 -1.1565 -8.7088 1.7268 17 6 -1.3760 -7.7698 2.6403 18 6 -2.2591 -8.0607 3.7942 19 7 -2.8355 -9.2731 3.9129 20 8 -2.4634 -7.2059 4.6335 21 6 -0.7848 -6.5168 2.5241 22 6 -0.3383 -3.9381 1.2789 23 6 0.3773 -2.5855 1.2538 24 1 -0.4850 0.8400 0.0004 25 1 0.6214 -2.5572 -0.8884 26 1 2.9006 -3.5837 0.8654 27 1 2.8421 -3.6324 -0.9133 28 1 2.1807 -5.8160 0.0733 29 1 0.8304 -5.0707 -0.8149 30 1 0.8748 -7.1114 -0.3612 31 1 -0.2284 -9.2861 -0.0354 32 1 -2.6727 -9.9553 3.2428 33 1 -3.4133 -9.4636 4.6685 34 1 -0.9642 -5.7547 3.2681 35 1 -0.9747 -4.0286 0.3986 36 1 -0.9503 -4.0085 2.1782 37 1 1.0034 -2.4886 2.1409 38 1 -0.3608 -1.7835 1.2391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546030188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:25 Heat of formation + Delta-G solvation = -4.130115 kcal Electronic energy + Delta-G solvation = -20899.129985 eV Core-core repulsion = 17740.936777 eV Total energy + Delta-G solvation = -3158.193207 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.82739 -39.26733 -37.96560 -34.60539 -33.70886 -32.02754 -31.58000 -30.16231 -29.61003 -26.01872 -24.87860 -23.30794 -22.39170 -21.64618 -20.45116 -18.86362 -18.22745 -17.16971 -16.86214 -16.31224 -15.54511 -15.27256 -15.11783 -14.71172 -14.33543 -14.31516 -13.94713 -13.66109 -13.29841 -12.88392 -12.67197 -12.53019 -11.91874 -11.49574 -11.15353 -10.98560 -10.63713 -10.47770 -10.41807 -10.26388 -10.11219 -9.83087 -9.64062 -9.55282 -9.23695 -9.12058 -8.84271 -8.38394 -7.95802 -6.05125 -4.10877 0.66870 1.27800 2.70010 3.26548 3.27666 3.35131 3.38146 3.80146 4.02191 4.21860 4.39763 4.72665 4.96601 5.11635 5.24604 5.25536 5.39059 5.55800 5.66505 5.69651 5.83336 5.93862 5.99203 6.07040 6.33631 6.40998 6.46203 6.62380 6.64371 6.89271 6.93122 7.15530 7.25760 7.30029 7.43666 7.67813 7.76218 7.89953 8.01899 8.13957 8.37246 8.92353 9.54491 11.01382 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032598 B = 0.003901 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.741152 B = 7176.254652 C = 7812.616035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.046 3.954 10 C -0.109 4.109 11 C 0.052 3.948 12 N -0.480 5.480 13 C 0.165 3.835 14 C -0.212 4.212 15 C 0.121 3.879 16 N -0.493 5.493 17 C 0.088 3.912 18 C 0.580 3.420 19 N -0.838 5.838 20 O -0.535 6.535 21 C -0.136 4.136 22 C 0.059 3.941 23 C -0.108 4.108 24 H 0.261 0.739 25 H 0.024 0.976 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.143 0.857 31 H 0.160 0.840 32 H 0.411 0.589 33 H 0.403 0.597 34 H 0.149 0.851 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.763 -17.533 1.435 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.028 3.972 10 C -0.147 4.147 11 C -0.074 4.074 12 N -0.193 5.193 13 C 0.056 3.944 14 C -0.236 4.236 15 C -0.039 4.039 16 N -0.208 5.208 17 C -0.049 4.049 18 C 0.363 3.637 19 N -0.401 5.401 20 O -0.411 6.411 21 C -0.160 4.160 22 C -0.065 4.065 23 C -0.146 4.146 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.161 0.839 31 H 0.177 0.823 32 H 0.241 0.759 33 H 0.233 0.767 34 H 0.166 0.834 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.008 -17.333 2.401 17.755 hybrid contribution 0.373 1.143 -0.745 1.414 sum -2.635 -16.191 1.656 16.487 Atomic orbital electron populations 1.69849 1.05898 1.26551 1.50738 1.24967 0.94860 0.99124 0.94996 0.86606 0.79921 0.83492 0.78054 1.20752 1.21224 1.19914 1.21155 0.92924 0.90452 1.50571 0.92609 1.18716 0.92669 0.91923 0.93895 1.21745 0.98852 0.93056 1.01034 1.22421 0.95890 1.00543 0.88525 1.58762 1.22156 1.00897 1.37485 1.19478 0.90226 0.92245 0.92417 1.22508 1.05053 0.95650 1.00363 1.22468 0.91732 0.95628 0.94027 1.67483 1.17079 1.33032 1.03165 1.20722 0.98273 0.91031 0.94894 1.17920 0.79137 0.82332 0.84272 1.43614 1.51289 1.15063 1.30168 1.90843 1.61901 1.46401 1.41935 1.21765 0.97924 0.97910 0.98377 1.22549 0.92054 0.91519 1.00375 1.21782 1.00564 0.92392 0.99901 0.92936 0.95797 0.92148 0.92317 0.91254 0.93797 0.83919 0.82331 0.75871 0.76674 0.83358 0.94152 0.91308 0.93327 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.68 11.38 55.43 0.63 -24.05 16 2 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.51 -13.56 8.56 -34.44 -0.29 -13.85 16 8 H 0.06 1.46 7.75 -52.48 -0.41 1.06 16 9 C 0.05 1.09 2.16 -91.65 -0.20 0.89 16 10 C -0.11 -2.11 5.32 -26.65 -0.14 -2.25 16 11 C 0.05 0.85 4.16 -3.83 -0.02 0.83 16 12 N -0.48 -8.23 4.70 -170.96 -0.80 -9.03 16 13 C 0.17 2.53 5.65 -83.63 -0.47 2.06 16 14 C -0.21 -2.66 8.89 -39.15 -0.35 -3.01 16 15 C 0.12 1.35 11.17 -17.64 -0.20 1.15 16 16 N -0.49 -6.13 9.54 -9.89 -0.09 -6.22 16 17 C 0.09 1.24 6.75 -83.05 -0.56 0.68 16 18 C 0.58 7.95 8.08 -12.17 -0.10 7.85 16 19 N -0.84 -7.69 8.86 30.61 0.27 -7.42 16 20 O -0.54 -9.14 17.16 5.35 0.09 -9.05 16 21 C -0.14 -2.10 8.77 -38.84 -0.34 -2.44 16 22 C 0.06 1.11 5.26 -3.83 -0.02 1.09 16 23 C -0.11 -2.43 5.12 -26.65 -0.14 -2.57 16 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 0.96 7.02 -51.93 -0.36 0.60 16 29 H 0.04 0.69 7.77 -51.93 -0.40 0.29 16 30 H 0.14 1.55 5.95 -52.48 -0.31 1.24 16 31 H 0.16 1.20 8.06 -52.48 -0.42 0.77 16 32 H 0.41 3.08 8.16 -40.82 -0.33 2.75 16 33 H 0.40 2.86 8.93 -40.82 -0.36 2.50 16 34 H 0.15 2.42 6.82 -52.48 -0.36 2.06 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.22 6.78 -51.92 -0.35 0.87 16 37 H 0.05 1.13 8.14 -51.92 -0.42 0.70 16 38 H 0.10 2.53 6.18 -51.93 -0.32 2.21 16 LS Contribution 310.11 15.07 4.67 4.67 Total: -1.00 -29.99 310.11 -8.06 -38.05 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.89 Total: 5.24 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -2.92 Total: -8.02 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.00 Total: -46.72 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.99 -8.06 -38.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546030188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.918 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds