Wall clock time and date at job start Mon Mar 30 2020 01:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 120.00105 * 2 1 4 4 H 1.48510 * 109.47144 * 240.00038 * 3 2 1 5 5 H 1.48498 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47105 * 120.00322 * 3 2 1 7 7 C 1.39936 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00326 * 168.99357 * 7 2 1 9 9 C 1.41410 * 119.99599 * 348.99071 * 7 2 1 10 10 C 1.40770 * 120.21195 * 331.79630 * 9 7 2 11 11 C 1.37646 * 119.88584 * 180.02562 * 10 9 7 12 12 C 1.38526 * 120.31957 * 359.97438 * 11 10 9 13 13 C 1.39248 * 120.43177 * 0.02741 * 12 11 10 14 14 N 1.39955 * 119.94955 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99781 * 146.38787 * 14 13 12 16 16 O 1.21589 * 120.00163 * 354.82125 * 15 14 13 17 17 N 1.34773 * 119.99767 * 174.82158 * 15 14 13 18 18 C 1.46504 * 119.99981 * 180.02562 * 17 15 14 19 19 H 1.08994 * 110.27138 * 35.63427 * 18 17 15 20 20 C 1.54600 * 110.30706 * 157.82520 * 18 17 15 21 21 C 1.54945 * 102.91629 * 140.87482 * 20 18 17 22 22 N 1.48535 * 103.22677 * 322.58064 * 21 20 18 23 23 C 1.47906 * 105.81734 * 39.21118 * 22 21 20 24 24 C 1.38273 * 120.10203 * 0.22973 * 13 12 11 25 25 H 0.97006 * 120.00197 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.06347 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.83915 * 180.02562 * 11 10 9 28 28 H 1.07998 * 119.78783 * 179.97438 * 12 11 10 29 29 H 0.96996 * 120.00314 * 326.38862 * 14 13 12 30 30 H 0.97006 * 120.00344 * 359.97438 * 17 15 14 31 31 H 1.08991 * 110.72636 * 259.22731 * 20 18 17 32 32 H 1.09001 * 110.72542 * 22.52051 * 20 18 17 33 33 H 1.08995 * 110.66493 * 81.02296 * 21 20 18 34 34 H 1.09000 * 110.66272 * 204.15605 * 21 20 18 35 35 H 1.00892 * 111.00449 * 278.69646 * 22 21 20 36 36 H 1.08992 * 109.91669 * 215.30891 * 23 22 21 37 37 H 1.09004 * 109.91765 * 94.01950 * 23 22 21 38 38 H 1.08001 * 120.16028 * 179.72511 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6963 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0730 -1.2204 -0.1791 9 6 1.3203 -2.4253 0.2328 10 6 0.1511 -2.4375 1.0166 11 6 -0.5126 -3.6226 1.2399 12 6 -0.0359 -4.8042 0.6964 13 6 1.1194 -4.8074 -0.0810 14 7 1.5924 -6.0072 -0.6247 15 6 2.2054 -6.0076 -1.8250 16 8 2.2643 -4.9836 -2.4779 17 7 2.7531 -7.1431 -2.3015 18 6 3.4200 -7.1435 -3.6060 19 1 3.9363 -6.1971 -3.7664 20 6 4.4154 -8.3227 -3.6994 21 6 4.2377 -8.8111 -5.1591 22 7 2.7794 -8.6555 -5.3944 23 6 2.3963 -7.3912 -4.7294 24 6 1.8030 -3.6280 -0.3121 25 1 -0.4851 0.8401 0.0004 26 1 -0.2242 -1.5189 1.4428 27 1 -1.4098 -3.6310 1.8410 28 1 -0.5632 -5.7292 0.8774 29 1 1.4790 -6.8384 -0.1378 30 1 2.7064 -7.9600 -1.7805 31 1 5.4360 -7.9804 -3.5287 32 1 4.1483 -9.1097 -2.9941 33 1 4.8073 -8.1853 -5.8460 34 1 4.5333 -9.8560 -5.2537 35 1 2.2662 -9.4353 -5.0117 36 1 1.3958 -7.4823 -4.3067 37 1 2.4261 -6.5707 -5.4464 38 1 2.7016 -3.6301 -0.9112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568649330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:00 Heat of formation + Delta-G solvation = -25.834904 kcal Electronic energy + Delta-G solvation = -20623.896541 eV Core-core repulsion = 17464.762144 eV Total energy + Delta-G solvation = -3159.134397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59275 -39.79512 -38.76517 -36.18000 -35.17299 -34.62615 -31.73597 -30.64115 -29.97388 -28.56294 -27.23346 -23.85032 -22.91418 -22.67228 -21.73240 -21.47071 -19.61042 -19.26529 -18.01031 -17.41485 -16.81828 -16.64684 -16.42552 -16.01366 -15.77927 -15.28181 -14.90373 -14.84396 -14.66979 -14.01653 -13.65296 -13.30347 -13.11541 -12.92016 -12.82706 -12.66413 -12.53959 -12.40859 -12.22168 -12.00924 -11.82582 -11.59516 -11.31929 -11.05969 -10.72548 -10.48522 -9.49138 -9.35428 -8.67656 -8.55949 -6.38054 0.93758 1.02672 1.35735 1.48123 1.50897 1.64331 2.15701 2.22438 2.77271 3.17165 3.35185 3.60698 3.74722 3.91270 4.06187 4.25212 4.45616 4.47453 4.56443 4.63571 4.87734 4.92159 5.01346 5.05280 5.07112 5.12203 5.13716 5.18817 5.34099 5.50069 5.65977 5.73378 5.83504 6.06275 6.12479 6.17972 6.38213 6.42950 6.70163 6.95619 7.01490 7.09418 7.59170 8.38055 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023755 B = 0.003996 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.435919 B = 7005.473392 C = 7788.838128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.033 3.967 3 Si 0.985 3.015 4 H -0.267 1.267 5 H -0.262 1.262 6 H -0.256 1.256 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.088 3.912 10 C -0.195 4.195 11 C -0.092 4.092 12 C -0.247 4.247 13 C 0.174 3.826 14 N -0.669 5.669 15 C 0.692 3.308 16 O -0.617 6.617 17 N -0.717 5.717 18 C 0.130 3.870 19 H 0.065 0.935 20 C -0.149 4.149 21 C 0.045 3.955 22 N -0.677 5.677 23 C 0.036 3.964 24 C -0.234 4.234 25 H 0.287 0.713 26 H 0.106 0.894 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.418 0.582 30 H 0.413 0.587 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.348 0.652 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.568 -17.931 -3.449 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.186 1.186 6 H -0.181 1.181 7 C -0.534 4.534 8 H 0.082 0.918 9 C 0.086 3.914 10 C -0.215 4.215 11 C -0.111 4.111 12 C -0.269 4.269 13 C 0.080 3.920 14 N -0.317 5.317 15 C 0.392 3.608 16 O -0.496 6.496 17 N -0.375 5.375 18 C 0.022 3.978 19 H 0.083 0.917 20 C -0.189 4.189 21 C -0.084 4.084 22 N -0.306 5.306 23 C -0.095 4.095 24 C -0.256 4.256 25 H 0.098 0.902 26 H 0.124 0.876 27 H 0.142 0.858 28 H 0.151 0.849 29 H 0.256 0.744 30 H 0.250 0.750 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.164 0.836 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.481 -16.664 -4.790 18.185 hybrid contribution 0.169 0.256 1.238 1.276 sum 5.651 -16.408 -3.552 17.713 Atomic orbital electron populations 1.69849 1.08720 1.30339 1.36966 1.26725 0.95715 1.04318 0.91316 0.85221 0.78732 0.75611 0.79874 1.19146 1.18615 1.18051 1.19743 0.95823 0.92121 1.45746 0.91756 1.17834 0.92500 0.92374 0.88714 1.21365 0.99503 0.97491 1.03104 1.20849 0.98839 0.92179 0.99228 1.20456 0.98079 0.98685 1.09653 1.17283 0.93718 0.84715 0.96284 1.42318 1.60587 1.09601 1.19204 1.16265 0.78889 0.84356 0.81246 1.90986 1.64755 1.33780 1.60088 1.45003 1.60404 1.10289 1.21778 1.22195 0.93324 1.00581 0.81651 0.91664 1.23341 0.99328 0.96357 0.99837 1.23184 0.88635 1.03042 0.93533 1.62681 1.05725 1.04223 1.57930 1.23035 0.98269 0.93729 0.94508 1.20941 1.03475 0.93373 1.07857 0.90216 0.87595 0.85770 0.84911 0.74380 0.74968 0.89227 0.88495 0.90347 0.87561 0.83557 0.91904 0.91966 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.26 10.81 21.82 0.24 -46.02 16 2 C 0.03 1.77 5.25 85.25 0.45 2.22 16 3 Si 0.99 41.22 29.57 68.60 2.03 43.25 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.50 -29.94 9.06 23.46 0.21 -29.73 16 8 H 0.06 3.77 7.87 -2.91 -0.02 3.75 16 9 C 0.09 5.21 5.55 -21.31 -0.12 5.09 16 10 C -0.19 -10.67 8.66 22.75 0.20 -10.47 16 11 C -0.09 -4.25 10.02 22.20 0.22 -4.03 16 12 C -0.25 -10.43 9.97 22.58 0.23 -10.21 16 13 C 0.17 7.94 6.26 38.10 0.24 8.18 16 14 N -0.67 -23.10 5.35 -317.32 -1.70 -24.79 16 15 C 0.69 25.25 8.29 179.05 1.48 26.73 16 16 O -0.62 -30.29 13.75 -4.00 -0.05 -30.35 16 17 N -0.72 -17.05 5.03 -453.61 -2.28 -19.33 16 18 C 0.13 2.96 3.30 45.87 0.15 3.11 16 19 H 0.07 1.95 7.64 -2.39 -0.02 1.94 16 20 C -0.15 -1.98 6.77 31.80 0.22 -1.76 16 21 C 0.05 0.57 7.55 86.65 0.65 1.23 16 22 N -0.68 -11.56 7.51 -502.19 -3.77 -15.34 16 23 C 0.04 0.84 7.31 86.44 0.63 1.48 16 24 C -0.23 -12.97 8.39 22.85 0.19 -12.78 16 25 H 0.29 14.40 8.30 -92.70 -0.77 13.63 16 26 H 0.11 6.03 6.18 -2.91 -0.02 6.01 16 27 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 28 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 29 H 0.42 10.03 8.83 -92.71 -0.82 9.21 16 30 H 0.41 6.26 8.37 -92.70 -0.78 5.49 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 0.87 7.74 -2.39 -0.02 0.85 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.35 4.56 8.92 -89.70 -0.80 3.76 16 36 H 0.06 1.58 7.92 -2.39 -0.02 1.56 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 4.89 6.44 -2.91 -0.02 4.87 16 Total: -1.00 -75.87 316.61 -2.07 -77.95 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -1.28 Total: 35.57 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 4.75 Total: -20.93 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -7.51 Total: -105.48 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.05 Total: -30.35 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -75.87 -2.07 -77.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568649330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.110 kcal (2) G-P(sol) polarization free energy of solvation -75.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds