Wall clock time and date at job start Mon Mar 30 2020 02:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86804 * 120.00385 * 2 1 4 4 H 1.48497 * 109.47065 * 83.38444 * 3 2 1 5 5 H 1.48500 * 109.46832 * 203.38805 * 3 2 1 6 6 H 1.48495 * 109.46586 * 323.38619 * 3 2 1 7 7 C 1.39014 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00210 * 19.07107 * 7 2 1 9 9 N 1.36884 * 120.00074 * 199.07692 * 7 2 1 10 10 C 1.34773 * 120.00203 * 33.85791 * 9 7 2 11 11 O 1.21731 * 119.99742 * 353.66959 * 10 9 7 12 12 C 1.46639 * 120.00076 * 173.66521 * 10 9 7 13 13 C 1.36941 * 126.92136 * 347.44616 * 12 10 9 14 14 N 1.33440 * 107.83299 * 179.82465 * 13 12 10 15 15 C 1.30564 * 109.69475 * 0.42684 * 14 13 12 16 16 N 1.34932 * 109.00412 * 359.75599 * 15 14 13 17 17 C 1.46443 * 124.99382 * 179.97438 * 16 15 14 18 18 C 1.53266 * 108.81247 * 342.93176 * 17 16 15 19 19 C 1.53162 * 109.44417 * 50.23257 * 18 17 16 20 20 C 1.51120 * 127.08993 * 179.79513 * 15 14 13 21 21 C 1.46499 * 119.99961 * 213.86538 * 9 7 2 22 22 C 1.53003 * 117.49894 * 1.55559 * 21 9 7 23 23 C 1.53009 * 117.49735 * 292.89655 * 21 9 7 24 24 H 0.96999 * 119.99694 * 359.97438 * 1 2 3 25 25 H 1.08008 * 126.08531 * 359.97438 * 13 12 10 26 26 H 1.09000 * 109.57515 * 102.76154 * 17 16 15 27 27 H 1.08997 * 109.57373 * 223.16072 * 17 16 15 28 28 H 1.08999 * 109.48876 * 290.22917 * 18 17 16 29 29 H 1.09000 * 109.47016 * 170.21549 * 18 17 16 30 30 H 1.08993 * 109.51423 * 170.71763 * 19 18 17 31 31 H 1.08998 * 109.55498 * 50.58447 * 19 18 17 32 32 H 1.08994 * 109.71051 * 283.57163 * 20 15 14 33 33 H 1.08999 * 109.70686 * 44.15533 * 20 15 14 34 34 H 1.08995 * 115.55576 * 147.23195 * 21 9 7 35 35 H 1.09003 * 117.49711 * 0.02562 * 22 21 9 36 36 H 1.08995 * 117.50012 * 145.02650 * 22 21 9 37 37 H 1.08996 * 117.49886 * 214.97932 * 23 21 9 38 38 H 1.09000 * 117.49661 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.3559 2.1270 1.3907 5 1 3.6084 1.4037 -0.5558 6 1 1.5223 2.6082 -0.8350 7 6 2.0089 -1.2039 -0.0005 8 1 1.5134 -2.1135 -0.3066 9 7 3.3214 -1.2367 0.3869 10 6 3.7605 -0.4035 1.3510 11 8 3.0215 0.4554 1.7960 12 6 5.1283 -0.5318 1.8638 13 6 5.9924 -1.5725 1.6509 14 7 7.1314 -1.2948 2.2883 15 6 7.0264 -0.1438 2.8956 16 7 5.7997 0.3667 2.6607 17 6 5.3096 1.6464 3.1771 18 6 6.2100 2.0894 4.3356 19 6 7.6763 2.0144 3.8992 20 6 8.0792 0.5437 3.7339 21 6 4.2488 -2.1774 -0.2465 22 6 3.6981 -3.0711 -1.3596 23 6 4.0271 -3.6693 0.0106 24 1 -0.4850 0.8401 0.0004 25 1 5.7893 -2.4591 1.0685 26 1 5.3379 2.3947 2.3851 27 1 4.2867 1.5283 3.5345 28 1 6.0514 1.4328 5.1910 29 1 5.9658 3.1145 4.6141 30 1 8.3058 2.4814 4.6565 31 1 7.8014 2.5351 2.9499 32 1 8.1395 0.0666 4.7121 33 1 9.0458 0.4808 3.2342 34 1 5.2777 -1.8308 -0.3422 35 1 2.6458 -2.9589 -1.6208 36 1 4.3648 -3.3128 -2.1873 37 1 4.9101 -4.3041 0.0836 38 1 3.1914 -3.9508 0.6513 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000560037191.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:27 Heat of formation + Delta-G solvation = 82.609055 kcal Electronic energy + Delta-G solvation = -22257.328301 eV Core-core repulsion = 19102.896387 eV Total energy + Delta-G solvation = -3154.431915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.04629 -39.12203 -36.76694 -36.38210 -33.23832 -32.74766 -31.67908 -29.78857 -28.72650 -25.37747 -23.94563 -22.99385 -22.03482 -21.89052 -20.70923 -19.99242 -18.60422 -17.86517 -16.49549 -15.92547 -15.81319 -15.01760 -14.67400 -14.44345 -14.26435 -14.10824 -13.86658 -13.61198 -13.45836 -13.08683 -12.50607 -12.40002 -11.83796 -11.52540 -11.27811 -11.20577 -11.16262 -11.08783 -11.05442 -10.34542 -10.06062 -9.97111 -9.86773 -9.67895 -9.25055 -8.64519 -8.48705 -7.80805 -7.69899 -6.23742 -4.02225 1.87594 2.94238 3.20032 3.51664 3.56419 3.73255 4.04778 4.22758 4.36623 4.44547 4.56698 4.60478 4.68188 4.73645 5.10483 5.20494 5.27766 5.31708 5.37314 5.45657 5.56384 5.58377 5.63202 5.68207 5.72127 5.77761 5.80846 6.02281 6.02878 6.08388 6.19594 6.52580 6.61883 6.73943 6.99721 7.45509 7.67301 7.75527 8.32960 8.59280 8.71817 9.27516 9.61502 10.72227 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.008232 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.038105 B = 3400.684458 C = 4587.409238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.074 3.926 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.306 1.306 6 H -0.335 1.335 7 C -0.346 4.346 8 H 0.105 0.895 9 N -0.397 5.397 10 C 0.485 3.515 11 O -0.549 6.549 12 C -0.033 4.033 13 C -0.011 4.011 14 N -0.494 5.494 15 C 0.199 3.801 16 N -0.425 5.425 17 C 0.102 3.898 18 C -0.135 4.135 19 C -0.126 4.126 20 C -0.029 4.029 21 C 0.049 3.951 22 C -0.170 4.170 23 C -0.195 4.195 24 H 0.275 0.725 25 H 0.189 0.811 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.213 1.389 5.162 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.136 4.136 3 Si 0.828 3.172 4 H -0.188 1.188 5 H -0.235 1.235 6 H -0.270 1.270 7 C -0.472 4.472 8 H 0.122 0.878 9 N -0.111 5.111 10 C 0.280 3.720 11 O -0.440 6.440 12 C -0.151 4.151 13 C -0.163 4.163 14 N -0.213 5.213 15 C -0.062 4.062 16 N -0.107 5.107 17 C -0.020 4.020 18 C -0.172 4.172 19 C -0.164 4.164 20 C -0.068 4.068 21 C -0.057 4.057 22 C -0.208 4.208 23 C -0.234 4.234 24 H 0.085 0.915 25 H 0.205 0.795 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.259 1.476 5.418 15.325 hybrid contribution -0.476 1.073 -0.163 1.185 sum 13.783 2.549 5.255 14.969 Atomic orbital electron populations 1.69724 1.07290 1.28892 1.43226 1.25690 0.95376 1.00938 0.91569 0.84625 0.77009 0.79782 0.75752 1.18800 1.23456 1.26950 1.18917 0.82738 0.96783 1.48727 0.87755 1.42755 1.08668 1.30868 1.28852 1.16839 0.85348 0.86919 0.82911 1.90373 1.56621 1.35378 1.61661 1.21048 0.96490 0.93816 1.03727 1.23315 0.89334 1.00044 1.03587 1.69842 1.25449 1.13147 1.12879 1.23246 0.86734 0.93069 1.03199 1.45075 1.11950 1.16801 1.36916 1.22078 1.00346 0.82680 0.96898 1.21945 0.94733 1.02908 0.97655 1.21695 0.96158 0.96019 1.02559 1.20162 0.94985 0.93491 0.98163 1.22229 0.94680 0.87511 1.01261 1.23270 1.03671 1.02307 0.91511 1.23404 1.03623 0.95938 1.00428 0.91511 0.79486 0.90088 0.87484 0.90648 0.89348 0.90125 0.91180 0.89471 0.88882 0.85775 0.86930 0.88901 0.88733 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.83 13.96 55.50 0.77 -25.05 16 2 C 0.07 2.18 4.98 -17.45 -0.09 2.09 16 3 Si 0.99 26.84 24.05 -169.99 -4.09 22.75 16 4 H -0.26 -7.14 5.94 56.52 0.34 -6.80 16 5 H -0.31 -8.39 6.96 56.52 0.39 -8.00 16 6 H -0.33 -8.99 7.11 56.52 0.40 -8.59 16 7 C -0.35 -9.60 8.99 -15.01 -0.13 -9.74 16 8 H 0.10 2.94 6.81 -52.48 -0.36 2.58 16 9 N -0.40 -9.76 2.66 -109.20 -0.29 -10.05 16 10 C 0.49 12.20 6.06 -12.87 -0.08 12.12 16 11 O -0.55 -15.14 8.56 5.16 0.04 -15.10 16 12 C -0.03 -0.71 6.73 -82.36 -0.55 -1.27 16 13 C -0.01 -0.21 9.77 -17.32 -0.17 -0.38 16 14 N -0.49 -9.18 11.19 -10.31 -0.12 -9.29 16 15 C 0.20 3.33 7.64 -155.26 -1.19 2.15 16 16 N -0.43 -7.98 3.16 -109.75 -0.35 -8.33 16 17 C 0.10 1.65 6.29 -3.94 -0.02 1.62 16 18 C -0.13 -1.47 5.95 -26.51 -0.16 -1.63 16 19 C -0.13 -1.20 5.96 -26.45 -0.16 -1.36 16 20 C -0.03 -0.33 6.33 -27.48 -0.17 -0.50 16 21 C 0.05 0.94 4.37 -67.92 -0.30 0.64 16 22 C -0.17 -2.88 9.78 -26.69 -0.26 -3.14 16 23 C -0.20 -3.18 9.51 -26.69 -0.25 -3.43 16 24 H 0.28 7.82 8.31 -40.82 -0.34 7.48 16 25 H 0.19 3.26 4.39 -52.48 -0.23 3.03 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.11 1.96 7.16 -51.93 -0.37 1.59 16 28 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.13 2.24 5.68 -51.93 -0.30 1.94 16 35 H 0.11 2.15 6.45 -51.93 -0.33 1.81 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.25 8.09 -51.93 -0.42 0.83 16 38 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -34.26 296.04 -8.12 -42.38 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.02 Total: 1.06 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -3.53 Total: -2.83 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.02 Total: -52.72 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.04 Total: -15.10 kcal Atomic # 14 Polarization: 26.84 SS G_CDS: -4.09 Total: 22.75 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.26 -8.12 -42.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560037191.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.987 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds