Wall clock time and date at job start Mon Mar 30 2020 02:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00297 * 2 1 4 4 H 1.48502 * 109.47018 * 273.11612 * 3 2 1 5 5 H 1.48504 * 109.46991 * 33.11385 * 3 2 1 6 6 H 1.48499 * 109.47148 * 153.11383 * 3 2 1 7 7 C 1.37883 * 119.99487 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00851 * 354.15212 * 7 2 1 9 9 C 1.50703 * 119.99414 * 174.42446 * 7 2 1 10 10 C 1.53000 * 115.55331 * 294.56871 * 9 7 2 11 11 N 1.46492 * 109.47112 * 294.93683 * 10 9 7 12 12 C 1.34781 * 120.00065 * 183.82356 * 11 10 9 13 13 O 1.21280 * 119.99601 * 5.07859 * 12 11 10 14 14 C 1.50693 * 120.00227 * 185.07332 * 12 11 10 15 15 C 1.53004 * 109.47428 * 185.63807 * 14 12 11 16 16 C 1.50702 * 109.47283 * 180.02562 * 15 14 12 17 17 C 1.38387 * 120.00113 * 124.99961 * 16 15 14 18 18 N 1.32120 * 120.00198 * 179.97438 * 17 16 15 19 19 C 1.32157 * 119.99571 * 0.02562 * 18 17 16 20 20 C 1.38341 * 120.00196 * 359.97438 * 19 18 17 21 21 N 1.32124 * 120.00106 * 304.72451 * 16 15 14 22 22 C 1.53005 * 117.49626 * 148.90251 * 9 7 2 23 23 C 1.53001 * 117.49600 * 80.24130 * 9 7 2 24 24 H 0.96998 * 120.00070 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46610 * 54.94045 * 10 9 7 26 26 H 1.09001 * 109.46719 * 174.93463 * 10 9 7 27 27 H 0.97007 * 120.00284 * 3.82973 * 11 10 9 28 28 H 1.09007 * 109.47396 * 305.63843 * 14 12 11 29 29 H 1.08998 * 109.47285 * 65.63919 * 14 12 11 30 30 H 1.08998 * 109.46776 * 300.00522 * 15 14 12 31 31 H 1.08998 * 109.46796 * 59.99813 * 15 14 12 32 32 H 1.08008 * 119.99827 * 359.95970 * 17 16 15 33 33 H 1.07996 * 119.99585 * 180.02562 * 19 18 17 34 34 H 1.08001 * 119.99578 * 180.02562 * 20 19 18 35 35 H 1.09002 * 117.49847 * 359.97438 * 22 9 7 36 36 H 1.08997 * 117.49813 * 145.02101 * 22 9 7 37 37 H 1.09003 * 117.49800 * 214.97304 * 23 9 7 38 38 H 1.08995 * 117.50224 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4307 2.0844 -1.3980 5 1 1.4811 2.6327 0.7649 6 1 3.5781 1.4219 0.6331 7 6 2.0044 -1.1942 -0.0005 8 1 1.4687 -2.1271 0.0943 9 6 3.5061 -1.1972 -0.1273 10 6 4.0569 -0.6857 -1.4600 11 7 3.6483 -1.5908 -2.5369 12 6 4.0846 -1.3817 -3.7949 13 8 4.8875 -0.5009 -4.0196 14 6 3.5748 -2.2422 -4.9220 15 6 4.3255 -1.8943 -6.2091 16 6 3.8152 -2.7544 -7.3364 17 6 3.3439 -2.1661 -8.4970 18 7 2.8970 -2.9202 -9.4855 19 6 2.8997 -4.2364 -9.3658 20 6 3.3710 -4.8244 -8.2056 21 7 3.8230 -4.0704 -7.2190 22 6 4.2714 -2.3257 0.5668 23 6 4.3220 -0.9044 1.1334 24 1 -0.4850 0.8400 -0.0004 25 1 3.6651 0.3125 -1.6558 26 1 5.1451 -0.6459 -1.4120 27 1 3.0636 -2.3406 -2.3447 28 1 3.7371 -3.2925 -4.6794 29 1 2.5091 -2.0624 -5.0632 30 1 4.1633 -0.8441 -6.4517 31 1 5.3912 -2.0741 -6.0680 32 1 3.3411 -1.0905 -8.5945 33 1 2.5349 -4.8528 -10.1740 34 1 3.3735 -5.9000 -8.1080 35 1 3.6887 -3.0656 1.1156 36 1 5.1674 -2.7033 0.0743 37 1 5.2515 -0.3478 1.0134 38 1 3.7728 -0.7093 2.0544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577014937.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:44 Heat of formation + Delta-G solvation = 25.345283 kcal Electronic energy + Delta-G solvation = -20304.300380 eV Core-core repulsion = 17147.385322 eV Total energy + Delta-G solvation = -3156.915058 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29683 -39.26287 -37.08376 -35.04044 -33.62630 -33.40347 -32.20983 -30.60240 -27.24730 -25.82674 -24.92212 -24.43544 -22.16921 -21.61515 -19.80358 -19.13339 -17.79697 -17.22595 -16.96170 -16.48095 -15.63722 -15.52161 -15.23970 -14.92042 -14.72748 -13.98186 -13.65933 -13.38122 -13.04757 -12.84843 -12.53766 -12.30661 -12.14821 -11.95368 -11.78622 -11.42210 -11.09527 -11.07468 -10.73774 -10.61539 -10.28720 -9.68922 -9.51529 -9.34232 -9.25003 -9.16015 -8.80791 -8.52514 -8.30319 -6.20260 -4.23229 0.54071 0.91146 3.08757 3.26380 3.36578 3.42329 3.43828 3.68033 3.87802 4.05210 4.27052 4.36547 4.57746 4.84159 4.85933 5.00550 5.12971 5.16902 5.20260 5.29007 5.44582 5.65727 5.71143 5.92090 5.96237 6.00036 6.11570 6.17711 6.22241 6.43180 6.49760 6.69118 6.92579 7.04428 7.04879 7.14319 7.55929 7.64665 8.15539 8.38494 8.74029 8.81313 9.43319 10.90737 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.003728 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.538144 B = 7509.254695 C = 7745.165684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.083 3.917 3 Si 0.866 3.134 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.248 1.248 7 C -0.490 4.490 8 H 0.078 0.922 9 C -0.018 4.018 10 C 0.153 3.847 11 N -0.701 5.701 12 C 0.507 3.493 13 O -0.562 6.562 14 C -0.132 4.132 15 C -0.051 4.051 16 C 0.089 3.911 17 C 0.053 3.947 18 N -0.438 5.438 19 C 0.036 3.964 20 C 0.055 3.945 21 N -0.435 5.435 22 C -0.180 4.180 23 C -0.185 4.185 24 H 0.266 0.734 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.407 0.593 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.717 -7.745 -14.180 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.120 4.120 3 Si 0.693 3.307 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.172 1.172 7 C -0.527 4.527 8 H 0.096 0.904 9 C -0.020 4.020 10 C 0.030 3.970 11 N -0.350 5.350 12 C 0.293 3.707 13 O -0.442 6.442 14 C -0.173 4.173 15 C -0.089 4.089 16 C -0.051 4.051 17 C -0.107 4.107 18 N -0.152 5.152 19 C -0.123 4.123 20 C -0.105 4.105 21 N -0.151 5.151 22 C -0.217 4.217 23 C -0.223 4.223 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.242 0.758 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.188 0.812 33 H 0.185 0.815 34 H 0.187 0.813 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.093 -6.987 -14.324 17.444 hybrid contribution -0.082 0.511 0.116 0.530 sum 7.010 -6.477 -14.207 17.115 Atomic orbital electron populations 1.69889 1.06396 1.27302 1.49321 1.24914 0.94503 0.99092 0.93517 0.87034 0.81570 0.83546 0.78524 1.20405 1.21798 1.17189 1.20238 0.86539 0.94602 1.51364 0.90417 1.19617 0.94802 0.99163 0.88376 1.21075 0.96890 0.92631 0.86437 1.45863 1.50281 1.31648 1.07206 1.20506 0.81483 0.84641 0.84074 1.90649 1.34672 1.34699 1.84147 1.21541 1.01566 1.01402 0.92748 1.20273 1.00916 0.97984 0.89764 1.22412 0.95114 0.91382 0.96196 1.23698 0.95464 1.01735 0.89849 1.68451 1.11259 1.06204 1.29275 1.23748 0.97919 0.92008 0.98669 1.23803 0.94893 1.01641 0.90212 1.68293 1.11921 1.05563 1.29317 1.22803 1.01520 0.91869 1.05535 1.23033 1.01230 0.98157 0.99915 0.92447 0.92566 0.93254 0.75758 0.88205 0.88842 0.88814 0.88820 0.81235 0.81499 0.81338 0.89617 0.90888 0.91115 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 2 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 3 Si 0.87 21.03 24.97 -169.99 -4.25 16.79 16 4 H -0.28 -6.86 7.01 56.52 0.40 -6.47 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.25 -5.67 5.73 56.52 0.32 -5.35 16 7 C -0.49 -12.71 9.16 -34.44 -0.32 -13.03 16 8 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 9 C -0.02 -0.40 0.84 -155.66 -0.13 -0.53 16 10 C 0.15 3.24 5.15 -4.05 -0.02 3.21 16 11 N -0.70 -13.06 5.48 -60.30 -0.33 -13.39 16 12 C 0.51 8.86 7.82 -10.99 -0.09 8.77 16 13 O -0.56 -11.48 15.98 5.56 0.09 -11.39 16 14 C -0.13 -1.73 5.57 -27.88 -0.16 -1.89 16 15 C -0.05 -0.60 4.94 -27.88 -0.14 -0.73 16 16 C 0.09 1.00 6.17 -82.41 -0.51 0.49 16 17 C 0.05 0.55 10.85 -17.37 -0.19 0.36 16 18 N -0.44 -4.75 10.50 -13.06 -0.14 -4.89 16 19 C 0.04 0.31 11.22 -17.37 -0.20 0.11 16 20 C 0.05 0.48 11.22 -17.38 -0.20 0.28 16 21 N -0.44 -4.95 10.06 -9.29 -0.09 -5.05 16 22 C -0.18 -3.42 9.96 -26.69 -0.27 -3.68 16 23 C -0.19 -3.75 8.03 -26.69 -0.21 -3.96 16 24 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 25 H 0.06 1.31 5.05 -51.93 -0.26 1.05 16 26 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 27 H 0.41 7.12 8.34 -40.82 -0.34 6.77 16 28 H 0.10 1.21 7.97 -51.92 -0.41 0.80 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.06 7.78 -51.93 -0.40 0.66 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.17 1.40 7.95 -52.48 -0.42 0.98 16 33 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 323.70 15.07 4.88 4.88 Total: -1.00 -32.09 323.70 -6.86 -38.94 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.28 Total: 7.82 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -2.51 Total: -8.42 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.21 Total: -48.62 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.25 Total: 16.79 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.09 -6.86 -38.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577014937.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.289 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds