Wall clock time and date at job start Mon Mar 30 2020 02:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21277 * 119.99535 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00135 * 180.02562 * 12 11 10 15 15 C 1.52994 * 109.47153 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.47009 * 180.02562 * 15 14 12 17 17 C 1.38617 * 120.44646 * 124.72686 * 16 15 14 18 18 C 1.38573 * 118.39742 * 179.80601 * 17 16 15 19 19 N 1.32345 * 119.10856 * 0.46380 * 18 17 16 20 20 C 1.31781 * 120.81648 * 359.75417 * 19 18 17 21 21 N 1.31811 * 121.75307 * 0.02562 * 20 19 18 22 22 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 23 23 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 24 24 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 25 25 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 26 26 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 27 27 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 28 28 H 1.09005 * 109.47562 * 300.00761 * 14 12 11 29 29 H 1.09009 * 109.47031 * 60.00195 * 14 12 11 30 30 H 1.09003 * 109.47333 * 300.00142 * 15 14 12 31 31 H 1.09002 * 109.47261 * 60.00428 * 15 14 12 32 32 H 1.08001 * 120.80171 * 0.02562 * 17 16 15 33 33 H 1.08004 * 120.44953 * 180.21802 * 18 17 16 34 34 H 1.07997 * 119.12378 * 180.02562 * 20 19 18 35 35 H 1.09003 * 117.50034 * 359.97438 * 22 9 7 36 36 H 1.09002 * 117.49971 * 145.02730 * 22 9 7 37 37 H 1.08996 * 117.49810 * 214.97781 * 23 9 7 38 38 H 1.08995 * 117.50078 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0319 -3.9776 4.0171 14 6 3.3798 -4.0606 4.2415 15 6 3.0416 -4.6301 5.6206 16 6 4.3163 -4.9311 6.3662 17 6 4.5430 -4.3839 7.6194 18 6 5.7278 -4.6923 8.2687 19 7 6.6018 -5.4861 7.6708 20 6 6.3542 -5.9846 6.4763 21 7 5.2366 -5.7167 5.8309 22 6 1.5730 -3.5803 -0.9273 23 6 0.2453 -2.8218 -0.9979 24 1 -0.4850 0.8369 -0.0732 25 1 0.3749 -2.1616 2.0428 26 1 0.3013 -3.8500 1.4840 27 1 3.0162 -3.0718 1.8342 28 1 3.9646 -4.7900 3.6810 29 1 3.9580 -3.1439 4.3583 30 1 2.4567 -3.9010 6.1814 31 1 2.4637 -5.5469 5.5035 32 1 3.8123 -3.7358 8.0803 33 1 5.9369 -4.2870 9.2477 34 1 7.0865 -6.6298 6.0139 35 1 2.3246 -3.3504 -1.6826 36 1 1.5428 -4.6177 -0.5940 37 1 -0.6578 -3.3605 -0.7110 38 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571619206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:47 Heat of formation + Delta-G solvation = 2.573997 kcal Electronic energy + Delta-G solvation = -20136.699129 eV Core-core repulsion = 16978.796633 eV Total energy + Delta-G solvation = -3157.902495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.95714 -40.62843 -38.49888 -35.96130 -34.92178 -33.95354 -33.71784 -32.07025 -28.53684 -27.42570 -25.98096 -25.24632 -23.15796 -22.86594 -21.35824 -20.87495 -18.63442 -18.29969 -18.02550 -17.24266 -16.79656 -16.54210 -16.50349 -16.31452 -15.83639 -15.44920 -15.01245 -14.64066 -14.37976 -14.27083 -13.68830 -13.55995 -13.38359 -13.12726 -12.92793 -12.79235 -12.38685 -12.25829 -12.02286 -11.77955 -11.52245 -11.41647 -10.94645 -10.89280 -10.51963 -10.43282 -10.19290 -10.02755 -9.81582 -8.08787 -6.23387 -0.02698 0.10948 1.44130 1.45392 1.51831 1.75373 2.36164 2.44020 2.83845 3.08540 3.19067 3.32965 3.48063 3.59182 3.83279 4.11226 4.16123 4.20171 4.26926 4.29360 4.55477 4.64052 4.66385 4.66858 4.74037 4.80158 4.99452 5.00487 5.05519 5.08865 5.29068 5.47758 5.56559 5.61619 5.71718 5.78724 6.06808 6.37224 6.77862 6.85246 7.14295 7.39496 7.46678 8.97956 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021871 B = 0.003569 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.918663 B = 7844.009343 C = 8389.239113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.004 3.996 10 C 0.179 3.821 11 N -0.701 5.701 12 C 0.503 3.497 13 O -0.596 6.596 14 C -0.117 4.117 15 C -0.050 4.050 16 C 0.168 3.832 17 C -0.222 4.222 18 C 0.146 3.854 19 N -0.545 5.545 20 C 0.286 3.714 21 N -0.538 5.538 22 C -0.178 4.178 23 C -0.155 4.155 24 H 0.259 0.741 25 H 0.027 0.973 26 H 0.037 0.963 27 H 0.411 0.589 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.172 0.828 33 H 0.200 0.800 34 H 0.217 0.783 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.444 -8.426 12.971 19.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.003 3.997 10 C 0.054 3.946 11 N -0.351 5.351 12 C 0.291 3.709 13 O -0.478 6.478 14 C -0.157 4.157 15 C -0.089 4.089 16 C 0.022 3.978 17 C -0.243 4.243 18 C -0.019 4.019 19 N -0.260 5.260 20 C -0.001 4.001 21 N -0.253 5.253 22 C -0.215 4.215 23 C -0.193 4.193 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.246 0.754 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.189 0.811 33 H 0.217 0.783 34 H 0.233 0.767 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.196 -9.033 12.953 19.358 hybrid contribution -0.388 1.681 -0.161 1.732 sum 10.807 -7.352 12.793 18.290 Atomic orbital electron populations 1.70107 1.07258 1.27378 1.49773 1.25702 0.95470 1.02064 0.94363 0.85746 0.78381 0.79412 0.78868 1.19552 1.21751 1.19576 1.20649 0.92970 0.89568 1.51223 0.91804 1.19074 1.00066 0.93897 0.86647 1.20547 0.85310 0.96251 0.92456 1.45920 1.10511 1.62936 1.15685 1.21239 0.91822 0.76301 0.81507 1.90638 1.33020 1.55526 1.68635 1.21467 0.94354 1.04157 0.95712 1.20269 0.91780 1.02774 0.94058 1.21791 0.94190 0.89562 0.92207 1.23108 1.01178 1.03399 0.96644 1.23813 0.88147 0.89788 1.00110 1.68480 1.34083 1.11596 1.11837 1.25463 0.92648 0.94419 0.87597 1.68241 1.03562 1.15623 1.37853 1.23002 0.98883 0.95950 1.03706 1.22387 0.92103 1.01823 1.02996 0.93204 0.95501 0.94466 0.75372 0.86882 0.87641 0.88630 0.89649 0.81063 0.78320 0.76672 0.89735 0.89425 0.91325 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.83 12.65 21.45 0.27 -50.56 16 2 C 0.02 1.30 5.43 84.65 0.46 1.76 16 3 Si 0.95 41.60 29.54 68.60 2.03 43.63 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.51 -25.52 8.59 25.60 0.22 -25.30 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 9 C 0.00 0.18 1.47 -52.93 -0.08 0.10 16 10 C 0.18 8.04 5.50 86.38 0.48 8.52 16 11 N -0.70 -25.91 5.48 -463.07 -2.54 -28.45 16 12 C 0.50 17.36 7.83 87.66 0.69 18.04 16 13 O -0.60 -25.01 15.98 -3.02 -0.05 -25.06 16 14 C -0.12 -2.83 5.57 29.85 0.17 -2.66 16 15 C -0.05 -1.12 4.94 29.85 0.15 -0.98 16 16 C 0.17 3.40 6.21 42.58 0.26 3.66 16 17 C -0.22 -3.42 9.80 22.44 0.22 -3.20 16 18 C 0.15 2.12 11.30 84.70 0.96 3.08 16 19 N -0.55 -10.15 10.44 -200.05 -2.09 -12.24 16 20 C 0.29 5.31 12.29 180.88 2.22 7.53 16 21 N -0.54 -11.62 10.04 -188.07 -1.89 -13.50 16 22 C -0.18 -7.09 9.96 30.62 0.30 -6.79 16 23 C -0.15 -7.09 9.14 30.62 0.28 -6.81 16 24 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 25 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.67 8.09 -2.38 -0.02 1.65 16 27 H 0.41 13.61 8.33 -92.71 -0.77 12.83 16 28 H 0.11 2.53 7.98 -2.38 -0.02 2.51 16 29 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.10 2.05 7.90 -2.39 -0.02 2.03 16 31 H 0.09 2.10 8.10 -2.39 -0.02 2.08 16 32 H 0.17 1.75 8.01 -2.91 -0.02 1.73 16 33 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.22 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -66.01 332.99 2.35 -63.65 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.29 Total: 25.56 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 6.33 Total: -3.04 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -6.24 Total: -104.74 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -66.01 2.35 -63.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571619206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.228 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds