Wall clock time and date at job start Mon Mar 30 2020 02:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86804 * 120.00385 * 2 1 4 4 H 1.48497 * 109.47065 * 83.38444 * 3 2 1 5 5 H 1.48500 * 109.46832 * 203.38805 * 3 2 1 6 6 H 1.48495 * 109.46586 * 323.38619 * 3 2 1 7 7 C 1.39014 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00210 * 19.07107 * 7 2 1 9 9 N 1.36884 * 120.00074 * 199.07692 * 7 2 1 10 10 C 1.34773 * 120.00203 * 33.85791 * 9 7 2 11 11 O 1.21731 * 119.99742 * 353.66959 * 10 9 7 12 12 C 1.46639 * 120.00076 * 173.66521 * 10 9 7 13 13 C 1.36941 * 126.92136 * 347.44616 * 12 10 9 14 14 N 1.33440 * 107.83299 * 179.82465 * 13 12 10 15 15 C 1.30564 * 109.69475 * 0.42684 * 14 13 12 16 16 N 1.34932 * 109.00412 * 359.75599 * 15 14 13 17 17 C 1.46443 * 124.99382 * 179.97438 * 16 15 14 18 18 C 1.53266 * 108.81247 * 342.93176 * 17 16 15 19 19 C 1.53162 * 109.44417 * 50.23257 * 18 17 16 20 20 C 1.51120 * 127.08993 * 179.79513 * 15 14 13 21 21 C 1.46499 * 119.99961 * 213.86538 * 9 7 2 22 22 C 1.53003 * 117.49894 * 1.55559 * 21 9 7 23 23 C 1.53009 * 117.49735 * 292.89655 * 21 9 7 24 24 H 0.96999 * 119.99694 * 359.97438 * 1 2 3 25 25 H 1.08008 * 126.08531 * 359.97438 * 13 12 10 26 26 H 1.09000 * 109.57515 * 102.76154 * 17 16 15 27 27 H 1.08997 * 109.57373 * 223.16072 * 17 16 15 28 28 H 1.08999 * 109.48876 * 290.22917 * 18 17 16 29 29 H 1.09000 * 109.47016 * 170.21549 * 18 17 16 30 30 H 1.08993 * 109.51423 * 170.71763 * 19 18 17 31 31 H 1.08998 * 109.55498 * 50.58447 * 19 18 17 32 32 H 1.08994 * 109.71051 * 283.57163 * 20 15 14 33 33 H 1.08999 * 109.70686 * 44.15533 * 20 15 14 34 34 H 1.08995 * 115.55576 * 147.23195 * 21 9 7 35 35 H 1.09003 * 117.49711 * 0.02562 * 22 21 9 36 36 H 1.08995 * 117.50012 * 145.02650 * 22 21 9 37 37 H 1.08996 * 117.49886 * 214.97932 * 23 21 9 38 38 H 1.09000 * 117.49661 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.3559 2.1270 1.3907 5 1 3.6084 1.4037 -0.5558 6 1 1.5223 2.6082 -0.8350 7 6 2.0089 -1.2039 -0.0005 8 1 1.5134 -2.1135 -0.3066 9 7 3.3214 -1.2367 0.3869 10 6 3.7605 -0.4035 1.3510 11 8 3.0215 0.4554 1.7960 12 6 5.1283 -0.5318 1.8638 13 6 5.9924 -1.5725 1.6509 14 7 7.1314 -1.2948 2.2883 15 6 7.0264 -0.1438 2.8956 16 7 5.7997 0.3667 2.6607 17 6 5.3096 1.6464 3.1771 18 6 6.2100 2.0894 4.3356 19 6 7.6763 2.0144 3.8992 20 6 8.0792 0.5437 3.7339 21 6 4.2488 -2.1774 -0.2465 22 6 3.6981 -3.0711 -1.3596 23 6 4.0271 -3.6693 0.0106 24 1 -0.4850 0.8401 0.0004 25 1 5.7893 -2.4591 1.0685 26 1 5.3379 2.3947 2.3851 27 1 4.2867 1.5283 3.5345 28 1 6.0514 1.4328 5.1910 29 1 5.9658 3.1145 4.6141 30 1 8.3058 2.4814 4.6565 31 1 7.8014 2.5351 2.9499 32 1 8.1395 0.0666 4.7121 33 1 9.0458 0.4808 3.2342 34 1 5.2777 -1.8308 -0.3422 35 1 2.6458 -2.9589 -1.6208 36 1 4.3648 -3.3128 -2.1873 37 1 4.9101 -4.3041 0.0836 38 1 3.1914 -3.9508 0.6513 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000560037191.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:26 Heat of formation + Delta-G solvation = 59.606029 kcal Electronic energy + Delta-G solvation = -22258.325787 eV Core-core repulsion = 19102.896387 eV Total energy + Delta-G solvation = -3155.429401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.48223 -40.93425 -38.41884 -37.50987 -35.11845 -34.11460 -33.63144 -31.10685 -30.12419 -27.13435 -25.25152 -24.58499 -23.38672 -23.10914 -22.25189 -21.69980 -19.86185 -19.71368 -18.21472 -17.52513 -17.23040 -16.86614 -16.24798 -15.94909 -15.49771 -15.41534 -15.19462 -15.12096 -14.87388 -14.66875 -14.52480 -13.85587 -13.26927 -13.08273 -12.93207 -12.61699 -12.28794 -12.19186 -12.07985 -12.04563 -11.98137 -11.67459 -11.36307 -11.19337 -10.80852 -10.60125 -10.44739 -9.64905 -9.38466 -8.46502 -6.22594 0.27487 1.26513 1.36201 1.50298 1.58963 1.83018 2.20333 2.51961 2.57309 2.84928 3.10336 3.28831 3.52612 3.61074 3.72400 3.82319 3.92109 4.04276 4.13366 4.21980 4.27350 4.41144 4.47633 4.49085 4.78676 4.82131 4.83488 4.85838 4.93516 5.04397 5.13529 5.22124 5.24589 5.36523 5.48899 5.55325 5.67995 6.13033 6.55360 6.65050 6.90036 7.16498 7.62727 8.52965 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.008232 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.038105 B = 3400.684458 C = 4587.409238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.031 3.969 3 Si 1.035 2.965 4 H -0.274 1.274 5 H -0.313 1.313 6 H -0.334 1.334 7 C -0.342 4.342 8 H 0.090 0.910 9 N -0.414 5.414 10 C 0.487 3.513 11 O -0.583 6.583 12 C -0.086 4.086 13 C 0.014 3.986 14 N -0.513 5.513 15 C 0.221 3.779 16 N -0.434 5.434 17 C 0.094 3.906 18 C -0.125 4.125 19 C -0.119 4.119 20 C -0.032 4.032 21 C 0.018 3.982 22 C -0.162 4.162 23 C -0.170 4.170 24 H 0.276 0.724 25 H 0.205 0.795 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.084 0.916 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.394 1.081 6.256 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.174 4.174 3 Si 0.877 3.123 4 H -0.205 1.205 5 H -0.242 1.242 6 H -0.269 1.269 7 C -0.468 4.468 8 H 0.108 0.892 9 N -0.129 5.129 10 C 0.282 3.718 11 O -0.477 6.477 12 C -0.203 4.203 13 C -0.138 4.138 14 N -0.232 5.232 15 C -0.041 4.041 16 N -0.115 5.115 17 C -0.028 4.028 18 C -0.162 4.162 19 C -0.157 4.157 20 C -0.070 4.070 21 C -0.086 4.086 22 C -0.199 4.199 23 C -0.208 4.208 24 H 0.085 0.915 25 H 0.222 0.778 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.102 0.898 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.445 1.152 6.495 19.589 hybrid contribution -1.591 1.075 -0.395 1.960 sum 16.854 2.226 6.100 18.062 Atomic orbital electron populations 1.69783 1.08038 1.29178 1.46508 1.26245 0.95831 1.02982 0.92303 0.83843 0.75688 0.78168 0.74562 1.20530 1.24155 1.26919 1.18830 0.84574 0.95776 1.47659 0.89222 1.42878 1.08416 1.32154 1.29431 1.17434 0.86675 0.85670 0.82040 1.90293 1.57991 1.36906 1.62470 1.20664 0.95814 0.96476 1.07320 1.23618 0.88793 0.99426 1.02012 1.69961 1.24910 1.14307 1.14005 1.24498 0.86638 0.92037 1.00974 1.45337 1.12486 1.17227 1.36486 1.22248 1.00257 0.81699 0.98563 1.21990 0.94787 1.04271 0.95201 1.21729 0.95256 0.94944 1.03744 1.20573 0.93902 0.94198 0.98357 1.22544 0.94485 0.88039 1.03530 1.23334 1.02810 1.00952 0.92811 1.23461 1.04422 0.93800 0.99145 0.91492 0.77832 0.90958 0.90786 0.90166 0.86756 0.85948 0.91578 0.87105 0.86713 0.84125 0.89797 0.84924 0.84315 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.72 13.96 21.68 0.30 -56.42 16 2 C 0.03 1.92 4.98 84.94 0.42 2.34 16 3 Si 1.03 58.08 24.05 68.60 1.65 59.73 16 4 H -0.27 -15.86 5.94 99.48 0.59 -15.27 16 5 H -0.31 -17.52 6.96 99.48 0.69 -16.82 16 6 H -0.33 -18.25 7.11 99.48 0.71 -17.54 16 7 C -0.34 -19.74 8.99 84.09 0.76 -18.98 16 8 H 0.09 5.32 6.81 -2.91 -0.02 5.30 16 9 N -0.41 -20.79 2.66 -617.62 -1.64 -22.43 16 10 C 0.49 25.08 6.06 86.44 0.52 25.61 16 11 O -0.58 -33.54 8.56 -4.45 -0.04 -33.57 16 12 C -0.09 -3.69 6.73 40.13 0.27 -3.42 16 13 C 0.01 0.53 9.77 84.14 0.82 1.35 16 14 N -0.51 -17.53 11.19 -186.54 -2.09 -19.61 16 15 C 0.22 6.73 7.64 138.28 1.06 7.78 16 16 N -0.43 -15.82 3.16 -501.13 -1.58 -17.40 16 17 C 0.09 3.00 6.29 86.48 0.54 3.55 16 18 C -0.13 -2.35 5.95 30.74 0.18 -2.16 16 19 C -0.12 -1.68 5.96 30.78 0.18 -1.50 16 20 C -0.03 -0.56 6.33 30.11 0.19 -0.37 16 21 C 0.02 0.67 4.37 45.00 0.20 0.87 16 22 C -0.16 -5.24 9.78 30.62 0.30 -4.94 16 23 C -0.17 -5.17 9.51 30.62 0.29 -4.88 16 24 H 0.28 16.47 8.31 -92.71 -0.77 15.70 16 25 H 0.21 6.54 4.39 -2.91 -0.01 6.53 16 26 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.07 2.83 7.16 -2.39 -0.02 2.81 16 28 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 29 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 32 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.14 4.79 5.68 -2.39 -0.01 4.77 16 35 H 0.08 3.24 6.45 -2.39 -0.02 3.23 16 36 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.14 3.01 8.09 -2.39 -0.02 3.00 16 38 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -79.75 296.04 3.29 -76.46 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.95 Total: 8.01 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 5.74 Total: 5.25 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -5.01 Total: -115.87 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.04 Total: -33.57 kcal Atomic # 14 Polarization: 58.08 SS G_CDS: 1.65 Total: 59.73 kcal Total: -79.75 3.29 -76.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560037191.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.065 kcal (2) G-P(sol) polarization free energy of solvation -79.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds