Wall clock time and date at job start Mon Mar 30 2020 02:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86804 * 120.00107 * 2 1 4 4 H 1.48494 * 109.46991 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46893 * 300.00282 * 3 2 1 6 6 H 1.48498 * 109.46820 * 60.00059 * 3 2 1 7 7 C 1.38946 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00274 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00301 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00197 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00079 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99797 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46809 * 180.02562 * 12 10 9 14 14 C 1.47840 * 110.99988 * 49.16027 * 13 12 10 15 15 C 1.54906 * 104.79510 * 146.36231 * 14 13 12 16 16 C 1.55138 * 101.65573 * 322.92945 * 15 14 13 17 17 H 1.09003 * 110.70420 * 277.27538 * 16 15 14 18 18 C 1.50692 * 110.71039 * 154.03627 * 16 15 14 19 19 C 1.38651 * 120.79043 * 306.12009 * 18 16 15 20 20 C 1.38209 * 119.16480 * 179.75342 * 19 18 16 21 21 N 1.31866 * 120.76171 * 0.53342 * 20 19 18 22 22 C 1.31877 * 121.72770 * 359.73857 * 21 20 19 23 23 C 1.38203 * 120.75994 * 359.97438 * 22 21 20 24 24 C 1.47446 * 110.99737 * 170.00203 * 13 12 10 25 25 H 0.97005 * 120.00085 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00001 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.47093 * 60.00458 * 12 10 9 28 28 H 1.08997 * 109.47377 * 300.00055 * 12 10 9 29 29 H 1.08998 * 110.37675 * 265.18757 * 14 13 12 30 30 H 1.08993 * 110.37873 * 27.42361 * 14 13 12 31 31 H 1.09006 * 110.99331 * 81.02189 * 15 14 13 32 32 H 1.09000 * 110.99212 * 204.79653 * 15 14 13 33 33 H 1.08003 * 120.41858 * 0.02562 * 19 18 16 34 34 H 1.07998 * 119.62241 * 180.25451 * 20 19 18 35 35 H 1.08002 * 119.61590 * 179.97438 * 22 21 20 36 36 H 1.08004 * 120.41386 * 180.02562 * 23 22 21 37 37 H 1.08996 * 109.88895 * 356.15286 * 24 13 12 38 38 H 1.09001 * 109.88694 * 117.33682 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2437 -4.8630 -0.0010 13 7 2.1983 -5.9795 -0.0017 14 6 3.2294 -5.7956 1.0416 15 6 3.5628 -7.2290 1.5253 16 6 2.1693 -7.9088 1.4748 17 1 1.5985 -7.6850 2.3761 18 6 2.3090 -9.3974 1.2868 19 6 3.0505 -9.9135 0.2350 20 6 3.1607 -11.2843 0.0973 21 7 2.5622 -12.0975 0.9455 22 6 1.8447 -11.6423 1.9539 23 6 1.6946 -10.2837 2.1582 24 6 1.5115 -7.2620 0.2378 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3907 0.0002 27 1 0.6161 -4.9205 -0.8903 28 1 0.6181 -4.9209 0.8897 29 1 4.1158 -5.3217 0.6199 30 1 2.8353 -5.1981 1.8636 31 1 4.2607 -7.7180 0.8455 32 1 3.9554 -7.2166 2.5420 33 1 3.5396 -9.2525 -0.4653 34 1 3.7398 -11.6942 -0.7169 35 1 1.3688 -12.3393 2.6279 36 1 1.1060 -9.9171 2.9862 37 1 0.4532 -7.0857 0.4300 38 1 1.6297 -7.9133 -0.6282 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566424853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:35 Heat of formation + Delta-G solvation = -15.546328 kcal Electronic energy + Delta-G solvation = -20473.612396 eV Core-core repulsion = 17314.924144 eV Total energy + Delta-G solvation = -3158.688251 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43655 -40.53364 -39.01270 -36.03256 -34.77048 -33.32615 -32.14541 -31.82212 -29.60186 -28.27794 -26.15324 -24.55716 -23.95270 -22.33240 -21.28158 -21.03622 -19.87041 -18.13312 -17.62660 -17.29947 -16.74605 -16.47808 -16.33526 -16.11063 -15.60062 -15.51737 -14.83269 -14.60540 -14.52813 -14.25293 -14.03686 -13.57468 -13.43001 -13.19742 -12.92550 -12.67120 -12.54694 -12.41847 -12.37472 -12.15523 -12.06674 -11.63249 -11.49200 -10.46555 -10.39314 -10.13663 -10.02892 -10.00540 -9.22928 -8.47867 -5.96390 0.25907 0.31054 1.35670 1.41285 1.55293 2.03023 2.27875 2.83672 2.89300 3.19432 3.32048 3.48155 3.65595 3.70233 3.81116 4.02912 4.21199 4.24238 4.27352 4.33534 4.39817 4.43112 4.54002 4.57074 4.69951 4.78009 4.92782 4.97043 4.98435 5.09963 5.19921 5.28344 5.40646 5.50935 5.83010 5.88160 6.01350 6.13921 6.59274 7.07796 7.11803 7.54341 8.09788 8.69848 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.056722 B = 0.003041 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.518486 B = 9204.288897 C = 9361.847674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.614 6.614 12 C 0.050 3.950 13 N -0.525 5.525 14 C 0.063 3.937 15 C -0.115 4.115 16 C -0.065 4.065 17 H 0.098 0.902 18 C -0.028 4.028 19 C -0.170 4.170 20 C 0.089 3.911 21 N -0.517 5.517 22 C 0.089 3.911 23 C -0.170 4.170 24 C 0.051 3.949 25 H 0.278 0.722 26 H 0.396 0.604 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.024 0.976 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.172 0.828 35 H 0.177 0.823 36 H 0.154 0.846 37 H 0.071 0.929 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.237 -19.134 4.199 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.500 6.500 12 C -0.081 4.081 13 N -0.250 5.250 14 C -0.064 4.064 15 C -0.153 4.153 16 C -0.084 4.084 17 H 0.117 0.883 18 C -0.037 4.037 19 C -0.190 4.190 20 C -0.067 4.067 21 N -0.227 5.227 22 C -0.067 4.067 23 C -0.190 4.190 24 C -0.076 4.076 25 H 0.087 0.913 26 H 0.230 0.770 27 H 0.126 0.874 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.159 0.841 34 H 0.189 0.811 35 H 0.194 0.806 36 H 0.172 0.828 37 H 0.089 0.911 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.738 -19.872 3.581 20.206 hybrid contribution -0.638 2.114 0.739 2.329 sum 0.100 -17.758 4.320 18.276 Atomic orbital electron populations 1.69676 1.06842 1.29239 1.50432 1.26035 0.96535 1.02413 0.96316 0.84877 0.78044 0.77139 0.78319 1.19781 1.19644 1.19594 1.19686 0.92668 0.83929 1.49745 0.90281 1.41937 1.09316 1.04718 1.65071 1.20746 0.88351 0.86025 0.82336 1.90482 1.15503 1.87647 1.56411 1.22046 0.94278 0.88464 1.03290 1.63400 1.12413 1.01156 1.48014 1.22858 0.95965 0.95997 0.91599 1.22885 0.96222 0.93925 1.02259 1.21376 0.97438 0.90139 0.99487 0.88340 1.20163 0.94509 0.94922 0.94079 1.22183 1.00525 0.96986 0.99269 1.23068 0.96168 0.90031 0.97392 1.67698 1.09021 1.41224 1.04760 1.23167 0.94587 0.94408 0.94547 1.22317 1.01351 0.94236 1.01078 1.23045 0.97500 0.89826 0.97229 0.91300 0.77040 0.87420 0.91241 0.91418 0.95722 0.90139 0.89664 0.84139 0.81120 0.80615 0.82789 0.91107 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 42.78 29.55 68.60 2.03 44.80 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -29.30 5.29 -306.98 -1.62 -30.92 16 10 C 0.44 20.68 7.31 87.66 0.64 21.32 16 11 O -0.61 -33.19 13.13 -3.04 -0.04 -33.23 16 12 C 0.05 1.74 5.32 85.56 0.45 2.20 16 13 N -0.53 -16.77 5.21 -890.12 -4.64 -21.40 16 14 C 0.06 2.10 4.95 86.77 0.43 2.53 16 15 C -0.11 -2.68 6.46 31.98 0.21 -2.48 16 16 C -0.07 -1.29 3.19 -10.36 -0.03 -1.32 16 17 H 0.10 1.74 8.02 -2.39 -0.02 1.72 16 18 C -0.03 -0.52 4.93 -19.67 -0.10 -0.61 16 19 C -0.17 -3.13 8.28 22.36 0.19 -2.95 16 20 C 0.09 1.64 11.18 84.68 0.95 2.59 16 21 N -0.52 -10.67 10.36 -195.84 -2.03 -12.69 16 22 C 0.09 1.49 11.18 84.68 0.95 2.43 16 23 C -0.17 -2.68 9.78 22.36 0.22 -2.46 16 24 C 0.05 1.18 6.39 86.65 0.55 1.74 16 25 H 0.28 13.93 8.31 -92.70 -0.77 13.16 16 26 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 27 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 28 H 0.07 2.12 7.96 -2.39 -0.02 2.10 16 29 H 0.07 2.74 6.71 -2.39 -0.02 2.73 16 30 H 0.02 0.89 7.53 -2.39 -0.02 0.87 16 31 H 0.08 1.83 6.85 -2.38 -0.02 1.81 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.14 2.48 7.41 -2.91 -0.02 2.46 16 34 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.15 1.69 8.04 -2.91 -0.02 1.66 16 37 H 0.07 1.45 7.49 -2.39 -0.02 1.43 16 38 H 0.08 1.88 7.15 -2.39 -0.02 1.86 16 Total: -1.00 -67.67 314.98 0.06 -67.61 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.34 Total: 30.21 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 5.73 Total: 4.87 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -8.01 Total: -114.27 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.04 Total: -33.23 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -67.67 0.06 -67.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566424853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.065 kcal (2) G-P(sol) polarization free energy of solvation -67.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds