Wall clock time and date at job start Mon Mar 30 2020 02:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48500 * 109.47088 * 90.00226 * 3 2 1 5 5 H 1.48505 * 109.47152 * 209.99703 * 3 2 1 6 6 H 1.48494 * 109.47142 * 329.99703 * 3 2 1 7 7 C 1.38947 * 120.00367 * 180.26985 * 2 1 3 8 8 H 1.08004 * 119.99305 * 0.02562 * 7 2 1 9 9 N 1.37095 * 120.00240 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99970 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99980 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00150 * 179.97438 * 10 9 7 13 13 N 1.46892 * 109.47095 * 180.02562 * 12 10 9 14 14 C 1.47847 * 111.00483 * 290.84435 * 13 12 10 15 15 C 1.54895 * 104.79888 * 213.63910 * 14 13 12 16 16 C 1.55141 * 101.65565 * 37.06916 * 15 14 13 17 17 H 1.08998 * 110.70369 * 82.72759 * 16 15 14 18 18 C 1.50701 * 110.85603 * 205.89324 * 16 15 14 19 19 C 1.38653 * 120.79069 * 53.40568 * 18 16 15 20 20 C 1.38200 * 119.16129 * 179.75433 * 19 18 16 21 21 N 1.31864 * 120.76622 * 0.53117 * 20 19 18 22 22 C 1.31872 * 121.72717 * 359.73996 * 21 20 19 23 23 C 1.38206 * 120.76225 * 359.97438 * 22 21 20 24 24 C 1.47447 * 110.99828 * 170.00617 * 13 12 10 25 25 H 0.97005 * 120.00032 * 359.72583 * 1 2 3 26 26 H 0.96999 * 119.99986 * 0.02562 * 9 7 2 27 27 H 1.08993 * 109.47028 * 300.00805 * 12 10 9 28 28 H 1.09000 * 109.46643 * 60.00429 * 12 10 9 29 29 H 1.09009 * 110.36974 * 332.47347 * 14 13 12 30 30 H 1.08996 * 110.37149 * 94.80458 * 14 13 12 31 31 H 1.08999 * 110.99338 * 278.97683 * 15 14 13 32 32 H 1.09005 * 111.02468 * 155.17509 * 15 14 13 33 33 H 1.07997 * 120.41533 * 0.02562 * 19 18 16 34 34 H 1.08001 * 119.61537 * 180.29703 * 20 19 18 35 35 H 1.07997 * 119.62515 * 179.97438 * 22 21 20 36 36 H 1.08006 * 120.42247 * 179.97438 * 23 22 21 37 37 H 1.09001 * 109.88436 * 242.66402 * 24 13 12 38 38 H 1.08995 * 109.88796 * 3.68383 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 1.4001 5 1 3.5457 1.4403 -0.7000 6 1 1.4456 2.6527 -0.7001 7 6 2.0090 -1.2033 -0.0057 8 1 1.4689 -2.1386 -0.0105 9 7 3.3799 -1.2032 -0.0062 10 6 4.0538 -2.3704 -0.0122 11 8 3.4474 -3.4208 -0.0176 12 6 5.5609 -2.3704 -0.0134 13 7 6.0505 -3.7553 -0.0209 14 6 5.7651 -4.4253 1.2658 15 6 6.9575 -5.3899 1.4826 16 6 8.1407 -4.5561 0.9244 17 1 8.5071 -3.8563 1.6754 18 6 9.2529 -5.4547 0.4484 19 6 9.0035 -6.4729 -0.4592 20 6 10.0495 -7.2737 -0.8768 21 7 11.2700 -7.0848 -0.4146 22 6 11.5428 -6.1301 0.4532 23 6 10.5488 -5.2865 0.9118 24 6 7.5046 -3.8003 -0.2612 25 1 -0.4850 0.8401 0.0040 26 1 3.8649 -0.3632 -0.0022 27 1 5.9235 -1.8523 -0.9011 28 1 5.9248 -1.8608 0.8788 29 1 5.7174 -3.6935 2.0723 30 1 4.8313 -4.9841 1.2037 31 1 6.8246 -6.3094 0.9125 32 1 7.0978 -5.6064 2.5417 33 1 8.0054 -6.6352 -0.8382 34 1 9.8645 -8.0659 -1.5872 35 1 12.5546 -6.0060 0.8098 36 1 10.7783 -4.5067 1.6229 37 1 7.7104 -4.3295 -1.1916 38 1 7.9030 -2.7873 -0.3151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566424852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:32 Heat of formation + Delta-G solvation = -13.158458 kcal Electronic energy + Delta-G solvation = -20441.659580 eV Core-core repulsion = 17283.074875 eV Total energy + Delta-G solvation = -3158.584706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41133 -40.50152 -39.15534 -36.01608 -34.83355 -33.74200 -32.15729 -31.86525 -29.64642 -28.39943 -25.97461 -24.55725 -23.95303 -22.25881 -21.28893 -21.23554 -20.21876 -18.13636 -17.59619 -17.37781 -16.86757 -16.48402 -16.31900 -16.07165 -15.63165 -15.16306 -14.82942 -14.65208 -14.50851 -14.45328 -14.19913 -14.07644 -13.44306 -13.09628 -12.94967 -12.68983 -12.54581 -12.43909 -12.40095 -12.11812 -11.97662 -11.63176 -11.48342 -10.47740 -10.38868 -10.30867 -10.23520 -10.02727 -9.19900 -8.40717 -6.01463 0.25969 0.31448 1.30243 1.35561 1.44707 1.97582 2.23398 2.65166 2.88443 3.15474 3.25354 3.47221 3.65419 3.69644 3.79178 4.01841 4.16325 4.21515 4.26479 4.30822 4.34745 4.41502 4.46514 4.53341 4.68932 4.78352 4.91799 4.96340 4.98396 5.07588 5.17491 5.20985 5.50714 5.53629 5.83375 5.91102 5.99951 6.10809 6.61043 6.89645 7.08163 7.41099 7.99003 8.77117 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045184 B = 0.003208 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.539002 B = 8725.304269 C = 8994.712782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.231 1.231 6 H -0.276 1.276 7 C -0.327 4.327 8 H 0.054 0.946 9 N -0.594 5.594 10 C 0.451 3.549 11 O -0.607 6.607 12 C 0.049 3.951 13 N -0.531 5.531 14 C 0.050 3.950 15 C -0.111 4.111 16 C -0.063 4.063 17 H 0.108 0.892 18 C -0.029 4.029 19 C -0.172 4.172 20 C 0.087 3.913 21 N -0.518 5.518 22 C 0.088 3.912 23 C -0.167 4.167 24 C 0.053 3.947 25 H 0.279 0.721 26 H 0.389 0.611 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.168 0.832 35 H 0.177 0.823 36 H 0.159 0.841 37 H 0.077 0.923 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.593 -4.739 2.936 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.215 4.215 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.154 1.154 6 H -0.201 1.201 7 C -0.456 4.456 8 H 0.072 0.928 9 N -0.236 5.236 10 C 0.238 3.762 11 O -0.491 6.491 12 C -0.082 4.082 13 N -0.256 5.256 14 C -0.077 4.077 15 C -0.149 4.149 16 C -0.082 4.082 17 H 0.126 0.874 18 C -0.037 4.037 19 C -0.191 4.191 20 C -0.068 4.068 21 N -0.228 5.228 22 C -0.068 4.068 23 C -0.187 4.187 24 C -0.074 4.074 25 H 0.088 0.912 26 H 0.225 0.775 27 H 0.136 0.864 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.155 0.845 34 H 0.186 0.814 35 H 0.194 0.806 36 H 0.176 0.824 37 H 0.095 0.905 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 25.400 -6.143 2.223 26.227 hybrid contribution -0.977 1.740 0.753 2.133 sum 24.423 -4.403 2.975 24.994 Atomic orbital electron populations 1.69811 1.08174 1.29212 1.50524 1.26124 0.96468 1.02748 0.96151 0.85358 0.79499 0.76674 0.79941 1.18079 1.15400 1.20127 1.18988 0.81524 0.94860 1.50216 0.92798 1.42038 1.05778 1.07584 1.68185 1.20941 0.90876 0.83306 0.81041 1.90536 1.71328 1.32701 1.54512 1.22087 0.90345 0.91450 1.04328 1.63127 1.14194 1.14380 1.33877 1.22945 0.98890 0.96743 0.89133 1.22799 0.92004 0.97876 1.02222 1.21388 0.92757 0.96201 0.97877 0.87428 1.20186 0.94626 0.94526 0.94384 1.22175 1.01301 0.96655 0.99002 1.23029 0.87724 0.98382 0.97704 1.67691 1.23028 1.20370 1.11686 1.23194 1.00854 0.90223 0.92575 1.22333 0.92571 1.01792 1.01987 1.22992 0.85141 1.01044 0.98244 0.91186 0.77531 0.86434 0.89938 0.93720 0.92702 0.90728 0.89039 0.84493 0.81446 0.80602 0.82369 0.90473 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.70 13.96 21.66 0.30 -56.40 16 2 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 3 Si 0.97 38.59 27.74 68.60 1.90 40.50 16 4 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 5 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 6 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.33 -19.20 10.16 84.04 0.85 -18.34 16 8 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 9 N -0.59 -27.96 5.09 -306.98 -1.56 -29.53 16 10 C 0.45 20.36 7.58 87.66 0.66 21.02 16 11 O -0.61 -33.76 14.61 -3.07 -0.04 -33.81 16 12 C 0.05 1.49 5.05 85.56 0.43 1.92 16 13 N -0.53 -15.61 4.86 -890.14 -4.33 -19.94 16 14 C 0.05 1.46 5.74 86.77 0.50 1.96 16 15 C -0.11 -2.25 6.47 31.98 0.21 -2.04 16 16 C -0.06 -1.04 3.18 -10.36 -0.03 -1.07 16 17 H 0.11 1.39 8.01 -2.39 -0.02 1.37 16 18 C -0.03 -0.47 4.93 -19.67 -0.10 -0.56 16 19 C -0.17 -3.04 8.31 22.36 0.19 -2.85 16 20 C 0.09 1.58 11.18 84.68 0.95 2.53 16 21 N -0.52 -10.30 10.36 -195.85 -2.03 -12.33 16 22 C 0.09 1.35 11.18 84.68 0.95 2.29 16 23 C -0.17 -2.27 9.78 22.36 0.22 -2.05 16 24 C 0.05 1.07 6.38 86.64 0.55 1.63 16 25 H 0.28 15.40 8.31 -92.70 -0.77 14.63 16 26 H 0.39 15.06 5.76 -92.71 -0.53 14.52 16 27 H 0.12 2.93 8.03 -2.39 -0.02 2.91 16 28 H 0.08 2.01 7.85 -2.39 -0.02 1.99 16 29 H 0.04 1.26 7.62 -2.38 -0.02 1.24 16 30 H 0.05 2.04 7.38 -2.39 -0.02 2.02 16 31 H 0.07 1.59 6.84 -2.39 -0.02 1.57 16 32 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.14 2.42 7.40 -2.91 -0.02 2.40 16 34 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.16 1.27 8.04 -2.91 -0.02 1.25 16 37 H 0.08 1.62 7.18 -2.39 -0.02 1.61 16 38 H 0.08 1.28 7.54 -2.39 -0.02 1.26 16 Total: -1.00 -78.40 314.43 0.56 -77.83 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.48 Total: 29.70 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 5.84 Total: 3.97 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -7.62 Total: -118.19 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.04 Total: -33.81 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 1.90 Total: 40.50 kcal Total: -78.40 0.56 -77.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566424852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.675 kcal (2) G-P(sol) polarization free energy of solvation -78.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds