Wall clock time and date at job start Mon Mar 30 2020 02:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00297 * 2 1 4 4 H 1.48502 * 109.47018 * 273.11612 * 3 2 1 5 5 H 1.48504 * 109.46991 * 33.11385 * 3 2 1 6 6 H 1.48499 * 109.47148 * 153.11383 * 3 2 1 7 7 C 1.37883 * 119.99487 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00851 * 354.15212 * 7 2 1 9 9 C 1.50703 * 119.99414 * 174.42446 * 7 2 1 10 10 C 1.53000 * 115.55331 * 294.56871 * 9 7 2 11 11 N 1.46492 * 109.47112 * 294.93683 * 10 9 7 12 12 C 1.34781 * 120.00065 * 183.82356 * 11 10 9 13 13 O 1.21280 * 119.99601 * 5.07859 * 12 11 10 14 14 C 1.50693 * 120.00227 * 185.07332 * 12 11 10 15 15 C 1.53004 * 109.47428 * 185.63807 * 14 12 11 16 16 C 1.50702 * 109.47283 * 180.02562 * 15 14 12 17 17 C 1.38387 * 120.00113 * 124.99961 * 16 15 14 18 18 N 1.32120 * 120.00198 * 179.97438 * 17 16 15 19 19 C 1.32157 * 119.99571 * 0.02562 * 18 17 16 20 20 C 1.38341 * 120.00196 * 359.97438 * 19 18 17 21 21 N 1.32124 * 120.00106 * 304.72451 * 16 15 14 22 22 C 1.53005 * 117.49626 * 148.90251 * 9 7 2 23 23 C 1.53001 * 117.49600 * 80.24130 * 9 7 2 24 24 H 0.96998 * 120.00070 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46610 * 54.94045 * 10 9 7 26 26 H 1.09001 * 109.46719 * 174.93463 * 10 9 7 27 27 H 0.97007 * 120.00284 * 3.82973 * 11 10 9 28 28 H 1.09007 * 109.47396 * 305.63843 * 14 12 11 29 29 H 1.08998 * 109.47285 * 65.63919 * 14 12 11 30 30 H 1.08998 * 109.46776 * 300.00522 * 15 14 12 31 31 H 1.08998 * 109.46796 * 59.99813 * 15 14 12 32 32 H 1.08008 * 119.99827 * 359.95970 * 17 16 15 33 33 H 1.07996 * 119.99585 * 180.02562 * 19 18 17 34 34 H 1.08001 * 119.99578 * 180.02562 * 20 19 18 35 35 H 1.09002 * 117.49847 * 359.97438 * 22 9 7 36 36 H 1.08997 * 117.49813 * 145.02101 * 22 9 7 37 37 H 1.09003 * 117.49800 * 214.97304 * 23 9 7 38 38 H 1.08995 * 117.50224 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4307 2.0844 -1.3980 5 1 1.4811 2.6327 0.7649 6 1 3.5781 1.4219 0.6331 7 6 2.0044 -1.1942 -0.0005 8 1 1.4687 -2.1271 0.0943 9 6 3.5061 -1.1972 -0.1273 10 6 4.0569 -0.6857 -1.4600 11 7 3.6483 -1.5908 -2.5369 12 6 4.0846 -1.3817 -3.7949 13 8 4.8875 -0.5009 -4.0196 14 6 3.5748 -2.2422 -4.9220 15 6 4.3255 -1.8943 -6.2091 16 6 3.8152 -2.7544 -7.3364 17 6 3.3439 -2.1661 -8.4970 18 7 2.8970 -2.9202 -9.4855 19 6 2.8997 -4.2364 -9.3658 20 6 3.3710 -4.8244 -8.2056 21 7 3.8230 -4.0704 -7.2190 22 6 4.2714 -2.3257 0.5668 23 6 4.3220 -0.9044 1.1334 24 1 -0.4850 0.8400 -0.0004 25 1 3.6651 0.3125 -1.6558 26 1 5.1451 -0.6459 -1.4120 27 1 3.0636 -2.3406 -2.3447 28 1 3.7371 -3.2925 -4.6794 29 1 2.5091 -2.0624 -5.0632 30 1 4.1633 -0.8441 -6.4517 31 1 5.3912 -2.0741 -6.0680 32 1 3.3411 -1.0905 -8.5945 33 1 2.5349 -4.8528 -10.1740 34 1 3.3735 -5.9000 -8.1080 35 1 3.6887 -3.0656 1.1156 36 1 5.1674 -2.7033 0.0743 37 1 5.2515 -0.3478 1.0134 38 1 3.7728 -0.7093 2.0544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577014937.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:44 Heat of formation + Delta-G solvation = 2.417216 kcal Electronic energy + Delta-G solvation = -20305.294615 eV Core-core repulsion = 17147.385322 eV Total energy + Delta-G solvation = -3157.909294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.04171 -40.70875 -38.72505 -35.90530 -34.95061 -34.45239 -34.27095 -31.52085 -28.74653 -27.45873 -26.07888 -25.34745 -23.31878 -22.98264 -21.31386 -20.81374 -18.74332 -18.47680 -18.05405 -17.71461 -17.07195 -16.72334 -16.50887 -16.42589 -15.80285 -15.34009 -14.98412 -14.76115 -14.55427 -14.21237 -14.04415 -13.70412 -13.34697 -13.04653 -13.00067 -12.67051 -12.56409 -12.31181 -12.18467 -12.07875 -12.00115 -11.48247 -11.05278 -10.91178 -10.69744 -10.34490 -10.14816 -10.00270 -9.88118 -8.31605 -6.35565 -0.17017 0.16833 1.31730 1.38281 1.48566 1.69488 2.29479 2.34878 2.75302 2.99332 3.11633 3.34973 3.38873 3.54527 3.76003 3.95530 4.02582 4.13354 4.19443 4.31843 4.42396 4.47042 4.48758 4.54241 4.61327 4.66639 4.84687 4.91998 4.97026 5.06633 5.08582 5.27558 5.46366 5.50824 5.60030 5.69095 6.29426 6.33048 6.67253 6.75684 6.83741 7.31433 7.33778 8.82769 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.003728 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.538144 B = 7509.254695 C = 7745.165684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.034 3.966 3 Si 0.915 3.085 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.223 1.223 7 C -0.476 4.476 8 H 0.045 0.955 9 C -0.043 4.043 10 C 0.160 3.840 11 N -0.704 5.704 12 C 0.506 3.494 13 O -0.591 6.591 14 C -0.120 4.120 15 C -0.043 4.043 16 C 0.076 3.924 17 C 0.044 3.956 18 N -0.462 5.462 19 C 0.041 3.959 20 C 0.054 3.946 21 N -0.459 5.459 22 C -0.155 4.155 23 C -0.183 4.183 24 H 0.264 0.736 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.412 0.588 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.183 0.817 33 H 0.202 0.798 34 H 0.203 0.797 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.229 -8.907 -15.059 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.165 4.165 3 Si 0.742 3.258 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.146 1.146 7 C -0.514 4.514 8 H 0.063 0.937 9 C -0.044 4.044 10 C 0.035 3.965 11 N -0.354 5.354 12 C 0.294 3.706 13 O -0.473 6.473 14 C -0.160 4.160 15 C -0.082 4.082 16 C -0.063 4.063 17 C -0.115 4.115 18 N -0.176 5.176 19 C -0.118 4.118 20 C -0.106 4.106 21 N -0.175 5.175 22 C -0.192 4.192 23 C -0.221 4.221 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.248 0.752 28 H 0.131 0.869 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.200 0.800 33 H 0.219 0.781 34 H 0.220 0.780 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.629 -8.154 -15.190 19.279 hybrid contribution -0.571 0.711 0.335 0.972 sum 8.058 -7.443 -14.855 18.466 Atomic orbital electron populations 1.70009 1.07994 1.27848 1.52133 1.25571 0.94934 1.02097 0.93885 0.86245 0.81568 0.80057 0.77965 1.21365 1.22312 1.14554 1.20380 0.88904 0.92931 1.49185 0.93686 1.19462 0.92582 1.02683 0.89663 1.20862 0.97273 0.91803 0.86526 1.45901 1.50573 1.31521 1.07379 1.21192 0.80613 0.84442 0.84352 1.90631 1.36035 1.36117 1.84524 1.21492 1.01792 1.01056 0.91621 1.20151 1.00322 0.98320 0.89424 1.22228 0.96319 0.91550 0.96242 1.23892 0.95384 1.02552 0.89676 1.68500 1.12058 1.07470 1.29582 1.24365 0.96444 0.91547 0.99488 1.24385 0.93685 1.03019 0.89539 1.68260 1.12726 1.05753 1.30712 1.22845 1.01470 0.91121 1.03735 1.23083 1.01353 0.99407 0.98228 0.92660 0.95113 0.92104 0.75225 0.86899 0.88187 0.88786 0.89507 0.79989 0.78088 0.78050 0.89641 0.88201 0.88932 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.38 13.96 21.45 0.30 -56.08 16 2 C 0.03 1.87 5.47 84.66 0.46 2.34 16 3 Si 0.92 43.56 24.97 68.60 1.71 45.28 16 4 H -0.29 -13.98 7.01 99.48 0.70 -13.28 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.22 -9.58 5.73 99.48 0.57 -9.01 16 7 C -0.48 -24.84 9.16 25.60 0.23 -24.60 16 8 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 9 C -0.04 -1.80 0.84 -52.92 -0.04 -1.84 16 10 C 0.16 6.51 5.15 86.38 0.44 6.96 16 11 N -0.70 -25.59 5.48 -463.07 -2.54 -28.13 16 12 C 0.51 17.26 7.82 87.65 0.69 17.94 16 13 O -0.59 -23.81 15.98 -3.03 -0.05 -23.86 16 14 C -0.12 -3.02 5.57 29.85 0.17 -2.85 16 15 C -0.04 -0.99 4.94 29.85 0.15 -0.84 16 16 C 0.08 1.62 6.17 42.55 0.26 1.88 16 17 C 0.04 0.87 10.85 84.69 0.92 1.79 16 18 N -0.46 -9.28 10.50 -195.23 -2.05 -11.33 16 19 C 0.04 0.60 11.22 84.67 0.95 1.55 16 20 C 0.05 0.80 11.22 84.67 0.95 1.75 16 21 N -0.46 -9.65 10.06 -183.30 -1.84 -11.49 16 22 C -0.15 -5.43 9.96 30.62 0.30 -5.13 16 23 C -0.18 -6.88 8.03 30.62 0.25 -6.63 16 24 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 25 H 0.03 1.41 5.05 -2.39 -0.01 1.40 16 26 H 0.06 2.34 8.07 -2.39 -0.02 2.32 16 27 H 0.41 14.08 8.34 -92.70 -0.77 13.30 16 28 H 0.11 2.57 7.97 -2.38 -0.02 2.55 16 29 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.09 2.10 7.78 -2.39 -0.02 2.08 16 31 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.18 2.90 7.95 -2.91 -0.02 2.87 16 33 H 0.20 1.33 8.06 -2.91 -0.02 1.30 16 34 H 0.20 1.45 8.06 -2.91 -0.02 1.42 16 35 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -69.60 323.70 1.42 -68.18 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.15 Total: 25.11 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.73 Total: -7.68 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -6.13 Total: -107.03 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.71 Total: 45.28 kcal Total: -69.60 1.42 -68.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577014937.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.601 kcal (2) G-P(sol) polarization free energy of solvation -69.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds