Wall clock time and date at job start Mon Mar 30 2020 02:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99720 * 2 1 4 4 H 1.48502 * 109.47112 * 270.00043 * 3 2 1 5 5 H 1.48496 * 109.47368 * 30.00199 * 3 2 1 6 6 H 1.48508 * 109.47080 * 150.00125 * 3 2 1 7 7 C 1.37873 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00160 * 359.97438 * 7 2 1 10 10 C 1.53114 * 109.52501 * 179.97438 * 9 7 2 11 11 C 1.53045 * 109.27761 * 177.56232 * 10 9 7 12 12 N 1.46845 * 109.51837 * 300.81855 * 11 10 9 13 13 C 1.39196 * 110.99756 * 185.83791 * 12 11 10 14 14 C 1.39425 * 120.83193 * 0.02562 * 13 12 11 15 15 C 1.38222 * 119.26337 * 179.97438 * 14 13 12 16 16 N 1.31648 * 120.99848 * 359.97438 * 15 14 13 17 17 C 1.32828 * 121.82276 * 0.04444 * 16 15 14 18 18 C 1.48190 * 119.68396 * 179.97438 * 17 16 15 19 19 N 1.34771 * 120.00313 * 359.97438 * 18 17 16 20 20 O 1.21519 * 119.99756 * 179.97438 * 18 17 16 21 21 C 1.39030 * 120.62354 * 359.95777 * 17 16 15 22 22 C 1.46849 * 111.19770 * 61.74934 * 12 11 10 23 23 C 1.53039 * 109.52008 * 298.25157 * 22 12 11 24 24 H 0.97000 * 120.00223 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.56990 * 59.84530 * 9 7 2 26 26 H 1.08997 * 109.50290 * 57.61883 * 10 9 7 27 27 H 1.09002 * 109.53493 * 297.52185 * 10 9 7 28 28 H 1.08997 * 109.45902 * 180.80579 * 11 10 9 29 29 H 1.08996 * 109.46092 * 60.83489 * 11 10 9 30 30 H 1.08003 * 120.36225 * 359.70203 * 14 13 12 31 31 H 1.08006 * 119.49919 * 179.97438 * 15 14 13 32 32 H 0.97000 * 120.00058 * 359.97438 * 19 18 17 33 33 H 0.97003 * 120.00017 * 179.97438 * 19 18 17 34 34 H 1.08006 * 120.51825 * 180.02562 * 21 17 16 35 35 H 1.09001 * 109.46522 * 58.26569 * 22 12 11 36 36 H 1.09007 * 109.46310 * 178.23820 * 22 12 11 37 37 H 1.09009 * 109.49978 * 299.23982 * 23 22 12 38 38 H 1.09001 * 109.50473 * 179.12385 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2451 -3.6638 -0.0018 11 6 1.4753 -4.9851 0.0596 12 7 0.6555 -5.0191 1.2775 13 6 0.0433 -6.2596 1.4321 14 6 0.2432 -7.2764 0.4993 15 6 -0.3803 -8.4959 0.6851 16 7 -1.1565 -8.7088 1.7268 17 6 -1.3760 -7.7698 2.6403 18 6 -2.2591 -8.0607 3.7942 19 7 -2.8355 -9.2731 3.9129 20 8 -2.4634 -7.2059 4.6335 21 6 -0.7848 -6.5168 2.5241 22 6 -0.3383 -3.9381 1.2789 23 6 0.3773 -2.5855 1.2538 24 1 -0.4850 0.8400 0.0004 25 1 0.6214 -2.5572 -0.8884 26 1 2.9006 -3.5837 0.8654 27 1 2.8421 -3.6324 -0.9133 28 1 2.1807 -5.8160 0.0733 29 1 0.8304 -5.0707 -0.8149 30 1 0.8748 -7.1114 -0.3612 31 1 -0.2284 -9.2861 -0.0354 32 1 -2.6727 -9.9553 3.2428 33 1 -3.4133 -9.4636 4.6685 34 1 -0.9642 -5.7547 3.2681 35 1 -0.9747 -4.0286 0.3986 36 1 -0.9503 -4.0085 2.1782 37 1 1.0034 -2.4886 2.1409 38 1 -0.3608 -1.7835 1.2391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546030188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:24 Heat of formation + Delta-G solvation = -26.228552 kcal Electronic energy + Delta-G solvation = -20900.088245 eV Core-core repulsion = 17740.936777 eV Total energy + Delta-G solvation = -3159.151467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94022 -40.46046 -39.21425 -36.21210 -34.75420 -33.73082 -32.71621 -31.57410 -31.02342 -27.74080 -26.08111 -24.69785 -23.82216 -23.01087 -21.63339 -20.47613 -19.30348 -18.49767 -18.15543 -17.75312 -16.69422 -16.53942 -16.43347 -16.20442 -15.65592 -15.52357 -15.09156 -14.88075 -14.81250 -14.33588 -14.23985 -14.15528 -13.32997 -12.98350 -12.87733 -12.70051 -12.38002 -12.13376 -12.01291 -11.67386 -11.56228 -11.21974 -10.84820 -10.77236 -10.73264 -10.68557 -10.41524 -10.22134 -9.21282 -8.10015 -6.22706 -0.38661 0.20794 1.40693 1.42707 1.51915 1.66184 2.28541 2.43153 2.64779 2.90522 3.18046 3.31666 3.74442 3.88070 4.02483 4.06323 4.15224 4.26923 4.34854 4.43720 4.58457 4.63037 4.69667 4.75825 4.81079 4.94501 5.02134 5.15996 5.28410 5.44456 5.52037 5.61390 5.80046 5.84739 5.95743 6.10687 6.19284 6.28466 6.37491 6.79514 6.88620 7.22867 7.45681 8.94755 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032598 B = 0.003901 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.741152 B = 7176.254652 C = 7812.616035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.043 3.957 10 C -0.102 4.102 11 C 0.059 3.941 12 N -0.492 5.492 13 C 0.145 3.855 14 C -0.201 4.201 15 C 0.129 3.871 16 N -0.483 5.483 17 C 0.081 3.919 18 C 0.575 3.425 19 N -0.811 5.811 20 O -0.579 6.579 21 C -0.153 4.153 22 C 0.074 3.926 23 C -0.098 4.098 24 H 0.260 0.740 25 H -0.002 1.002 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.167 0.833 31 H 0.206 0.794 32 H 0.423 0.577 33 H 0.415 0.585 34 H 0.127 0.873 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 -20.213 0.387 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.024 3.976 10 C -0.140 4.140 11 C -0.067 4.067 12 N -0.205 5.205 13 C 0.038 3.962 14 C -0.224 4.224 15 C -0.030 4.030 16 N -0.197 5.197 17 C -0.055 4.055 18 C 0.358 3.642 19 N -0.375 5.375 20 O -0.458 6.458 21 C -0.178 4.178 22 C -0.051 4.051 23 C -0.137 4.137 24 H 0.069 0.931 25 H 0.016 0.984 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.070 0.930 30 H 0.184 0.816 31 H 0.223 0.777 32 H 0.255 0.745 33 H 0.248 0.752 34 H 0.145 0.855 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.318 -20.086 1.346 20.264 hybrid contribution 0.127 1.859 -0.455 1.918 sum -2.191 -18.226 0.891 18.379 Atomic orbital electron populations 1.69988 1.07109 1.27096 1.51500 1.25714 0.95640 1.02304 0.94882 0.85662 0.78765 0.79681 0.78183 1.20099 1.21183 1.19411 1.21566 0.93090 0.92090 1.50269 0.92874 1.18688 0.93186 0.92815 0.92891 1.21593 0.98024 0.93263 1.01109 1.22397 0.96199 0.99610 0.88510 1.58656 1.22171 1.01270 1.38438 1.19508 0.91311 0.91996 0.93418 1.22813 1.04561 0.95113 0.99948 1.23227 0.89845 0.96120 0.93792 1.67589 1.17002 1.32056 1.03089 1.20765 0.98365 0.90877 0.95539 1.18000 0.79291 0.83020 0.83840 1.43422 1.49858 1.13683 1.30519 1.90824 1.63611 1.47979 1.43432 1.21705 0.99161 0.98357 0.98552 1.22201 0.92058 0.90527 1.00324 1.21507 0.99524 0.93833 0.98808 0.93087 0.98433 0.93040 0.91302 0.87782 0.93028 0.81585 0.77730 0.74492 0.75233 0.85457 0.94607 0.91019 0.94889 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.45 11.38 21.45 0.24 -52.20 16 2 C 0.01 0.72 5.31 84.65 0.45 1.17 16 3 Si 0.95 43.37 29.54 68.60 2.03 45.39 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.53 -28.76 8.56 25.60 0.22 -28.55 16 8 H 0.05 2.82 7.75 -2.91 -0.02 2.80 16 9 C 0.04 2.06 2.16 -11.46 -0.02 2.04 16 10 C -0.10 -3.90 5.32 30.65 0.16 -3.74 16 11 C 0.06 1.78 4.16 86.33 0.36 2.14 16 12 N -0.49 -16.50 4.70 -694.81 -3.27 -19.77 16 13 C 0.15 4.22 5.65 38.55 0.22 4.44 16 14 C -0.20 -4.28 8.89 22.55 0.20 -4.08 16 15 C 0.13 2.28 11.17 84.72 0.95 3.23 16 16 N -0.48 -10.39 9.54 -185.21 -1.77 -12.16 16 17 C 0.08 2.19 6.75 41.83 0.28 2.47 16 18 C 0.58 15.32 8.08 86.89 0.70 16.02 16 19 N -0.81 -13.27 8.86 -175.37 -1.55 -14.83 16 20 O -0.58 -20.13 17.16 -3.77 -0.06 -20.20 16 21 C -0.15 -4.72 8.77 22.75 0.20 -4.52 16 22 C 0.07 2.85 5.26 86.33 0.45 3.30 16 23 C -0.10 -4.63 5.12 30.65 0.16 -4.47 16 24 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 25 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 28 H 0.10 2.47 7.02 -2.39 -0.02 2.46 16 29 H 0.05 1.50 7.77 -2.39 -0.02 1.48 16 30 H 0.17 2.76 5.95 -2.91 -0.02 2.74 16 31 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.42 5.11 8.16 -92.71 -0.76 4.36 16 33 H 0.41 5.10 8.93 -92.71 -0.83 4.27 16 34 H 0.13 4.39 6.82 -2.91 -0.02 4.37 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 2.68 6.78 -2.38 -0.02 2.67 16 37 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.07 3.61 6.18 -2.39 -0.01 3.60 16 Total: -1.00 -67.60 310.11 -0.54 -68.13 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.48 Total: 16.18 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 4.33 Total: -10.55 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -6.34 Total: -98.96 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.06 Total: -20.20 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -67.60 -0.54 -68.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546030188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.902 kcal (2) G-P(sol) polarization free energy of solvation -67.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds