Wall clock time and date at job start Mon Mar 30 2020 01:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48499 * 109.47171 * 239.99924 * 3 2 1 5 5 H 1.48503 * 109.46899 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47565 * 119.99428 * 3 2 1 7 7 C 1.38952 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00342 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99684 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00292 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99315 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00402 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47194 * 179.97438 * 12 10 9 14 14 C 1.48813 * 111.18681 * 52.66331 * 13 12 10 15 15 C 1.54933 * 103.35205 * 159.50572 * 14 13 12 16 16 C 1.54594 * 102.91997 * 322.69117 * 15 14 13 17 17 H 1.09005 * 110.30718 * 263.04287 * 16 15 14 18 18 C 1.50700 * 110.39549 * 140.91819 * 16 15 14 19 19 C 1.38677 * 120.42016 * 123.95271 * 18 16 15 20 20 C 1.38629 * 118.41892 * 179.78628 * 19 18 16 21 21 C 1.38226 * 119.15863 * 0.50890 * 20 19 18 22 22 N 1.31853 * 120.76735 * 359.73106 * 21 20 19 23 23 C 1.31888 * 121.72213 * 359.97438 * 22 21 20 24 24 C 1.47905 * 111.00050 * 169.99666 * 13 12 10 25 25 H 0.97005 * 119.99744 * 0.02562 * 1 2 3 26 26 H 0.97004 * 120.00265 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.47620 * 59.99366 * 12 10 9 28 28 H 1.09011 * 109.46935 * 299.99480 * 12 10 9 29 29 H 1.08998 * 110.51915 * 41.07024 * 14 13 12 30 30 H 1.09004 * 110.69711 * 278.02347 * 14 13 12 31 31 H 1.08999 * 110.72416 * 204.32980 * 15 14 13 32 32 H 1.08998 * 110.87653 * 81.12010 * 15 14 13 33 33 H 1.08004 * 120.78831 * 0.02562 * 19 18 16 34 34 H 1.07999 * 120.41983 * 180.22131 * 20 19 18 35 35 H 1.08003 * 119.61664 * 179.70234 * 21 20 19 36 36 H 1.08003 * 119.61193 * 179.97438 * 23 22 21 37 37 H 1.09002 * 109.91668 * 94.80258 * 24 13 12 38 38 H 1.09002 * 109.91761 * 333.70433 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0010 13 7 2.1984 -5.9794 0.0017 14 6 3.1867 -5.8414 1.1057 15 6 3.7258 -7.2827 1.2857 16 6 2.4690 -8.1530 1.0554 17 1 2.0164 -8.4239 2.0093 18 6 2.8244 -9.3926 0.2754 19 6 2.5308 -10.6495 0.7824 20 6 2.8720 -11.7614 0.0281 21 6 3.4987 -11.5818 -1.1908 22 7 3.7670 -10.3714 -1.6394 23 6 3.4516 -9.2912 -0.9516 24 6 1.5091 -7.2660 0.2411 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 0.6181 -4.9209 -0.8896 28 1 0.6162 -4.9205 0.8904 29 1 2.6966 -5.4974 2.0165 30 1 3.9907 -5.1628 0.8205 31 1 4.1147 -7.4259 2.2938 32 1 4.4915 -7.5066 0.5430 33 1 2.0443 -10.7593 1.7404 34 1 2.6551 -12.7555 0.3903 35 1 3.7721 -12.4431 -1.7824 36 1 3.6878 -8.3160 -1.3514 37 1 1.2771 -7.7455 -0.7099 38 1 0.5918 -7.0965 0.8049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570678989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:39 Heat of formation + Delta-G solvation = -14.592877 kcal Electronic energy + Delta-G solvation = -20533.144524 eV Core-core repulsion = 17374.497617 eV Total energy + Delta-G solvation = -3158.646907 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43450 -40.46616 -38.94232 -36.00797 -34.56921 -33.32669 -32.94899 -31.42343 -29.37800 -28.14955 -26.10066 -24.56253 -23.92580 -22.41921 -21.15757 -21.00696 -19.86417 -18.09925 -17.77462 -17.34465 -16.78572 -16.61092 -16.31501 -15.94381 -15.55565 -15.39980 -14.85423 -14.74139 -14.34975 -13.99401 -13.88169 -13.63526 -13.42503 -13.09286 -13.03680 -12.78106 -12.61354 -12.43450 -12.28595 -12.13371 -11.84729 -11.69148 -11.43965 -10.66858 -10.30820 -10.20312 -10.01508 -9.77430 -9.29724 -8.47080 -5.95699 0.21481 0.41640 1.39174 1.41203 1.52075 2.03827 2.28321 2.83710 2.92598 3.20020 3.34209 3.49178 3.71795 3.79512 3.89133 4.09576 4.14085 4.23545 4.29341 4.33795 4.39808 4.48366 4.56941 4.62845 4.68980 4.78857 4.92589 4.97431 5.06326 5.18987 5.27973 5.30047 5.40822 5.43622 5.85388 5.88590 5.98089 6.13138 6.60277 7.10657 7.12391 7.55047 8.11051 8.70236 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.050433 B = 0.003127 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.061476 B = 8950.696531 C = 9026.266615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.439 3.561 11 O -0.613 6.613 12 C 0.048 3.952 13 N -0.514 5.514 14 C 0.040 3.960 15 C -0.109 4.109 16 C -0.045 4.045 17 H 0.110 0.890 18 C -0.123 4.123 19 C -0.074 4.074 20 C -0.166 4.166 21 C 0.075 3.925 22 N -0.518 5.518 23 C 0.090 3.910 24 C 0.043 3.957 25 H 0.278 0.722 26 H 0.396 0.604 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.141 0.859 37 H 0.077 0.923 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 -21.963 4.338 22.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.499 6.499 12 C -0.083 4.083 13 N -0.239 5.239 14 C -0.088 4.088 15 C -0.147 4.147 16 C -0.065 4.065 17 H 0.129 0.871 18 C -0.125 4.125 19 C -0.100 4.100 20 C -0.185 4.185 21 C -0.081 4.081 22 N -0.227 5.227 23 C -0.066 4.066 24 C -0.085 4.085 25 H 0.087 0.913 26 H 0.230 0.770 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.179 0.821 34 H 0.185 0.815 35 H 0.192 0.808 36 H 0.158 0.842 37 H 0.096 0.904 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.181 -21.694 3.004 21.933 hybrid contribution -0.959 1.200 1.246 1.978 sum 0.222 -20.494 4.250 20.931 Atomic orbital electron populations 1.69669 1.06850 1.29366 1.50320 1.26038 0.96535 1.02412 0.96276 0.84996 0.77769 0.76669 0.78955 1.19800 1.19481 1.19608 1.19628 0.92711 0.83959 1.49942 0.90237 1.41921 1.09295 1.04688 1.65093 1.20715 0.88317 0.85973 0.82337 1.90443 1.15523 1.87590 1.56388 1.21988 0.94313 0.88688 1.03340 1.64622 1.13608 1.00960 1.44732 1.23325 0.96443 0.97680 0.91337 1.22624 0.96868 0.92562 1.02627 1.20938 0.95750 0.91378 0.98390 0.87144 1.20782 0.99813 0.95880 0.96052 1.21896 0.96480 0.91015 1.00598 1.22484 0.99336 1.01181 0.95498 1.23270 0.95078 0.94750 0.95028 1.67693 1.19143 1.00028 1.35868 1.22644 0.94925 0.97057 0.91975 1.23071 0.96166 0.89164 1.00095 0.91286 0.77049 0.87608 0.91113 0.94917 0.90553 0.89146 0.91565 0.82060 0.81541 0.80825 0.84184 0.90443 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.02 13.05 21.66 0.28 -49.73 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 3 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -29.65 5.29 -306.99 -1.62 -31.27 16 10 C 0.44 21.06 7.50 87.65 0.66 21.71 16 11 O -0.61 -33.60 13.12 -3.08 -0.04 -33.64 16 12 C 0.05 1.70 5.52 85.56 0.47 2.18 16 13 N -0.51 -16.94 5.27 -886.79 -4.67 -21.61 16 14 C 0.04 1.32 5.31 86.59 0.46 1.78 16 15 C -0.11 -2.65 6.50 31.80 0.21 -2.44 16 16 C -0.05 -0.90 3.22 -10.66 -0.03 -0.93 16 17 H 0.11 1.64 7.98 -2.38 -0.02 1.62 16 18 C -0.12 -2.46 4.72 -19.77 -0.09 -2.55 16 19 C -0.07 -1.08 9.82 22.47 0.22 -0.86 16 20 C -0.17 -2.20 10.11 22.36 0.23 -1.98 16 21 C 0.08 1.35 11.18 84.69 0.95 2.30 16 22 N -0.52 -13.12 10.36 -195.84 -2.03 -15.15 16 23 C 0.09 2.27 9.37 84.67 0.79 3.06 16 24 C 0.04 1.02 6.14 86.44 0.53 1.55 16 25 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 26 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 27 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 28 H 0.07 2.20 7.81 -2.38 -0.02 2.18 16 29 H 0.03 1.09 8.02 -2.39 -0.02 1.07 16 30 H 0.08 3.21 6.00 -2.38 -0.01 3.20 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.75 6.87 -2.39 -0.02 1.74 16 33 H 0.16 1.37 8.02 -2.91 -0.02 1.34 16 34 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 35 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 36 H 0.14 3.98 7.70 -2.91 -0.02 3.95 16 37 H 0.08 1.88 7.36 -2.39 -0.02 1.86 16 38 H 0.06 1.31 7.57 -2.39 -0.02 1.29 16 Total: -1.00 -69.62 315.65 -0.04 -69.66 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.34 Total: 31.14 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 5.67 Total: 5.40 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -8.04 Total: -117.77 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.04 Total: -33.64 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -69.62 -0.04 -69.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570678989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.072 kcal (2) G-P(sol) polarization free energy of solvation -69.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds