Wall clock time and date at job start Mon Mar 30 2020 01:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48499 * 109.47171 * 239.99924 * 3 2 1 5 5 H 1.48503 * 109.46899 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47565 * 119.99428 * 3 2 1 7 7 C 1.38952 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00342 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99684 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00292 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99315 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00402 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47194 * 179.97438 * 12 10 9 14 14 C 1.48813 * 111.18681 * 52.66331 * 13 12 10 15 15 C 1.54933 * 103.35205 * 159.50572 * 14 13 12 16 16 C 1.54594 * 102.91997 * 322.69117 * 15 14 13 17 17 H 1.09005 * 110.30718 * 263.04287 * 16 15 14 18 18 C 1.50700 * 110.39549 * 140.91819 * 16 15 14 19 19 C 1.38677 * 120.42016 * 123.95271 * 18 16 15 20 20 C 1.38629 * 118.41892 * 179.78628 * 19 18 16 21 21 C 1.38226 * 119.15863 * 0.50890 * 20 19 18 22 22 N 1.31853 * 120.76735 * 359.73106 * 21 20 19 23 23 C 1.31888 * 121.72213 * 359.97438 * 22 21 20 24 24 C 1.47905 * 111.00050 * 169.99666 * 13 12 10 25 25 H 0.97005 * 119.99744 * 0.02562 * 1 2 3 26 26 H 0.97004 * 120.00265 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.47620 * 59.99366 * 12 10 9 28 28 H 1.09011 * 109.46935 * 299.99480 * 12 10 9 29 29 H 1.08998 * 110.51915 * 41.07024 * 14 13 12 30 30 H 1.09004 * 110.69711 * 278.02347 * 14 13 12 31 31 H 1.08999 * 110.72416 * 204.32980 * 15 14 13 32 32 H 1.08998 * 110.87653 * 81.12010 * 15 14 13 33 33 H 1.08004 * 120.78831 * 0.02562 * 19 18 16 34 34 H 1.07999 * 120.41983 * 180.22131 * 20 19 18 35 35 H 1.08003 * 119.61664 * 179.70234 * 21 20 19 36 36 H 1.08003 * 119.61193 * 179.97438 * 23 22 21 37 37 H 1.09002 * 109.91668 * 94.80258 * 24 13 12 38 38 H 1.09002 * 109.91761 * 333.70433 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0010 13 7 2.1984 -5.9794 0.0017 14 6 3.1867 -5.8414 1.1057 15 6 3.7258 -7.2827 1.2857 16 6 2.4690 -8.1530 1.0554 17 1 2.0164 -8.4239 2.0093 18 6 2.8244 -9.3926 0.2754 19 6 2.5308 -10.6495 0.7824 20 6 2.8720 -11.7614 0.0281 21 6 3.4987 -11.5818 -1.1908 22 7 3.7670 -10.3714 -1.6394 23 6 3.4516 -9.2912 -0.9516 24 6 1.5091 -7.2660 0.2411 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 0.6181 -4.9209 -0.8896 28 1 0.6162 -4.9205 0.8904 29 1 2.6966 -5.4974 2.0165 30 1 3.9907 -5.1628 0.8205 31 1 4.1147 -7.4259 2.2938 32 1 4.4915 -7.5066 0.5430 33 1 2.0443 -10.7593 1.7404 34 1 2.6551 -12.7555 0.3903 35 1 3.7721 -12.4431 -1.7824 36 1 3.6878 -8.3160 -1.3514 37 1 1.2771 -7.7455 -0.7099 38 1 0.5918 -7.0965 0.8049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570678989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:40 Heat of formation + Delta-G solvation = 7.600259 kcal Electronic energy + Delta-G solvation = -20532.182157 eV Core-core repulsion = 17374.497617 eV Total energy + Delta-G solvation = -3157.684540 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.55098 -39.00197 -37.46211 -34.11586 -33.39760 -32.16929 -31.29684 -30.32126 -28.28297 -26.63366 -24.35492 -23.74502 -23.02894 -21.10867 -20.20215 -19.21926 -17.87349 -17.30157 -16.59274 -15.96810 -15.60086 -15.31133 -14.67578 -14.48445 -14.20573 -13.99206 -13.79795 -13.58059 -13.19715 -12.94992 -12.57432 -12.37527 -11.93196 -11.72032 -11.58058 -11.52515 -11.17027 -10.95576 -10.84622 -10.57212 -10.40478 -10.22266 -9.91075 -9.50763 -9.48631 -9.02873 -8.35501 -8.01951 -7.90338 -6.42755 -3.83643 0.98508 1.15234 3.19486 3.25434 3.29712 3.67550 3.88659 4.08244 4.27664 4.30385 4.58031 4.63517 4.74581 4.80081 4.90010 5.02270 5.12349 5.22465 5.26915 5.43845 5.48058 5.57764 5.69578 5.78694 5.81893 5.90532 5.94150 6.00526 6.09577 6.16957 6.26370 6.33666 6.59770 6.69315 7.22514 7.30106 7.54230 7.89111 8.04812 8.60495 9.16771 9.52680 10.04366 10.74875 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.050433 B = 0.003127 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.061476 B = 8950.696531 C = 9026.266615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.442 3.558 11 O -0.581 6.581 12 C 0.037 3.963 13 N -0.495 5.495 14 C 0.038 3.962 15 C -0.119 4.119 16 C -0.057 4.057 17 H 0.082 0.918 18 C -0.118 4.118 19 C -0.077 4.077 20 C -0.175 4.175 21 C 0.087 3.913 22 N -0.484 5.484 23 C 0.112 3.888 24 C 0.041 3.959 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.078 0.922 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -19.878 3.119 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.228 3.772 11 O -0.465 6.465 12 C -0.095 4.095 13 N -0.219 5.219 14 C -0.089 4.089 15 C -0.157 4.157 16 C -0.077 4.077 17 H 0.101 0.899 18 C -0.120 4.120 19 C -0.103 4.103 20 C -0.195 4.195 21 C -0.070 4.070 22 N -0.192 5.192 23 C -0.045 4.045 24 C -0.088 4.088 25 H 0.082 0.918 26 H 0.225 0.775 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.137 0.863 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.169 0.831 36 H 0.181 0.819 37 H 0.096 0.904 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.256 -19.593 1.786 19.803 hybrid contribution -1.320 0.675 1.655 2.222 sum 0.936 -18.918 3.441 19.252 Atomic orbital electron populations 1.69606 1.05958 1.28297 1.50439 1.25267 0.95628 0.99746 0.97259 0.85916 0.78767 0.80439 0.79090 1.19845 1.20982 1.19916 1.19654 0.93347 0.82197 1.47732 0.87914 1.41848 1.09203 1.04576 1.64154 1.19705 0.88359 0.84652 0.84519 1.90439 1.13700 1.86745 1.55652 1.22099 0.94568 0.91269 1.01578 1.64678 1.13180 0.99944 1.44107 1.23532 0.97520 0.96010 0.91803 1.22724 0.96294 0.94889 1.01766 1.20996 0.97219 0.91973 0.97506 0.89939 1.20852 0.99409 0.95050 0.96669 1.21520 0.97344 0.91914 0.99568 1.22097 1.01195 0.99635 0.96606 1.22763 0.95234 0.95127 0.93883 1.67763 1.17811 0.98936 1.34672 1.22863 0.93214 0.97685 0.90761 1.23032 0.95403 0.90965 0.99358 0.91796 0.77454 0.89209 0.93364 0.94526 0.86259 0.91171 0.90530 0.85100 0.85070 0.83090 0.81935 0.90399 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.15 5.29 -10.97 -0.06 -14.21 16 10 C 0.44 10.30 7.50 -10.99 -0.08 10.22 16 11 O -0.58 -15.17 13.12 5.54 0.07 -15.10 16 12 C 0.04 0.65 5.52 -4.98 -0.03 0.63 16 13 N -0.49 -8.16 5.27 -231.64 -1.22 -9.38 16 14 C 0.04 0.63 5.31 -1.74 -0.01 0.62 16 15 C -0.12 -1.49 6.50 -24.87 -0.16 -1.65 16 16 C -0.06 -0.64 3.22 -90.42 -0.29 -0.93 16 17 H 0.08 0.80 7.98 -51.93 -0.41 0.38 16 18 C -0.12 -1.30 4.72 -104.48 -0.49 -1.79 16 19 C -0.08 -0.71 9.82 -39.28 -0.39 -1.10 16 20 C -0.18 -1.50 10.11 -39.44 -0.40 -1.90 16 21 C 0.09 0.87 11.18 -17.55 -0.20 0.67 16 22 N -0.48 -6.21 10.36 -13.25 -0.14 -6.35 16 23 C 0.11 1.40 9.37 -17.55 -0.16 1.24 16 24 C 0.04 0.52 6.14 -2.75 -0.02 0.51 16 25 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.05 0.79 7.81 -51.92 -0.41 0.38 16 29 H 0.04 0.61 8.02 -51.93 -0.42 0.19 16 30 H 0.12 2.35 6.00 -51.93 -0.31 2.04 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.99 6.87 -51.93 -0.36 0.63 16 33 H 0.13 0.91 8.02 -52.48 -0.42 0.49 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.15 1.10 8.06 -52.48 -0.42 0.67 16 36 H 0.16 2.15 7.70 -52.48 -0.40 1.75 16 37 H 0.08 1.00 7.36 -51.93 -0.38 0.61 16 38 H 0.05 0.55 7.57 -51.93 -0.39 0.16 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -30.95 315.65 -8.38 -39.33 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.03 Total: 10.17 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.47 Total: -1.42 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.69 Total: -53.70 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.07 Total: -15.10 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.95 -8.38 -39.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570678989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.928 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds