Wall clock time and date at job start Mon Mar 30 2020 02:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21277 * 119.99535 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00135 * 180.02562 * 12 11 10 15 15 C 1.52994 * 109.47153 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.47009 * 180.02562 * 15 14 12 17 17 C 1.38617 * 120.44646 * 124.72686 * 16 15 14 18 18 C 1.38573 * 118.39742 * 179.80601 * 17 16 15 19 19 N 1.32345 * 119.10856 * 0.46380 * 18 17 16 20 20 C 1.31781 * 120.81648 * 359.75417 * 19 18 17 21 21 N 1.31811 * 121.75307 * 0.02562 * 20 19 18 22 22 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 23 23 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 24 24 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 25 25 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 26 26 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 27 27 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 28 28 H 1.09005 * 109.47562 * 300.00761 * 14 12 11 29 29 H 1.09009 * 109.47031 * 60.00195 * 14 12 11 30 30 H 1.09003 * 109.47333 * 300.00142 * 15 14 12 31 31 H 1.09002 * 109.47261 * 60.00428 * 15 14 12 32 32 H 1.08001 * 120.80171 * 0.02562 * 17 16 15 33 33 H 1.08004 * 120.44953 * 180.21802 * 18 17 16 34 34 H 1.07997 * 119.12378 * 180.02562 * 20 19 18 35 35 H 1.09003 * 117.50034 * 359.97438 * 22 9 7 36 36 H 1.09002 * 117.49971 * 145.02730 * 22 9 7 37 37 H 1.08996 * 117.49810 * 214.97781 * 23 9 7 38 38 H 1.08995 * 117.50078 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0319 -3.9776 4.0171 14 6 3.3798 -4.0606 4.2415 15 6 3.0416 -4.6301 5.6206 16 6 4.3163 -4.9311 6.3662 17 6 4.5430 -4.3839 7.6194 18 6 5.7278 -4.6923 8.2687 19 7 6.6018 -5.4861 7.6708 20 6 6.3542 -5.9846 6.4763 21 7 5.2366 -5.7167 5.8309 22 6 1.5730 -3.5803 -0.9273 23 6 0.2453 -2.8218 -0.9979 24 1 -0.4850 0.8369 -0.0732 25 1 0.3749 -2.1616 2.0428 26 1 0.3013 -3.8500 1.4840 27 1 3.0162 -3.0718 1.8342 28 1 3.9646 -4.7900 3.6810 29 1 3.9580 -3.1439 4.3583 30 1 2.4567 -3.9010 6.1814 31 1 2.4637 -5.5469 5.5035 32 1 3.8123 -3.7358 8.0803 33 1 5.9369 -4.2870 9.2477 34 1 7.0865 -6.6298 6.0139 35 1 2.3246 -3.3504 -1.6826 36 1 1.5428 -4.6177 -0.5940 37 1 -0.6578 -3.3605 -0.7110 38 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571619206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:47 Heat of formation + Delta-G solvation = 20.997700 kcal Electronic energy + Delta-G solvation = -20135.900217 eV Core-core repulsion = 16978.796633 eV Total energy + Delta-G solvation = -3157.103583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21959 -39.14605 -36.75060 -35.06868 -33.30017 -32.94981 -31.98595 -31.14712 -27.05781 -25.65585 -24.75162 -24.44205 -22.19080 -21.15532 -19.73228 -19.22320 -17.79451 -17.18644 -16.55760 -15.92472 -15.67409 -15.44263 -15.08953 -14.78925 -14.62668 -13.96346 -13.87820 -13.54398 -13.06142 -12.76207 -12.49300 -12.13307 -11.81672 -11.58347 -11.27969 -11.04270 -10.99448 -10.97614 -10.70436 -10.56790 -10.25073 -9.83069 -9.63140 -9.45150 -9.29053 -9.06111 -8.51299 -8.28610 -8.10614 -6.09720 -4.19829 0.68831 0.82572 3.17690 3.24661 3.30851 3.31959 3.52593 3.73927 3.90070 3.96285 4.30880 4.34151 4.74703 4.82036 5.05199 5.10852 5.17700 5.22607 5.30062 5.39367 5.60683 5.69988 5.93117 6.00264 6.03086 6.18558 6.32741 6.46142 6.55116 6.69767 6.78193 6.85839 7.10746 7.25949 7.37918 7.51893 7.78608 7.86586 8.26624 8.31856 8.80611 8.84986 9.47412 10.97383 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021871 B = 0.003569 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.918663 B = 7844.009343 C = 8389.239113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.163 3.837 11 N -0.703 5.703 12 C 0.504 3.496 13 O -0.561 6.561 14 C -0.132 4.132 15 C -0.056 4.056 16 C 0.184 3.816 17 C -0.225 4.225 18 C 0.147 3.853 19 N -0.530 5.530 20 C 0.295 3.705 21 N -0.517 5.517 22 C -0.211 4.211 23 C -0.142 4.142 24 H 0.262 0.738 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.402 0.598 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.149 0.851 33 H 0.167 0.833 34 H 0.196 0.804 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.363 -8.167 11.977 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.023 3.977 10 C 0.040 3.960 11 N -0.351 5.351 12 C 0.290 3.710 13 O -0.441 6.441 14 C -0.172 4.172 15 C -0.095 4.095 16 C 0.038 3.962 17 C -0.247 4.247 18 C -0.018 4.018 19 N -0.244 5.244 20 C 0.007 3.993 21 N -0.231 5.231 22 C -0.248 4.248 23 C -0.181 4.181 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.236 0.764 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.167 0.833 33 H 0.184 0.816 34 H 0.212 0.788 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.078 -8.763 11.963 17.388 hybrid contribution 0.254 1.645 0.111 1.668 sum 9.332 -7.119 12.075 16.839 Atomic orbital electron populations 1.69977 1.05884 1.27001 1.48191 1.24986 0.94818 0.98951 0.94300 0.86690 0.79658 0.83184 0.78637 1.20263 1.21250 1.20178 1.20318 0.92601 0.88617 1.52369 0.92255 1.19034 0.99386 0.93294 0.85958 1.20995 0.84171 0.97889 0.92975 1.46001 1.11338 1.62594 1.15164 1.20444 0.90665 0.77773 0.82160 1.90655 1.31117 1.54315 1.68039 1.21531 0.97040 1.03068 0.95600 1.20378 0.91149 1.03331 0.94606 1.21872 0.94525 0.88575 0.91226 1.22859 1.00574 1.03737 0.97505 1.23226 0.88777 0.90727 0.99101 1.68412 1.33381 1.11006 1.11645 1.25002 0.92613 0.94218 0.87449 1.68270 1.02900 1.14959 1.36997 1.23021 1.00702 0.95592 1.05495 1.22466 0.90791 1.01324 1.03480 0.92794 0.91495 0.94185 0.76440 0.88081 0.89265 0.88906 0.88439 0.83328 0.81569 0.78797 0.90398 0.91706 0.91836 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.02 12.65 55.43 0.70 -23.31 16 2 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 3 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.50 -12.74 8.59 -34.44 -0.30 -13.03 16 8 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 9 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 10 C 0.16 3.63 5.50 -4.05 -0.02 3.61 16 11 N -0.70 -13.21 5.48 -60.30 -0.33 -13.54 16 12 C 0.50 8.85 7.83 -10.98 -0.09 8.77 16 13 O -0.56 -11.72 15.98 5.56 0.09 -11.63 16 14 C -0.13 -1.70 5.57 -27.89 -0.16 -1.86 16 15 C -0.06 -0.66 4.94 -27.88 -0.14 -0.80 16 16 C 0.18 2.02 6.21 -82.24 -0.51 1.51 16 17 C -0.22 -2.01 9.80 -39.32 -0.39 -2.40 16 18 C 0.15 1.27 11.30 -17.21 -0.19 1.07 16 19 N -0.53 -5.50 10.44 -14.58 -0.15 -5.66 16 20 C 0.30 3.00 12.29 -92.15 -1.13 1.86 16 21 N -0.52 -5.99 10.04 -10.80 -0.11 -6.10 16 22 C -0.21 -4.37 9.96 -26.69 -0.27 -4.63 16 23 C -0.14 -3.25 9.14 -26.69 -0.24 -3.50 16 24 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 25 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 26 H 0.04 0.89 8.09 -51.92 -0.42 0.47 16 27 H 0.40 6.93 8.33 -40.82 -0.34 6.59 16 28 H 0.10 1.23 7.98 -51.93 -0.41 0.82 16 29 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 30 H 0.09 1.05 7.90 -51.93 -0.41 0.64 16 31 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.15 0.98 8.01 -52.49 -0.42 0.56 16 33 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.20 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 LS Contribution 332.99 15.07 5.02 5.02 Total: -1.00 -30.64 332.99 -8.91 -39.56 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.35 Total: 7.60 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -3.76 Total: -7.24 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.11 Total: -48.61 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.64 -8.91 -39.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571619206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.555 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds