Wall clock time and date at job start Mon Mar 30 2020 01:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99835 * 2 1 4 4 H 1.08998 * 109.47295 * 30.00573 * 3 2 1 5 5 C 1.50693 * 109.47057 * 269.99672 * 3 2 1 6 6 O 1.21281 * 120.00369 * 355.00677 * 5 3 2 7 7 N 1.34786 * 120.00039 * 174.99990 * 5 3 2 8 8 C 1.39121 * 119.99920 * 184.36804 * 7 5 3 9 9 C 1.38646 * 120.28683 * 325.34619 * 8 7 5 10 10 C 1.38223 * 120.03279 * 180.25797 * 9 8 7 11 11 C 1.38864 * 120.61570 * 359.74360 * 10 9 8 12 12 C 1.36462 * 120.58020 * 359.97438 * 11 10 9 13 13 C 1.40734 * 119.94128 * 0.02562 * 12 11 10 14 14 C 1.41072 * 120.30236 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00276 * 154.83424 * 14 13 12 16 16 C 1.39953 * 119.99913 * 334.82989 * 14 13 12 17 17 N 1.30853 * 120.00167 * 334.81831 * 16 14 13 18 18 Si 1.86800 * 119.99850 * 154.81980 * 16 14 13 19 19 H 1.48504 * 109.47205 * 180.02562 * 18 16 14 20 20 H 1.48501 * 109.47176 * 299.99672 * 18 16 14 21 21 H 1.48493 * 109.47516 * 60.00240 * 18 16 14 22 22 C 1.53003 * 109.46752 * 150.00359 * 3 2 1 23 23 C 1.52995 * 117.50001 * 8.74297 * 22 3 2 24 24 C 1.53005 * 117.49829 * 300.08117 * 22 3 2 25 25 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47128 * 299.99556 * 1 2 3 27 27 H 1.08999 * 109.47168 * 59.99866 * 1 2 3 28 28 H 0.96996 * 119.99391 * 4.36899 * 7 5 3 29 29 H 1.07994 * 119.98174 * 359.97438 * 9 8 7 30 30 H 1.08004 * 119.69500 * 179.76295 * 10 9 8 31 31 H 1.08006 * 119.71155 * 180.02562 * 11 10 9 32 32 H 1.07998 * 120.03434 * 180.02562 * 12 11 10 33 33 H 0.96999 * 119.99965 * 354.63734 * 17 16 14 34 34 H 1.08995 * 115.55050 * 154.41822 * 22 3 2 35 35 H 1.09001 * 117.50286 * 0.02562 * 23 22 3 36 36 H 1.09003 * 117.49940 * 145.02299 * 23 22 3 37 37 H 1.09001 * 117.50111 * 214.97890 * 24 22 3 38 38 H 1.08999 * 117.49891 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2145 1.7643 -1.4208 6 8 1.9791 1.0106 -2.3413 7 7 2.6588 3.0125 -1.6686 8 6 2.7610 3.4670 -2.9795 9 6 3.1180 2.5945 -3.9962 10 6 3.2232 3.0529 -5.2959 11 6 2.9690 4.3840 -5.5992 12 6 2.6103 5.2631 -4.6190 13 6 2.4961 4.8221 -3.2874 14 6 2.1263 5.7244 -2.2680 15 1 1.6517 5.3590 -1.3693 16 6 2.3745 7.0932 -2.4212 17 7 3.3385 7.4994 -3.2074 18 14 1.3298 8.3404 -1.5032 19 1 1.7914 9.7124 -1.8346 20 1 -0.0916 8.1865 -1.9046 21 1 1.4588 8.1139 -0.0414 22 6 3.3589 1.2632 0.7212 23 6 3.9152 -0.1111 1.0990 24 6 3.3638 0.8167 2.1846 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 2.9073 3.5937 -0.9329 29 1 3.3184 1.5574 -3.7718 30 1 3.5053 2.3694 -6.0831 31 1 3.0552 4.7264 -6.6199 32 1 2.4143 6.2963 -4.8647 33 1 3.9303 6.8529 -3.6229 34 1 4.0735 2.0319 0.4273 35 1 3.3206 -0.9852 0.8335 36 1 4.9959 -0.2463 1.0540 37 1 4.0819 1.2913 2.8533 38 1 2.4061 0.5535 2.6337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578764758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:11 Heat of formation + Delta-G solvation = -40.090502 kcal Electronic energy + Delta-G solvation = -21273.215268 eV Core-core repulsion = 18081.169950 eV Total energy + Delta-G solvation = -3192.045318 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.05678 -38.34001 -36.98055 -36.07641 -33.95824 -33.76211 -29.69238 -29.31895 -27.82914 -26.06676 -25.00933 -22.39641 -21.99421 -21.17521 -20.72749 -19.36873 -18.09033 -17.31020 -16.64169 -16.24746 -15.56169 -15.00835 -14.67084 -14.51403 -14.31848 -14.03528 -13.56780 -13.13011 -13.04816 -12.66060 -12.24473 -12.00145 -11.64091 -11.57430 -11.37021 -11.34409 -11.04379 -10.74871 -10.57438 -10.47005 -10.40885 -10.19002 -10.05224 -9.70325 -9.27688 -9.00046 -8.65750 -7.63517 -7.40891 -6.97837 -4.50199 2.52525 2.77869 3.09284 3.20060 3.27160 3.29870 3.43733 3.87183 3.94003 4.00414 4.52204 4.65985 4.87642 4.90091 5.19620 5.29032 5.32916 5.43386 5.48142 5.54899 5.62502 5.72546 5.86333 6.06684 6.19541 6.24704 6.32535 6.47450 6.80617 6.94022 7.04352 7.13437 7.36879 7.51972 7.70529 7.75566 7.90765 8.00601 8.20770 8.33793 8.65707 8.75839 8.95692 9.97605 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016148 B = 0.005877 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.596876 B = 4763.479209 C = 5703.890501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.106 3.894 4 H 0.088 0.912 5 C 0.479 3.521 6 O -0.526 6.526 7 N -0.634 5.634 8 C 0.006 3.994 9 C -0.073 4.073 10 C -0.240 4.240 11 C -0.092 4.092 12 C -0.208 4.208 13 C 0.090 3.910 14 C -0.526 4.526 15 H 0.073 0.927 16 C 0.041 3.959 17 N -0.794 5.794 18 Si 1.063 2.937 19 H -0.273 1.273 20 H -0.275 1.275 21 H -0.276 1.276 22 C -0.160 4.160 23 C -0.159 4.159 24 C -0.170 4.170 25 H 0.087 0.913 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.402 0.598 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.300 0.700 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 -6.779 9.845 12.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.045 3.955 4 H 0.105 0.895 5 C 0.265 3.735 6 O -0.402 6.402 7 N -0.278 5.278 8 C -0.087 4.087 9 C -0.093 4.093 10 C -0.260 4.260 11 C -0.111 4.111 12 C -0.228 4.228 13 C 0.086 3.914 14 C -0.554 4.554 15 H 0.092 0.908 16 C -0.181 4.181 17 N -0.417 5.417 18 Si 0.887 3.113 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.202 1.202 22 C -0.179 4.179 23 C -0.195 4.195 24 C -0.207 4.207 25 H 0.106 0.894 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.237 0.763 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.138 0.862 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.870 -5.864 9.398 11.234 hybrid contribution 0.113 -1.074 -0.024 1.081 sum -1.757 -6.939 9.374 11.794 Atomic orbital electron populations 1.22838 0.80807 1.02885 1.00162 1.87922 1.19847 1.25143 1.94482 1.21404 0.95020 0.86453 0.92666 0.89478 1.21104 0.78296 0.82616 0.91466 1.90649 1.50515 1.53530 1.45517 1.42869 1.62883 1.13991 1.08092 1.17603 1.13323 0.94823 0.82973 1.20714 0.97834 0.98278 0.92458 1.20271 1.14676 0.95487 0.95590 1.20399 0.99546 0.93693 0.97419 1.20747 1.10321 0.99448 0.92293 1.17494 0.90344 0.90631 0.92901 1.20311 1.37133 0.93602 1.04386 0.90844 1.26958 0.96277 0.98999 0.95908 1.70465 1.09784 1.41481 1.20000 0.83657 0.76104 0.75538 0.76024 1.19809 1.20053 1.20154 1.22302 0.96835 1.01005 0.97724 1.22872 1.00601 0.94149 1.01919 1.22960 1.03089 1.03971 0.90692 0.89442 0.94154 0.93435 0.76318 0.87148 0.89009 0.89180 0.87360 0.88572 0.86213 0.87468 0.88925 0.88573 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.81 101.05 1.09 1.46 16 2 O -0.36 -5.46 8.24 -55.09 -0.45 -5.92 16 3 C 0.11 1.60 2.87 -27.88 -0.08 1.52 16 4 H 0.09 1.15 7.79 -51.93 -0.40 0.75 16 5 C 0.48 9.44 6.96 -10.98 -0.08 9.37 16 6 O -0.53 -12.29 13.92 -14.30 -0.20 -12.49 16 7 N -0.63 -13.03 4.79 -9.48 -0.05 -13.07 16 8 C 0.01 0.15 6.34 -83.17 -0.53 -0.37 16 9 C -0.07 -1.78 8.69 -39.44 -0.34 -2.12 16 10 C -0.24 -5.64 10.04 -39.36 -0.39 -6.03 16 11 C -0.09 -2.16 9.96 -39.99 -0.40 -2.56 16 12 C -0.21 -5.27 7.88 -39.28 -0.31 -5.58 16 13 C 0.09 2.32 5.32 -106.65 -0.57 1.75 16 14 C -0.53 -13.03 8.35 -37.87 -0.32 -13.35 16 15 H 0.07 1.73 7.39 -52.49 -0.39 1.34 16 16 C 0.04 0.99 4.95 -17.33 -0.09 0.90 16 17 N -0.79 -20.18 12.32 55.55 0.68 -19.50 16 18 Si 1.06 20.53 30.00 -169.99 -5.10 15.43 16 19 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 20 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.28 -4.98 7.11 56.52 0.40 -4.57 16 22 C -0.16 -2.08 5.66 -90.62 -0.51 -2.60 16 23 C -0.16 -1.90 9.88 -26.69 -0.26 -2.16 16 24 C -0.17 -1.78 10.19 -26.69 -0.27 -2.05 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.40 7.37 7.86 -40.82 -0.32 7.05 16 29 H 0.11 2.71 6.20 -52.49 -0.33 2.38 16 30 H 0.09 1.94 8.06 -52.48 -0.42 1.51 16 31 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 32 H 0.11 2.79 6.45 -52.49 -0.34 2.46 16 33 H 0.30 7.87 6.62 -40.82 -0.27 7.60 16 34 H 0.12 1.54 7.95 -51.93 -0.41 1.13 16 35 H 0.11 1.39 7.06 -51.93 -0.37 1.02 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -29.51 320.70 -8.34 -37.85 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -5.00 Total: 14.67 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -3.05 Total: -21.81 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.64 Total: -32.57 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.65 Total: -18.40 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.10 Total: 15.43 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.51 -8.34 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578764758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.239 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds