Wall clock time and date at job start Mon Mar 30 2020 02:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48500 * 109.47088 * 90.00226 * 3 2 1 5 5 H 1.48505 * 109.47152 * 209.99703 * 3 2 1 6 6 H 1.48494 * 109.47142 * 329.99703 * 3 2 1 7 7 C 1.38947 * 120.00367 * 180.26985 * 2 1 3 8 8 H 1.08004 * 119.99305 * 0.02562 * 7 2 1 9 9 N 1.37095 * 120.00240 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99970 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99980 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00150 * 179.97438 * 10 9 7 13 13 N 1.46892 * 109.47095 * 180.02562 * 12 10 9 14 14 C 1.47847 * 111.00483 * 290.84435 * 13 12 10 15 15 C 1.54895 * 104.79888 * 213.63910 * 14 13 12 16 16 C 1.55141 * 101.65565 * 37.06916 * 15 14 13 17 17 H 1.08998 * 110.70369 * 82.72759 * 16 15 14 18 18 C 1.50701 * 110.85603 * 205.89324 * 16 15 14 19 19 C 1.38653 * 120.79069 * 53.40568 * 18 16 15 20 20 C 1.38200 * 119.16129 * 179.75433 * 19 18 16 21 21 N 1.31864 * 120.76622 * 0.53117 * 20 19 18 22 22 C 1.31872 * 121.72717 * 359.73996 * 21 20 19 23 23 C 1.38206 * 120.76225 * 359.97438 * 22 21 20 24 24 C 1.47447 * 110.99828 * 170.00617 * 13 12 10 25 25 H 0.97005 * 120.00032 * 359.72583 * 1 2 3 26 26 H 0.96999 * 119.99986 * 0.02562 * 9 7 2 27 27 H 1.08993 * 109.47028 * 300.00805 * 12 10 9 28 28 H 1.09000 * 109.46643 * 60.00429 * 12 10 9 29 29 H 1.09009 * 110.36974 * 332.47347 * 14 13 12 30 30 H 1.08996 * 110.37149 * 94.80458 * 14 13 12 31 31 H 1.08999 * 110.99338 * 278.97683 * 15 14 13 32 32 H 1.09005 * 111.02468 * 155.17509 * 15 14 13 33 33 H 1.07997 * 120.41533 * 0.02562 * 19 18 16 34 34 H 1.08001 * 119.61537 * 180.29703 * 20 19 18 35 35 H 1.07997 * 119.62515 * 179.97438 * 22 21 20 36 36 H 1.08006 * 120.42247 * 179.97438 * 23 22 21 37 37 H 1.09001 * 109.88436 * 242.66402 * 24 13 12 38 38 H 1.08995 * 109.88796 * 3.68383 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 1.4001 5 1 3.5457 1.4403 -0.7000 6 1 1.4456 2.6527 -0.7001 7 6 2.0090 -1.2033 -0.0057 8 1 1.4689 -2.1386 -0.0105 9 7 3.3799 -1.2032 -0.0062 10 6 4.0538 -2.3704 -0.0122 11 8 3.4474 -3.4208 -0.0176 12 6 5.5609 -2.3704 -0.0134 13 7 6.0505 -3.7553 -0.0209 14 6 5.7651 -4.4253 1.2658 15 6 6.9575 -5.3899 1.4826 16 6 8.1407 -4.5561 0.9244 17 1 8.5071 -3.8563 1.6754 18 6 9.2529 -5.4547 0.4484 19 6 9.0035 -6.4729 -0.4592 20 6 10.0495 -7.2737 -0.8768 21 7 11.2700 -7.0848 -0.4146 22 6 11.5428 -6.1301 0.4532 23 6 10.5488 -5.2865 0.9118 24 6 7.5046 -3.8003 -0.2612 25 1 -0.4850 0.8401 0.0040 26 1 3.8649 -0.3632 -0.0022 27 1 5.9235 -1.8523 -0.9011 28 1 5.9248 -1.8608 0.8788 29 1 5.7174 -3.6935 2.0723 30 1 4.8313 -4.9841 1.2037 31 1 6.8246 -6.3094 0.9125 32 1 7.0978 -5.6064 2.5417 33 1 8.0054 -6.6352 -0.8382 34 1 9.8645 -8.0659 -1.5872 35 1 12.5546 -6.0060 0.8098 36 1 10.7783 -4.5067 1.6229 37 1 7.7104 -4.3295 -1.1916 38 1 7.9030 -2.7873 -0.3151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566424852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:32 Heat of formation + Delta-G solvation = 11.768427 kcal Electronic energy + Delta-G solvation = -20440.578670 eV Core-core repulsion = 17283.074875 eV Total energy + Delta-G solvation = -3157.503795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63516 -39.15429 -37.72744 -34.22667 -33.67694 -31.70068 -31.45380 -30.86581 -28.68555 -26.94559 -24.30794 -23.78548 -23.14129 -21.09698 -20.47399 -19.36840 -18.34075 -17.25590 -16.57679 -15.98515 -15.79549 -15.51864 -14.84171 -14.63311 -14.48927 -14.10569 -13.85257 -13.51500 -13.36178 -13.05593 -12.76373 -12.41818 -12.22883 -11.88768 -11.81278 -11.74920 -11.44208 -11.18961 -11.06537 -10.70790 -10.59999 -9.97887 -9.69823 -9.65748 -9.55318 -9.37064 -8.58285 -8.18163 -7.99928 -6.31027 -3.82351 0.91380 1.01455 3.01990 3.05678 3.14328 3.57025 3.74499 3.92897 4.09968 4.23551 4.28365 4.46505 4.54663 4.77310 4.83420 4.92767 4.94335 5.04708 5.20261 5.31610 5.36234 5.42898 5.46827 5.58570 5.63140 5.70306 5.76700 5.81297 5.89299 5.96683 6.02506 6.23494 6.38033 6.48231 7.11481 7.13917 7.58728 7.74931 8.14555 8.60670 8.95638 9.42748 9.84144 10.82201 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045184 B = 0.003208 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.539002 B = 8725.304269 C = 8994.712782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.277 1.277 7 C -0.303 4.303 8 H 0.120 0.880 9 N -0.593 5.593 10 C 0.453 3.547 11 O -0.558 6.558 12 C 0.037 3.963 13 N -0.504 5.504 14 C 0.051 3.949 15 C -0.120 4.120 16 C -0.077 4.077 17 H 0.086 0.914 18 C -0.021 4.021 19 C -0.164 4.164 20 C 0.098 3.902 21 N -0.493 5.493 22 C 0.097 3.903 23 C -0.173 4.173 24 C 0.051 3.949 25 H 0.273 0.727 26 H 0.370 0.630 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.140 0.860 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.132 0.868 37 H 0.080 0.920 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.622 -6.912 2.410 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.233 5.233 10 C 0.239 3.761 11 O -0.440 6.440 12 C -0.095 4.095 13 N -0.228 5.228 14 C -0.076 4.076 15 C -0.158 4.158 16 C -0.096 4.096 17 H 0.105 0.895 18 C -0.029 4.029 19 C -0.184 4.184 20 C -0.058 4.058 21 N -0.202 5.202 22 C -0.060 4.060 23 C -0.193 4.193 24 C -0.077 4.077 25 H 0.084 0.916 26 H 0.202 0.798 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.158 0.842 34 H 0.173 0.827 35 H 0.170 0.830 36 H 0.150 0.850 37 H 0.098 0.902 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 21.393 -8.299 1.701 23.009 hybrid contribution 0.314 2.584 0.926 2.762 sum 21.706 -5.716 2.628 22.600 Atomic orbital electron populations 1.69623 1.05627 1.27454 1.49555 1.25032 0.95484 0.97940 0.97740 0.86678 0.79809 0.84121 0.78815 1.19704 1.19504 1.20179 1.19421 0.79226 0.96606 1.47965 0.86288 1.42211 1.07522 1.06119 1.67442 1.19631 0.88015 0.84560 0.83904 1.90548 1.69361 1.30842 1.53201 1.22164 0.95815 0.89994 1.01504 1.63276 1.11327 1.14846 1.33330 1.23078 0.99102 0.96263 0.89161 1.22883 0.93057 0.98811 1.01094 1.21488 0.93456 0.96370 0.98335 0.89525 1.20160 0.94190 0.94507 0.94084 1.22125 1.01388 0.96264 0.98633 1.22773 0.87854 0.97856 0.97305 1.67666 1.22531 1.19292 1.10699 1.22723 0.99466 0.90727 0.93116 1.22077 0.93386 1.01619 1.02197 1.22976 0.87598 0.99487 0.97620 0.91639 0.79781 0.89288 0.93228 0.93810 0.88391 0.90203 0.90716 0.84231 0.82749 0.82956 0.84985 0.90165 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.29 27.74 -169.99 -4.72 14.58 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.56 10.16 -14.94 -0.15 -8.71 16 8 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 9 N -0.59 -14.06 5.09 -10.96 -0.06 -14.12 16 10 C 0.45 10.22 7.58 -10.98 -0.08 10.13 16 11 O -0.56 -14.78 14.61 5.55 0.08 -14.70 16 12 C 0.04 0.61 5.05 -4.98 -0.03 0.59 16 13 N -0.50 -7.79 4.86 -232.70 -1.13 -8.93 16 14 C 0.05 0.75 5.74 -2.30 -0.01 0.74 16 15 C -0.12 -1.32 6.47 -24.60 -0.16 -1.47 16 16 C -0.08 -0.76 3.18 -89.95 -0.29 -1.05 16 17 H 0.09 0.77 8.01 -51.93 -0.42 0.36 16 18 C -0.02 -0.20 4.93 -104.32 -0.51 -0.71 16 19 C -0.16 -1.57 8.31 -39.44 -0.33 -1.90 16 20 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 21 N -0.49 -5.32 10.36 -13.25 -0.14 -5.45 16 22 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 23 C -0.17 -1.48 9.78 -39.44 -0.39 -1.87 16 24 C 0.05 0.60 6.38 -2.84 -0.02 0.58 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 27 H 0.09 1.30 8.03 -51.93 -0.42 0.89 16 28 H 0.05 0.72 7.85 -51.93 -0.41 0.31 16 29 H 0.04 0.64 7.62 -51.92 -0.40 0.24 16 30 H 0.10 1.71 7.38 -51.93 -0.38 1.33 16 31 H 0.08 0.87 6.84 -51.93 -0.36 0.52 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.14 1.27 7.40 -52.49 -0.39 0.88 16 34 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 0.86 8.04 -52.48 -0.42 0.43 16 37 H 0.08 0.94 7.18 -51.93 -0.37 0.57 16 38 H 0.06 0.60 7.54 -51.93 -0.39 0.21 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -33.14 314.43 -7.91 -41.05 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.01 Total: 9.06 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.45 Total: -1.24 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.55 Total: -53.49 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.08 Total: -14.70 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.72 Total: 14.58 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.14 -7.91 -41.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566424852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.820 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds